Wall clock time and date at job start Tue Mar 31 2020 14:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34694 * 116.99875 * 2 1 4 4 O 1.21440 * 120.00201 * 359.97438 * 3 2 1 5 5 C 1.47970 * 120.00205 * 179.97438 * 3 2 1 6 6 N 1.33506 * 120.57540 * 359.97438 * 5 3 2 7 7 C 1.31343 * 120.94153 * 180.02562 * 6 5 3 8 8 C 1.50694 * 118.91572 * 179.97438 * 7 6 5 9 9 N 1.32045 * 122.16347 * 0.02562 * 7 6 5 10 10 C 1.32394 * 121.04702 * 359.72470 * 9 7 6 11 11 O 1.35568 * 120.53226 * 180.26739 * 10 9 7 12 12 C 1.39708 * 120.57885 * 179.97438 * 5 3 2 13 13 O 1.35702 * 120.97182 * 359.96342 * 12 5 3 14 14 C 1.42895 * 117.00450 * 89.99345 * 13 12 5 15 15 C 1.53514 * 114.17121 * 210.00274 * 14 13 12 16 16 N 1.47483 * 87.92777 * 220.32774 * 15 14 13 17 17 C 1.46903 * 110.99717 * 138.70421 * 16 15 14 18 18 C 1.50694 * 109.47066 * 169.99804 * 17 16 15 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.47480 * 87.83900 * 27.00973 * 16 15 14 27 27 H 1.09002 * 109.46811 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47251 * 300.00176 * 1 2 3 29 29 H 1.09003 * 109.47240 * 60.00619 * 1 2 3 30 30 H 1.09001 * 109.47021 * 90.00380 * 8 7 6 31 31 H 1.09004 * 109.46844 * 210.00178 * 8 7 6 32 32 H 1.09000 * 109.47417 * 330.00414 * 8 7 6 33 33 H 0.96697 * 113.99963 * 270.26483 * 11 10 9 34 34 H 1.09011 * 113.25486 * 342.95357 * 14 13 12 35 35 H 1.09000 * 113.47331 * 105.56452 * 15 14 13 36 36 H 1.08995 * 113.52785 * 335.10042 * 15 14 13 37 37 H 1.09007 * 109.47052 * 49.99488 * 17 16 15 38 38 H 1.09003 * 109.46808 * 290.00181 * 17 16 15 39 39 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 40 40 H 1.09004 * 113.47132 * 87.75237 * 26 16 15 41 41 H 1.09000 * 113.47538 * 218.21976 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2001 0.0000 4 8 1.4020 2.2186 -0.0005 5 6 3.5411 1.2777 0.0006 6 7 4.2795 0.1654 0.0016 7 6 5.5915 0.2258 0.0026 8 6 6.3801 -1.0583 0.0044 9 7 6.2423 1.3748 0.0032 10 6 5.5918 2.5279 -0.0027 11 8 6.2705 3.7015 -0.0075 12 6 4.1878 2.5160 0.0000 13 8 3.4798 3.6737 -0.0018 14 6 3.1398 4.2283 1.2705 15 6 1.8296 5.0282 1.2777 16 7 2.4957 6.0090 2.1550 17 6 2.1481 7.3828 1.7678 18 6 2.6398 8.3413 2.8216 19 1 3.1583 7.9674 3.6921 20 6 2.4269 9.6957 2.6750 21 7 1.7951 10.1510 1.6152 22 14 3.0358 10.8837 3.9816 23 1 1.9771 11.0800 5.0042 24 1 4.2516 10.3278 4.6281 25 1 3.3628 12.1878 3.3510 26 6 3.7760 5.5972 1.5497 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 6.5711 -1.3688 -1.0229 31 1 7.3282 -0.9017 0.5189 32 1 5.8114 -1.8333 0.5183 33 1 6.4702 4.0440 0.8744 34 1 3.2317 3.5148 2.0895 35 1 1.0040 4.5048 1.7599 36 1 1.5605 5.4312 0.3015 37 1 1.0657 7.4708 1.6732 38 1 2.6168 7.6208 0.8129 39 1 1.6450 11.1038 1.5123 40 1 4.0270 6.1519 0.6455 41 1 4.5998 5.5561 2.2623 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234565628.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:45 Heat of formation + Delta-G solvation = -52.426592 kcal Electronic energy + Delta-G solvation = -27571.616511 eV Core-core repulsion = 23455.282435 eV Total energy + Delta-G solvation = -4116.334076 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.94706 -40.33538 -39.78990 -38.07710 -37.39637 -36.49463 -33.89168 -32.93376 -32.32828 -29.47810 -28.52403 -27.97876 -25.78590 -25.55812 -25.08149 -23.41394 -21.91262 -21.47033 -19.64992 -19.35026 -19.15399 -18.21241 -17.43165 -17.02386 -16.78083 -16.38890 -16.09322 -15.42777 -14.95910 -14.66769 -14.40969 -14.36400 -14.17913 -13.85016 -13.58192 -12.94040 -12.90978 -12.75310 -12.57443 -12.39640 -12.33758 -12.10374 -11.97509 -11.65141 -11.29262 -11.06385 -11.05031 -11.00389 -10.97571 -10.59629 -10.32848 -10.05863 -9.88650 -9.43655 -9.27587 -9.22862 -8.46568 -8.01356 -6.06031 -4.07917 -0.14122 0.28053 2.04867 2.12016 2.81841 3.08087 3.30460 3.33048 3.36261 3.38368 3.40104 3.92037 4.30365 4.40378 4.55373 4.67238 4.82803 4.86917 4.88540 4.97825 5.05600 5.18464 5.24874 5.28284 5.29339 5.34587 5.68457 5.79208 5.96714 5.99476 6.10693 6.15720 6.24518 6.30455 6.48074 6.94052 7.14152 7.28957 7.34016 7.55863 7.59807 7.79350 8.04403 8.39034 8.98928 9.56152 11.05013 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016507 B = 0.003193 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.867301 B = 8767.311567 C =10111.017811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.336 6.336 3 C 0.516 3.484 4 O -0.454 6.454 5 C 0.132 3.868 6 N -0.466 5.466 7 C 0.326 3.674 8 C -0.083 4.083 9 N -0.505 5.505 10 C 0.358 3.642 11 O -0.455 6.455 12 C 0.050 3.950 13 O -0.288 6.288 14 C 0.058 3.942 15 C 0.014 3.986 16 N -0.463 5.463 17 C 0.162 3.838 18 C -0.507 4.507 19 H 0.063 0.937 20 C 0.054 3.946 21 N -0.898 5.898 22 Si 0.900 3.100 23 H -0.280 1.280 24 H -0.273 1.273 25 H -0.287 1.287 26 C -0.003 4.003 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.413 0.587 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.031 0.969 38 H 0.007 0.993 39 H 0.262 0.738 40 H 0.079 0.921 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.232 -24.358 -3.565 25.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.252 6.252 3 C 0.355 3.645 4 O -0.337 6.337 5 C -0.012 4.012 6 N -0.186 5.186 7 C 0.059 3.941 8 C -0.141 4.141 9 N -0.232 5.232 10 C 0.165 3.835 11 O -0.263 6.263 12 C -0.002 4.002 13 O -0.200 6.200 14 C 0.003 3.997 15 C -0.115 4.115 16 N -0.188 5.188 17 C 0.036 3.964 18 C -0.545 4.545 19 H 0.082 0.918 20 C -0.147 4.147 21 N -0.538 5.538 22 Si 0.728 3.272 23 H -0.206 1.206 24 H -0.198 1.198 25 H -0.213 1.213 26 C -0.132 4.132 27 H 0.123 0.877 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.274 0.726 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.025 0.975 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.131 -24.501 -3.657 25.298 hybrid contribution -0.209 1.884 0.253 1.912 sum 4.922 -22.618 -3.404 23.396 Atomic orbital electron populations 1.23387 0.75504 1.04026 1.03031 1.86641 1.23571 1.31268 1.83677 1.20346 0.86973 0.82414 0.74734 1.90994 1.64926 1.35557 1.42243 1.20953 0.92407 0.88665 0.99212 1.68298 1.07686 1.30092 1.12488 1.23087 0.86425 0.93290 0.91280 1.20630 0.99147 0.89897 1.04455 1.67776 1.43012 0.98132 1.14319 1.19923 0.86087 0.86193 0.91272 1.84792 1.75720 1.31339 1.34423 1.20604 0.90810 0.88041 1.00740 1.86225 1.70380 1.33191 1.30245 1.24539 0.99095 0.93708 0.82375 1.23958 0.95622 0.93948 0.98004 1.69048 1.01877 1.06642 1.41211 1.20284 0.97174 0.83125 0.95845 1.21069 1.36655 0.90527 1.06283 0.91846 1.25015 0.95395 0.98407 0.95888 1.69959 1.41824 1.14171 1.27813 0.86459 0.79146 0.80115 0.81454 1.20609 1.19830 1.21258 1.24341 0.96600 0.93091 0.99184 0.87706 0.91431 0.91526 0.89082 0.89094 0.88950 0.72637 0.89029 0.89890 0.90757 0.95067 0.97493 0.92832 0.90255 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.34 -3.92 10.42 -40.48 -0.42 -4.34 16 3 C 0.52 7.09 7.96 34.72 0.28 7.36 16 4 O -0.45 -7.14 14.04 -26.38 -0.37 -7.51 16 5 C 0.13 1.79 6.80 -82.60 -0.56 1.23 16 6 N -0.47 -5.66 10.13 -7.35 -0.07 -5.74 16 7 C 0.33 3.49 7.64 -157.37 -1.20 2.29 16 8 C -0.08 -0.52 10.31 36.00 0.37 -0.15 16 9 N -0.50 -6.03 10.33 -10.64 -0.11 -6.14 16 10 C 0.36 4.60 7.86 -16.49 -0.13 4.47 16 11 O -0.46 -5.39 13.43 -30.64 -0.41 -5.80 16 12 C 0.05 0.71 5.71 -38.22 -0.22 0.49 16 13 O -0.29 -4.66 8.48 -46.45 -0.39 -5.06 16 14 C 0.06 0.94 3.97 -26.20 -0.10 0.84 16 15 C 0.01 0.26 7.12 -7.53 -0.05 0.20 16 16 N -0.46 -10.08 6.32 -246.08 -1.55 -11.63 16 17 C 0.16 4.25 4.57 -4.98 -0.02 4.23 16 18 C -0.51 -14.40 9.39 -34.44 -0.32 -14.72 16 19 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 20 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 21 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 22 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.00 -0.05 7.55 -7.54 -0.06 -0.11 16 27 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.41 3.06 9.06 45.56 0.41 3.48 16 34 H 0.09 1.36 7.96 -51.92 -0.41 0.95 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 36 H 0.07 1.49 7.91 -51.93 -0.41 1.07 16 37 H 0.03 0.88 8.08 -51.92 -0.42 0.46 16 38 H 0.01 0.20 7.30 -51.93 -0.38 -0.18 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.08 1.54 7.42 -51.93 -0.39 1.15 16 41 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 361.15 15.07 5.44 5.44 Total: -1.00 -34.49 361.15 -7.75 -42.24 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -4.52 Total: -0.97 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -1.05 Total: 8.93 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: -1.00 Total: -49.64 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -1.60 Total: -22.70 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.49 -7.75 -42.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234565628.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.183 kcal (2) G-P(sol) polarization free energy of solvation -34.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds