Wall clock time and date at job start Tue Mar 31 2020 14:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34694 * 116.99875 * 2 1 4 4 O 1.21440 * 120.00201 * 359.97438 * 3 2 1 5 5 C 1.47970 * 120.00205 * 179.97438 * 3 2 1 6 6 N 1.33506 * 120.57540 * 359.97438 * 5 3 2 7 7 C 1.31343 * 120.94153 * 180.02562 * 6 5 3 8 8 C 1.50694 * 118.91572 * 179.97438 * 7 6 5 9 9 N 1.32045 * 122.16347 * 0.02562 * 7 6 5 10 10 C 1.32394 * 121.04702 * 359.72470 * 9 7 6 11 11 O 1.35568 * 120.53226 * 180.26739 * 10 9 7 12 12 C 1.39708 * 120.57885 * 179.97438 * 5 3 2 13 13 O 1.35702 * 120.97182 * 359.96342 * 12 5 3 14 14 C 1.42895 * 117.00450 * 89.99345 * 13 12 5 15 15 C 1.53514 * 114.17121 * 210.00274 * 14 13 12 16 16 N 1.47483 * 87.92777 * 220.32774 * 15 14 13 17 17 C 1.46903 * 110.99717 * 138.70421 * 16 15 14 18 18 C 1.50694 * 109.47066 * 169.99804 * 17 16 15 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.47480 * 87.83900 * 27.00973 * 16 15 14 27 27 H 1.09002 * 109.46811 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47251 * 300.00176 * 1 2 3 29 29 H 1.09003 * 109.47240 * 60.00619 * 1 2 3 30 30 H 1.09001 * 109.47021 * 90.00380 * 8 7 6 31 31 H 1.09004 * 109.46844 * 210.00178 * 8 7 6 32 32 H 1.09000 * 109.47417 * 330.00414 * 8 7 6 33 33 H 0.96697 * 113.99963 * 270.26483 * 11 10 9 34 34 H 1.09011 * 113.25486 * 342.95357 * 14 13 12 35 35 H 1.09000 * 113.47331 * 105.56452 * 15 14 13 36 36 H 1.08995 * 113.52785 * 335.10042 * 15 14 13 37 37 H 1.09007 * 109.47052 * 49.99488 * 17 16 15 38 38 H 1.09003 * 109.46808 * 290.00181 * 17 16 15 39 39 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 40 40 H 1.09004 * 113.47132 * 87.75237 * 26 16 15 41 41 H 1.09000 * 113.47538 * 218.21976 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2001 0.0000 4 8 1.4020 2.2186 -0.0005 5 6 3.5411 1.2777 0.0006 6 7 4.2795 0.1654 0.0016 7 6 5.5915 0.2258 0.0026 8 6 6.3801 -1.0583 0.0044 9 7 6.2423 1.3748 0.0032 10 6 5.5918 2.5279 -0.0027 11 8 6.2705 3.7015 -0.0075 12 6 4.1878 2.5160 0.0000 13 8 3.4798 3.6737 -0.0018 14 6 3.1398 4.2283 1.2705 15 6 1.8296 5.0282 1.2777 16 7 2.4957 6.0090 2.1550 17 6 2.1481 7.3828 1.7678 18 6 2.6398 8.3413 2.8216 19 1 3.1583 7.9674 3.6921 20 6 2.4269 9.6957 2.6750 21 7 1.7951 10.1510 1.6152 22 14 3.0358 10.8837 3.9816 23 1 1.9771 11.0800 5.0042 24 1 4.2516 10.3278 4.6281 25 1 3.3628 12.1878 3.3510 26 6 3.7760 5.5972 1.5497 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 6.5711 -1.3688 -1.0229 31 1 7.3282 -0.9017 0.5189 32 1 5.8114 -1.8333 0.5183 33 1 6.4702 4.0440 0.8744 34 1 3.2317 3.5148 2.0895 35 1 1.0040 4.5048 1.7599 36 1 1.5605 5.4312 0.3015 37 1 1.0657 7.4708 1.6732 38 1 2.6168 7.6208 0.8129 39 1 1.6450 11.1038 1.5123 40 1 4.0270 6.1519 0.6455 41 1 4.5998 5.5561 2.2623 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234565628.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:45 Heat of formation + Delta-G solvation = -81.161112 kcal Electronic energy + Delta-G solvation = -27572.862533 eV Core-core repulsion = 23455.282435 eV Total energy + Delta-G solvation = -4117.580098 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.92980 -41.31403 -41.22649 -39.12100 -38.55253 -37.53647 -35.09011 -34.79297 -33.22660 -31.26133 -29.31065 -28.92928 -27.25775 -26.94835 -26.51210 -24.43202 -23.60191 -22.50704 -21.18476 -20.30545 -20.08741 -19.44862 -18.56781 -18.36137 -17.99306 -17.76377 -17.23224 -16.81451 -16.36197 -16.00336 -15.83828 -15.73479 -15.16162 -14.66858 -14.50831 -14.41636 -14.23603 -14.02060 -13.75950 -13.53659 -13.33131 -13.26188 -13.12394 -13.02868 -12.82938 -12.52352 -12.29966 -12.22841 -12.08530 -11.96686 -11.87441 -11.78494 -11.36231 -11.23927 -10.64348 -10.47543 -10.33268 -9.81751 -8.24674 -6.35941 -1.14670 -0.65864 1.07591 1.18621 1.40118 1.42089 1.53440 1.84589 2.07458 2.32263 2.38918 2.55381 2.97218 3.07547 3.17256 3.28223 3.43454 3.66952 3.73992 3.97845 4.16822 4.26841 4.32494 4.41775 4.55603 4.59198 4.63879 4.70730 4.76361 4.76769 4.79889 4.81047 5.00952 5.05826 5.23040 5.29707 5.50804 5.69953 5.97954 6.00882 6.28588 6.32597 6.38839 6.63411 6.77946 7.33796 8.86950 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016507 B = 0.003193 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.867301 B = 8767.311567 C =10111.017811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.337 6.337 3 C 0.516 3.484 4 O -0.483 6.483 5 C 0.131 3.869 6 N -0.470 5.470 7 C 0.331 3.669 8 C -0.082 4.082 9 N -0.509 5.509 10 C 0.366 3.634 11 O -0.465 6.465 12 C 0.023 3.977 13 O -0.300 6.300 14 C 0.087 3.913 15 C 0.010 3.990 16 N -0.475 5.475 17 C 0.177 3.823 18 C -0.526 4.526 19 H 0.064 0.936 20 C 0.000 4.000 21 N -0.935 5.935 22 Si 0.975 3.025 23 H -0.273 1.273 24 H -0.261 1.261 25 H -0.281 1.281 26 C -0.002 4.002 27 H 0.140 0.860 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.430 0.570 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.000 1.000 38 H -0.019 1.019 39 H 0.266 0.734 40 H 0.063 0.937 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.847 -26.301 -2.472 27.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.252 6.252 3 C 0.356 3.644 4 O -0.368 6.368 5 C -0.013 4.013 6 N -0.191 5.191 7 C 0.065 3.935 8 C -0.140 4.140 9 N -0.237 5.237 10 C 0.173 3.827 11 O -0.275 6.275 12 C -0.029 4.029 13 O -0.213 6.213 14 C 0.032 3.968 15 C -0.119 4.119 16 N -0.199 5.199 17 C 0.050 3.950 18 C -0.564 4.564 19 H 0.083 0.917 20 C -0.198 4.198 21 N -0.576 5.576 22 Si 0.799 3.201 23 H -0.198 1.198 24 H -0.185 1.185 25 H -0.207 1.207 26 C -0.131 4.131 27 H 0.158 0.842 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.295 0.705 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.018 0.982 38 H -0.001 1.001 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.763 -26.488 -2.554 27.456 hybrid contribution -0.702 2.309 -0.162 2.418 sum 6.062 -24.179 -2.716 25.075 Atomic orbital electron populations 1.23713 0.73600 1.06303 1.02941 1.86636 1.25428 1.30101 1.83004 1.20487 0.87185 0.82606 0.74076 1.90980 1.65551 1.36493 1.43736 1.21016 0.92579 0.88936 0.98784 1.68419 1.08291 1.29250 1.13134 1.24033 0.86291 0.94381 0.88804 1.20870 0.99307 0.87905 1.05920 1.67943 1.42763 0.98143 1.14857 1.19938 0.85647 0.86774 0.90346 1.84747 1.75465 1.31220 1.36103 1.20722 0.91290 0.87407 1.03483 1.86201 1.70892 1.34309 1.29856 1.24130 0.96073 0.93207 0.83416 1.23932 0.97451 0.93849 0.96660 1.68933 1.04414 1.04474 1.42129 1.19931 0.94827 0.85843 0.94383 1.21394 1.36909 0.91422 1.06663 0.91731 1.25994 0.95289 1.00366 0.98189 1.70095 1.42851 1.14773 1.29841 0.85303 0.78988 0.77443 0.78403 1.19839 1.18526 1.20675 1.24337 0.95876 0.93956 0.98932 0.84231 0.91520 0.91680 0.87352 0.87599 0.87457 0.70549 0.86977 0.89166 0.92591 0.98184 1.00095 0.92558 0.91886 0.87844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.34 -7.48 10.42 -56.03 -0.58 -8.06 16 3 C 0.52 13.96 7.96 70.40 0.56 14.52 16 4 O -0.48 -15.32 14.04 26.88 0.38 -14.94 16 5 C 0.13 3.45 6.80 41.83 0.28 3.74 16 6 N -0.47 -10.61 10.13 -177.17 -1.80 -12.40 16 7 C 0.33 6.31 7.64 138.81 1.06 7.37 16 8 C -0.08 -0.76 10.31 71.23 0.73 -0.03 16 9 N -0.51 -11.15 10.33 -300.43 -3.10 -14.26 16 10 C 0.37 8.94 7.86 85.14 0.67 9.61 16 11 O -0.46 -10.47 13.43 -77.05 -1.03 -11.51 16 12 C 0.02 0.63 5.71 23.15 0.13 0.77 16 13 O -0.30 -9.77 8.48 -63.79 -0.54 -10.31 16 14 C 0.09 2.82 3.97 30.94 0.12 2.94 16 15 C 0.01 0.39 7.12 83.58 0.59 0.99 16 16 N -0.48 -21.19 6.32 -932.86 -5.89 -27.08 16 17 C 0.18 9.74 4.57 85.55 0.39 10.13 16 18 C -0.53 -30.42 9.39 25.60 0.24 -30.18 16 19 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 20 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 21 N -0.94 -57.24 13.29 21.45 0.28 -56.95 16 22 Si 0.97 44.53 29.54 68.60 2.03 46.55 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 24 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 C 0.00 -0.07 7.55 83.58 0.63 0.56 16 27 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.43 5.77 9.06 -74.06 -0.67 5.10 16 34 H 0.11 3.18 7.96 -2.38 -0.02 3.16 16 35 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 36 H 0.06 2.38 7.91 -2.39 -0.02 2.36 16 37 H 0.00 0.00 8.08 -2.38 -0.02 -0.02 16 38 H -0.02 -1.10 7.30 -2.39 -0.02 -1.12 16 39 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 40 H 0.06 2.52 7.42 -2.39 -0.02 2.51 16 41 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -75.78 361.15 -2.77 -78.55 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 0.41 Total: 7.93 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: 7.08 Total: 22.48 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -10.50 Total: -110.69 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -1.78 Total: -44.82 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -75.78 -2.77 -78.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234565628.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.608 kcal (2) G-P(sol) polarization free energy of solvation -75.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds