Wall clock time and date at job start Tue Mar 31 2020 14:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36001 * 116.99971 * 2 1 4 4 C 1.38164 * 119.99982 * 0.02562 * 3 2 1 5 5 C 1.39747 * 119.84382 * 180.02562 * 4 3 2 6 6 C 1.43198 * 120.07780 * 180.02562 * 5 4 3 7 7 N 5.84109 * 81.26353 * 0.02562 * 2 1 3 8 8 C 1.39727 * 119.84771 * 359.97438 * 5 4 3 9 9 C 1.37828 * 119.99354 * 0.02562 * 8 5 4 10 10 C 1.50699 * 119.92186 * 180.02562 * 9 8 5 11 11 C 1.38801 * 120.15760 * 359.72230 * 9 8 5 12 12 O 1.35839 * 119.92397 * 180.27622 * 11 9 8 13 13 C 1.42912 * 116.99792 * 270.27518 * 12 11 9 14 14 H 1.09000 * 109.47019 * 30.00822 * 13 12 11 15 15 C 1.50700 * 109.47252 * 270.00198 * 13 12 11 16 16 H 1.07993 * 119.99787 * 125.35127 * 15 13 12 17 17 C 1.37871 * 119.99840 * 305.35117 * 15 13 12 18 18 N 1.31516 * 120.00563 * 8.27873 * 17 15 13 19 19 Si 1.86802 * 119.99881 * 188.27784 * 17 15 13 20 20 H 1.48499 * 109.47169 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47143 * 120.00018 * 19 17 15 22 22 H 1.48497 * 109.47243 * 240.00274 * 19 17 15 23 23 C 1.50706 * 109.46815 * 149.99976 * 13 12 11 24 24 C 1.38240 * 119.99726 * 29.62550 * 23 13 12 25 25 C 1.38231 * 119.99675 * 179.80733 * 24 23 13 26 26 C 1.38243 * 119.99989 * 0.39574 * 25 24 23 27 27 C 1.38234 * 119.99930 * 359.86234 * 26 25 24 28 28 C 1.38231 * 119.99777 * 209.89425 * 23 13 12 29 29 H 1.08993 * 109.47379 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46620 * 300.00012 * 1 2 3 31 31 H 1.09002 * 109.47037 * 59.99714 * 1 2 3 32 32 H 1.08002 * 120.07790 * 359.96996 * 4 3 2 33 33 H 1.07996 * 120.00361 * 180.02562 * 8 5 4 34 34 H 1.09003 * 109.47247 * 89.99852 * 10 9 8 35 35 H 1.08992 * 109.47109 * 210.00243 * 10 9 8 36 36 H 1.09002 * 109.46994 * 330.00049 * 10 9 8 37 37 H 0.96997 * 120.00210 * 179.97438 * 18 17 15 38 38 H 1.07997 * 119.99834 * 359.97438 * 24 23 13 39 39 H 1.07997 * 120.00255 * 180.23148 * 25 24 23 40 40 H 1.08003 * 119.99980 * 179.83217 * 26 25 24 41 41 H 1.07997 * 119.99921 * 179.97438 * 27 26 25 42 42 H 1.07996 * 120.00284 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2940 2.3705 0.0005 5 6 1.9318 3.6139 0.0000 6 6 1.1568 4.8181 0.0011 7 7 0.5419 5.7733 0.0026 8 6 3.3275 3.6796 -0.0005 9 6 4.0718 2.5195 -0.0011 10 6 5.5771 2.5922 -0.0011 11 6 3.4383 1.2846 0.0047 12 8 4.1766 0.1443 0.0099 13 6 4.5340 -0.4028 -1.2611 14 1 4.6270 0.4022 -1.9900 15 6 3.4670 -1.3673 -1.7109 16 1 2.9957 -1.2403 -2.6742 17 6 3.0926 -2.4118 -0.8925 18 7 3.5439 -2.4752 0.3411 19 14 1.9440 -3.7371 -1.5360 20 1 1.5823 -3.4373 -2.9447 21 1 2.6236 -5.0558 -1.4699 22 1 0.7137 -3.7719 -0.7052 23 6 5.8498 -1.1283 -1.1435 24 6 6.2108 -1.7151 0.0550 25 6 7.4158 -2.3839 0.1617 26 6 8.2635 -2.4589 -0.9277 27 6 7.9049 -1.8675 -2.1246 28 6 6.6980 -1.2021 -2.2324 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2154 2.3155 0.0005 33 1 3.8230 4.6391 -0.0006 34 1 5.9400 2.6093 1.0266 35 1 5.9829 1.7211 -0.5153 36 1 5.8970 3.4989 -0.5145 37 1 3.2801 -3.2098 0.9170 38 1 5.5501 -1.6532 0.9071 39 1 7.6963 -2.8455 1.0969 40 1 9.2063 -2.9791 -0.8435 41 1 8.5673 -1.9258 -2.9755 42 1 6.4177 -0.7403 -3.1676 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234864835.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:29 Heat of formation + Delta-G solvation = 15.397856 kcal Electronic energy + Delta-G solvation = -27458.931858 eV Core-core repulsion = 23756.388134 eV Total energy + Delta-G solvation = -3702.543724 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.00831 -38.37918 -37.41959 -36.87561 -35.64360 -32.95871 -31.86814 -30.77757 -29.88849 -29.34155 -27.15623 -26.87058 -26.13021 -23.54209 -22.59729 -21.48223 -21.10678 -20.24364 -18.34222 -17.35943 -16.45840 -16.17479 -16.03276 -15.71584 -15.16265 -14.77144 -14.40541 -14.03918 -13.77186 -13.62389 -13.34836 -13.32833 -13.25880 -13.06359 -12.76237 -12.63169 -12.36165 -12.11714 -11.84904 -11.63994 -11.60592 -11.46455 -11.28396 -11.01075 -10.96339 -10.66344 -10.53349 -10.39709 -10.17170 -10.03281 -9.50397 -8.80284 -8.39292 -8.23260 -7.92584 -7.62013 -7.45748 -6.07173 -4.20958 1.06011 1.73202 2.33106 2.44442 2.80562 3.14684 3.21884 3.30418 3.33526 3.86613 4.06149 4.12106 4.33864 4.77210 4.86251 5.09063 5.25894 5.31608 5.40061 5.56411 5.58072 5.68919 5.70874 5.79856 5.85240 5.86957 5.92302 6.03489 6.06006 6.24715 6.29324 6.44548 6.48752 6.60710 6.65551 6.73946 6.80123 6.96562 6.97513 7.14825 7.37467 7.56054 7.63113 7.76069 7.83393 7.96777 8.00543 8.09265 8.58677 9.00904 9.48514 10.91149 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012138 B = 0.005468 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.161630 B = 5119.732835 C = 6885.202817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.249 6.249 3 C 0.120 3.880 4 C -0.170 4.170 5 C -0.030 4.030 6 C 0.271 3.729 7 N -0.444 5.444 8 C -0.095 4.095 9 C -0.098 4.098 10 C -0.104 4.104 11 C 0.145 3.855 12 O -0.300 6.300 13 C 0.254 3.746 14 H 0.021 0.979 15 C -0.537 4.537 16 H 0.060 0.940 17 C 0.105 3.895 18 N -0.826 5.826 19 Si 0.878 3.122 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.033 4.033 24 C -0.066 4.066 25 C -0.142 4.142 26 C -0.148 4.148 27 C -0.139 4.139 28 C -0.129 4.129 29 H 0.093 0.907 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.260 0.740 38 H 0.151 0.849 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.143 4.308 0.190 4.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.159 6.159 3 C 0.073 3.927 4 C -0.191 4.191 5 C -0.034 4.034 6 C -0.043 4.043 7 N -0.120 5.120 8 C -0.116 4.116 9 C -0.099 4.099 10 C -0.161 4.161 11 C 0.097 3.903 12 O -0.217 6.217 13 C 0.201 3.799 14 H 0.039 0.961 15 C -0.573 4.573 16 H 0.079 0.921 17 C -0.104 4.104 18 N -0.459 5.459 19 Si 0.706 3.294 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.034 4.034 24 C -0.084 4.084 25 C -0.160 4.160 26 C -0.167 4.167 27 C -0.157 4.157 28 C -0.147 4.147 29 H 0.111 0.889 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.168 0.832 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.341 5.344 0.507 5.533 hybrid contribution -0.942 -1.201 -0.557 1.624 sum 0.399 4.144 -0.050 4.163 Atomic orbital electron populations 1.23027 0.81032 1.03424 1.00044 1.86714 1.18484 1.23717 1.87003 1.19404 0.92317 0.84690 0.96304 1.20997 0.99768 0.90586 1.07761 1.15543 0.91511 0.86454 1.09900 1.25813 0.92890 0.92780 0.92804 1.81191 1.09260 1.11098 1.10481 1.20644 0.90995 0.98096 1.01899 1.19922 0.96836 0.91319 1.01857 1.20630 0.90196 1.02696 1.02555 1.18213 0.87152 0.87726 0.97214 1.86260 1.68510 1.34963 1.31965 1.18859 0.90019 0.90957 0.80052 0.96081 1.21238 1.20872 1.11530 1.03623 0.92134 1.24742 0.94790 0.96752 0.94162 1.69954 1.41215 1.29666 1.05075 0.86789 0.81069 0.82283 0.79305 1.19803 1.20993 1.20892 1.20018 0.93045 0.97457 0.92874 1.21494 0.93805 0.93597 0.99496 1.21143 0.95811 1.01263 0.97824 1.20840 0.99488 1.02250 0.94084 1.20771 0.97168 1.00651 0.97156 1.20772 0.94249 1.01437 0.98224 0.88886 0.93627 0.93388 0.85268 0.85562 0.91074 0.90575 0.92028 0.92997 0.83181 0.87781 0.88022 0.87736 0.87455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 101.05 0.99 1.30 16 2 O -0.25 -4.93 8.58 -34.42 -0.30 -5.23 16 3 C 0.12 2.22 6.69 -39.19 -0.26 1.96 16 4 C -0.17 -2.61 8.74 -39.05 -0.34 -2.95 16 5 C -0.03 -0.44 5.74 -106.85 -0.61 -1.06 16 6 C 0.27 4.02 15.33 -22.47 -0.34 3.68 16 7 N -0.44 -7.19 18.54 41.84 0.78 -6.42 16 8 C -0.10 -1.34 9.39 -39.18 -0.37 -1.70 16 9 C -0.10 -1.57 5.88 -104.56 -0.62 -2.18 16 10 C -0.10 -1.46 9.78 36.01 0.35 -1.11 16 11 C 0.14 2.78 5.54 -38.95 -0.22 2.57 16 12 O -0.30 -6.56 6.53 -33.91 -0.22 -6.78 16 13 C 0.25 5.63 1.87 -29.03 -0.05 5.57 16 14 H 0.02 0.46 7.85 -51.93 -0.41 0.05 16 15 C -0.54 -13.07 7.83 -34.44 -0.27 -13.34 16 16 H 0.06 1.51 7.83 -52.49 -0.41 1.10 16 17 C 0.10 2.56 4.59 -17.82 -0.08 2.48 16 18 N -0.83 -20.47 9.51 55.43 0.53 -19.94 16 19 Si 0.88 19.57 29.55 -169.99 -5.02 14.55 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 C -0.03 -0.71 4.83 -104.62 -0.50 -1.22 16 24 C -0.07 -1.40 8.06 -39.58 -0.32 -1.72 16 25 C -0.14 -2.69 10.05 -39.58 -0.40 -3.08 16 26 C -0.15 -2.58 10.05 -39.58 -0.40 -2.98 16 27 C -0.14 -2.43 10.05 -39.58 -0.40 -2.83 16 28 C -0.13 -2.48 9.70 -39.58 -0.38 -2.86 16 29 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 31 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 32 H 0.13 1.73 6.28 -52.49 -0.33 1.40 16 33 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 1.21 6.87 -51.93 -0.36 0.85 16 36 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 37 H 0.26 6.30 8.31 -40.82 -0.34 5.96 16 38 H 0.15 3.51 5.96 -52.49 -0.31 3.20 16 39 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 40 H 0.10 1.49 8.06 -52.48 -0.42 1.06 16 41 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.11 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 361.02 15.07 5.44 5.44 Total: -1.00 -26.59 361.02 -8.15 -34.74 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.13 Total: 3.11 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -4.22 Total: -19.48 kcal Atomic # 7 Polarization: -27.66 SS G_CDS: 1.30 Total: -26.36 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -0.52 Total: -12.01 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -26.59 -8.15 -34.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234864835.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.140 kcal (2) G-P(sol) polarization free energy of solvation -26.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds