Wall clock time and date at job start Tue Mar 31 2020 14:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36001 * 116.99971 * 2 1 4 4 C 1.38164 * 119.99982 * 0.02562 * 3 2 1 5 5 C 1.39747 * 119.84382 * 180.02562 * 4 3 2 6 6 C 1.43198 * 120.07780 * 180.02562 * 5 4 3 7 7 N 5.84109 * 81.26353 * 0.02562 * 2 1 3 8 8 C 1.39727 * 119.84771 * 359.97438 * 5 4 3 9 9 C 1.37828 * 119.99354 * 0.02562 * 8 5 4 10 10 C 1.50699 * 119.92186 * 180.02562 * 9 8 5 11 11 C 1.38801 * 120.15760 * 359.72230 * 9 8 5 12 12 O 1.35839 * 119.92397 * 180.27622 * 11 9 8 13 13 C 1.42912 * 116.99792 * 270.27518 * 12 11 9 14 14 H 1.09000 * 109.47019 * 30.00822 * 13 12 11 15 15 C 1.50700 * 109.47252 * 270.00198 * 13 12 11 16 16 H 1.07993 * 119.99787 * 125.35127 * 15 13 12 17 17 C 1.37871 * 119.99840 * 305.35117 * 15 13 12 18 18 N 1.31516 * 120.00563 * 8.27873 * 17 15 13 19 19 Si 1.86802 * 119.99881 * 188.27784 * 17 15 13 20 20 H 1.48499 * 109.47169 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47143 * 120.00018 * 19 17 15 22 22 H 1.48497 * 109.47243 * 240.00274 * 19 17 15 23 23 C 1.50706 * 109.46815 * 149.99976 * 13 12 11 24 24 C 1.38240 * 119.99726 * 29.62550 * 23 13 12 25 25 C 1.38231 * 119.99675 * 179.80733 * 24 23 13 26 26 C 1.38243 * 119.99989 * 0.39574 * 25 24 23 27 27 C 1.38234 * 119.99930 * 359.86234 * 26 25 24 28 28 C 1.38231 * 119.99777 * 209.89425 * 23 13 12 29 29 H 1.08993 * 109.47379 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46620 * 300.00012 * 1 2 3 31 31 H 1.09002 * 109.47037 * 59.99714 * 1 2 3 32 32 H 1.08002 * 120.07790 * 359.96996 * 4 3 2 33 33 H 1.07996 * 120.00361 * 180.02562 * 8 5 4 34 34 H 1.09003 * 109.47247 * 89.99852 * 10 9 8 35 35 H 1.08992 * 109.47109 * 210.00243 * 10 9 8 36 36 H 1.09002 * 109.46994 * 330.00049 * 10 9 8 37 37 H 0.96997 * 120.00210 * 179.97438 * 18 17 15 38 38 H 1.07997 * 119.99834 * 359.97438 * 24 23 13 39 39 H 1.07997 * 120.00255 * 180.23148 * 25 24 23 40 40 H 1.08003 * 119.99980 * 179.83217 * 26 25 24 41 41 H 1.07997 * 119.99921 * 179.97438 * 27 26 25 42 42 H 1.07996 * 120.00284 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2940 2.3705 0.0005 5 6 1.9318 3.6139 0.0000 6 6 1.1568 4.8181 0.0011 7 7 0.5419 5.7733 0.0026 8 6 3.3275 3.6796 -0.0005 9 6 4.0718 2.5195 -0.0011 10 6 5.5771 2.5922 -0.0011 11 6 3.4383 1.2846 0.0047 12 8 4.1766 0.1443 0.0099 13 6 4.5340 -0.4028 -1.2611 14 1 4.6270 0.4022 -1.9900 15 6 3.4670 -1.3673 -1.7109 16 1 2.9957 -1.2403 -2.6742 17 6 3.0926 -2.4118 -0.8925 18 7 3.5439 -2.4752 0.3411 19 14 1.9440 -3.7371 -1.5360 20 1 1.5823 -3.4373 -2.9447 21 1 2.6236 -5.0558 -1.4699 22 1 0.7137 -3.7719 -0.7052 23 6 5.8498 -1.1283 -1.1435 24 6 6.2108 -1.7151 0.0550 25 6 7.4158 -2.3839 0.1617 26 6 8.2635 -2.4589 -0.9277 27 6 7.9049 -1.8675 -2.1246 28 6 6.6980 -1.2021 -2.2324 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2154 2.3155 0.0005 33 1 3.8230 4.6391 -0.0006 34 1 5.9400 2.6093 1.0266 35 1 5.9829 1.7211 -0.5153 36 1 5.8970 3.4989 -0.5145 37 1 3.2801 -3.2098 0.9170 38 1 5.5501 -1.6532 0.9071 39 1 7.6963 -2.8455 1.0969 40 1 9.2063 -2.9791 -0.8435 41 1 8.5673 -1.9258 -2.9755 42 1 6.4177 -0.7403 -3.1676 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234864835.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:28 Heat of formation + Delta-G solvation = 4.973784 kcal Electronic energy + Delta-G solvation = -27459.383879 eV Core-core repulsion = 23756.388134 eV Total energy + Delta-G solvation = -3702.995746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.33678 -39.85906 -38.74492 -38.26456 -36.97893 -34.65000 -33.14420 -32.33232 -31.35049 -30.67838 -28.53699 -28.35808 -27.35949 -25.09445 -24.03816 -22.93992 -22.36657 -21.77580 -19.58905 -18.97326 -17.88843 -17.56215 -17.49919 -17.07164 -16.57883 -16.46054 -15.81904 -15.46039 -15.11049 -15.00532 -14.76058 -14.64429 -14.53355 -14.43868 -14.05281 -13.95068 -13.80310 -13.46242 -13.26902 -13.08176 -12.91560 -12.79237 -12.71929 -12.67168 -12.45774 -12.12365 -12.07304 -11.77992 -11.62110 -11.52541 -11.14439 -10.56039 -10.03026 -9.50354 -9.40575 -9.12924 -8.83991 -7.88917 -6.07816 -0.21832 0.49020 0.84687 0.97370 1.39782 1.46289 1.52029 1.59228 1.89835 2.50308 2.62859 2.79148 2.87413 3.28473 3.39128 3.51104 3.89632 4.17253 4.21609 4.33663 4.38173 4.41648 4.45365 4.46859 4.56918 4.66789 4.68898 4.76364 4.77181 4.91151 4.94972 5.13311 5.18159 5.20779 5.27097 5.39624 5.48236 5.55769 5.64569 5.74801 5.83467 5.91259 6.08884 6.22152 6.33701 6.42266 6.55292 6.63470 6.81747 7.40942 7.66939 9.06927 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012138 B = 0.005468 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.161630 B = 5119.732835 C = 6885.202817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.287 6.287 3 C 0.102 3.898 4 C -0.162 4.162 5 C -0.020 4.020 6 C 0.290 3.710 7 N -0.461 5.461 8 C -0.083 4.083 9 C -0.094 4.094 10 C -0.102 4.102 11 C 0.100 3.900 12 O -0.314 6.314 13 C 0.262 3.738 14 H 0.013 0.987 15 C -0.551 4.551 16 H 0.042 0.958 17 C 0.082 3.918 18 N -0.841 5.841 19 Si 0.914 3.086 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.278 1.278 23 C -0.054 4.054 24 C -0.084 4.084 25 C -0.149 4.149 26 C -0.143 4.143 27 C -0.134 4.134 28 C -0.141 4.141 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.150 0.850 33 H 0.161 0.839 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.254 0.746 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.160 5.573 -0.192 6.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.199 6.199 3 C 0.055 3.945 4 C -0.183 4.183 5 C -0.023 4.023 6 C -0.024 4.024 7 N -0.137 5.137 8 C -0.104 4.104 9 C -0.095 4.095 10 C -0.158 4.158 11 C 0.053 3.947 12 O -0.231 6.231 13 C 0.209 3.791 14 H 0.031 0.969 15 C -0.587 4.587 16 H 0.060 0.940 17 C -0.125 4.125 18 N -0.474 5.474 19 Si 0.742 3.258 20 H -0.201 1.201 21 H -0.216 1.216 22 H -0.203 1.203 23 C -0.055 4.055 24 C -0.103 4.103 25 C -0.167 4.167 26 C -0.161 4.161 27 C -0.152 4.152 28 C -0.159 4.159 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.167 0.833 33 H 0.179 0.821 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.064 0.936 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.156 0.844 41 H 0.158 0.842 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.346 6.627 0.129 7.031 hybrid contribution -1.254 -1.461 -0.438 1.974 sum 1.092 5.166 -0.309 5.290 Atomic orbital electron populations 1.23219 0.79150 1.03924 1.01805 1.86637 1.20753 1.25012 1.87497 1.19574 0.92416 0.85207 0.97350 1.21128 1.00652 0.89882 1.06656 1.15576 0.91847 0.86033 1.08868 1.25581 0.92326 0.92293 0.92179 1.81231 1.09780 1.11714 1.10986 1.20940 0.90673 0.98764 0.99983 1.20127 0.97938 0.90711 1.00728 1.20658 0.88857 1.03133 1.03160 1.18743 0.87787 0.88139 0.99990 1.86197 1.69032 1.36413 1.31463 1.18647 0.89999 0.90274 0.80224 0.96929 1.21278 1.21897 1.12625 1.02940 0.94002 1.25056 0.95533 0.97693 0.94255 1.70078 1.42189 1.29698 1.05466 0.86230 0.80271 0.80593 0.78724 1.20139 1.21590 1.20327 1.20077 0.93429 0.98212 0.93757 1.21287 0.94812 0.95404 0.98792 1.21373 0.95141 1.00826 0.99396 1.21238 1.00296 1.01346 0.93205 1.21178 0.96602 0.99013 0.98396 1.20999 0.94940 1.02005 0.97960 0.89153 0.91502 0.91821 0.83277 0.82111 0.90279 0.92956 0.88843 0.93595 0.86030 0.86104 0.84435 0.84242 0.86600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.42 9.81 113.37 1.11 1.53 16 2 O -0.29 -11.72 8.58 -79.53 -0.68 -12.40 16 3 C 0.10 3.80 6.69 22.53 0.15 3.95 16 4 C -0.16 -4.79 8.74 22.62 0.20 -4.59 16 5 C -0.02 -0.53 5.74 -21.31 -0.12 -0.65 16 6 C 0.29 7.81 15.33 88.33 1.35 9.17 16 7 N -0.46 -13.79 18.54 19.00 0.35 -13.44 16 8 C -0.08 -2.11 9.39 22.53 0.21 -1.90 16 9 C -0.09 -2.92 5.88 -19.83 -0.12 -3.04 16 10 C -0.10 -2.74 9.78 71.24 0.70 -2.04 16 11 C 0.10 3.95 5.54 22.68 0.13 4.07 16 12 O -0.31 -14.37 6.53 -77.71 -0.51 -14.88 16 13 C 0.26 12.14 1.87 29.10 0.05 12.19 16 14 H 0.01 0.58 7.85 -2.39 -0.02 0.56 16 15 C -0.55 -28.02 7.83 25.60 0.20 -27.82 16 16 H 0.04 2.20 7.83 -2.91 -0.02 2.18 16 17 C 0.08 4.15 4.59 84.65 0.39 4.54 16 18 N -0.84 -43.48 9.51 21.45 0.20 -43.28 16 19 Si 0.91 41.17 29.55 68.60 2.03 43.19 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 23 C -0.05 -2.38 4.83 -19.86 -0.10 -2.48 16 24 C -0.08 -3.71 8.06 22.27 0.18 -3.53 16 25 C -0.15 -5.54 10.05 22.27 0.22 -5.31 16 26 C -0.14 -4.60 10.05 22.27 0.22 -4.38 16 27 C -0.13 -4.36 10.05 22.27 0.22 -4.14 16 28 C -0.14 -5.39 9.70 22.27 0.22 -5.17 16 29 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.07 1.65 7.66 -2.39 -0.02 1.63 16 31 H 0.06 1.64 7.66 -2.39 -0.02 1.62 16 32 H 0.15 3.71 6.28 -2.91 -0.02 3.69 16 33 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.05 1.68 6.87 -2.39 -0.02 1.66 16 36 H 0.09 1.87 8.08 -2.39 -0.02 1.86 16 37 H 0.25 12.89 8.31 -92.71 -0.77 12.12 16 38 H 0.12 6.02 5.96 -2.91 -0.02 6.00 16 39 H 0.12 3.95 8.06 -2.91 -0.02 3.92 16 40 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 41 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 42 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -59.82 361.02 7.66 -52.16 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 1.04 Total: 18.23 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 5.22 Total: -29.59 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.56 Total: -56.72 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -1.19 Total: -27.28 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.19 kcal Total: -59.82 7.66 -52.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234864835.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.137 kcal (2) G-P(sol) polarization free energy of solvation -59.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds