Wall clock time and date at job start Tue Mar 31 2020 14:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42909 * 113.99460 * 2 1 4 4 O 1.42901 * 109.47166 * 74.99576 * 3 2 1 5 5 C 1.35781 * 116.99870 * 74.99952 * 4 3 2 6 6 C 1.38572 * 120.13878 * 359.97438 * 5 4 3 7 7 C 1.38182 * 120.08412 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.82150 * 180.02562 * 7 6 5 9 9 C 1.38506 * 120.36104 * 0.02562 * 7 6 5 10 10 C 1.37878 * 120.27859 * 359.70106 * 9 7 6 11 11 C 1.39592 * 119.90499 * 0.54719 * 10 9 7 12 12 C 1.47900 * 120.17699 * 179.74723 * 11 10 9 13 13 C 1.40038 * 119.50435 * 130.01486 * 12 11 10 14 14 C 1.35966 * 121.19031 * 180.26536 * 13 12 11 15 15 C 1.41065 * 120.11056 * 359.44659 * 14 13 12 16 16 C 1.40409 * 120.48440 * 180.25115 * 15 14 13 17 17 H 1.07995 * 120.00039 * 150.01860 * 16 15 14 18 18 C 1.40289 * 119.99907 * 330.01578 * 16 15 14 19 19 N 1.30646 * 119.99475 * 161.92028 * 18 16 15 20 20 Si 1.86790 * 119.99986 * 341.92325 * 18 16 15 21 21 H 1.48501 * 109.47529 * 95.39606 * 20 18 16 22 22 H 1.48505 * 109.47123 * 215.39383 * 20 18 16 23 23 H 1.48503 * 109.47650 * 335.39374 * 20 18 16 24 24 C 1.46663 * 119.03142 * 0.27684 * 15 14 13 25 25 C 1.43200 * 120.56258 * 179.97438 * 24 15 14 26 26 N 8.74641 * 69.73433 * 63.91301 * 2 1 3 27 27 C 1.39050 * 118.87548 * 359.97438 * 24 15 14 28 28 H 1.09004 * 109.46924 * 60.00511 * 1 2 3 29 29 H 1.09002 * 109.46647 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47435 * 300.00326 * 1 2 3 31 31 H 1.08996 * 109.46821 * 314.99300 * 3 2 1 32 32 H 1.08998 * 109.46324 * 194.99609 * 3 2 1 33 33 H 1.07997 * 119.95829 * 0.02562 * 6 5 4 34 34 H 1.09000 * 109.46719 * 89.99749 * 8 7 6 35 35 H 1.08992 * 109.47323 * 209.99907 * 8 7 6 36 36 H 1.09001 * 109.47113 * 330.00390 * 8 7 6 37 37 H 1.08002 * 119.86104 * 180.02562 * 9 7 6 38 38 H 1.07998 * 120.04674 * 180.30308 * 10 9 7 39 39 H 1.08002 * 119.40477 * 359.97438 * 13 12 11 40 40 H 1.08001 * 119.94759 * 179.72124 * 14 13 12 41 41 H 0.97003 * 119.99698 * 180.02562 * 19 18 16 42 42 H 1.07997 * 120.10402 * 179.97438 * 27 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 8 1.8852 1.8826 1.3013 5 6 2.7178 1.4138 2.2660 6 6 3.6361 0.4192 1.9695 7 6 4.4825 -0.0574 2.9523 8 6 5.4792 -1.1387 2.6231 9 6 4.4198 0.4531 4.2383 10 6 3.5157 1.4468 4.5484 11 6 2.6517 1.9331 3.5657 12 6 1.6757 2.9950 3.8932 13 6 1.5892 4.1283 3.0752 14 6 0.7082 5.1276 3.3473 15 6 -0.1491 5.0307 4.4633 16 6 -1.0656 6.0555 4.7486 17 1 -1.9988 5.8240 5.2403 18 6 -0.7689 7.3803 4.3950 19 7 -1.7251 8.2679 4.3267 20 14 0.9932 7.8751 4.0216 21 1 1.2244 7.8149 2.5560 22 1 1.2315 9.2593 4.5039 23 1 1.9248 6.9445 4.7083 24 6 -0.0688 3.8442 5.3217 25 6 -0.9231 3.7122 6.4633 26 7 -1.6005 3.6080 7.3691 27 6 0.8509 2.8496 5.0081 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.4941 1.9329 -0.7267 32 1 3.0648 1.2337 -0.2659 33 1 3.6903 0.0162 0.9690 34 1 6.4132 -0.6836 2.2934 35 1 5.6637 -1.7450 3.5098 36 1 5.0818 -1.7694 1.8278 37 1 5.0854 0.0749 5.0000 38 1 3.4733 1.8457 5.5511 39 1 2.2373 4.2124 2.2153 40 1 0.6615 5.9949 2.7054 41 1 -1.5201 9.1838 4.0818 42 1 0.9271 1.9677 5.6268 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240755189.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:41 Heat of formation + Delta-G solvation = -39.037884 kcal Electronic energy + Delta-G solvation = -26313.350094 eV Core-core repulsion = 22608.445859 eV Total energy + Delta-G solvation = -3704.904235 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.29596 -39.72291 -38.93883 -37.33829 -37.07609 -35.93455 -34.06887 -31.96838 -31.79822 -30.84485 -28.84082 -28.34670 -26.49134 -25.72656 -24.20795 -23.21728 -22.67198 -21.97192 -19.56560 -19.36350 -18.61507 -17.80722 -17.44609 -17.15876 -16.53750 -16.32891 -16.00936 -15.64344 -15.46941 -15.15990 -14.83222 -14.79084 -14.66204 -14.50722 -14.27149 -14.00878 -13.94958 -13.69842 -13.52806 -13.30463 -13.08785 -12.88593 -12.67036 -12.64758 -12.43682 -12.15418 -12.02422 -11.98501 -11.86234 -11.60837 -11.53020 -11.10737 -11.03107 -9.85515 -9.59885 -9.35521 -9.10240 -8.75310 -6.63823 0.18320 0.37070 0.63153 0.93019 1.28248 1.42173 1.52112 1.96018 2.07106 2.26244 2.43260 2.56025 2.77433 2.99812 3.44284 3.50432 3.93561 4.05791 4.13974 4.14830 4.20258 4.24770 4.44373 4.50152 4.53255 4.55229 4.59972 4.68771 4.84266 4.86012 4.87433 4.90098 4.93277 5.03119 5.12816 5.31525 5.34123 5.44745 5.53716 5.71170 5.72403 5.79995 5.87330 5.97280 6.02415 6.06982 6.19473 6.48758 6.57170 6.65438 6.87380 7.95634 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012639 B = 0.003958 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.811084 B = 7072.752514 C = 7529.823996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.409 6.409 3 C 0.201 3.799 4 O -0.335 6.335 5 C 0.122 3.878 6 C -0.199 4.199 7 C -0.066 4.066 8 C -0.109 4.109 9 C -0.155 4.155 10 C -0.089 4.089 11 C -0.069 4.069 12 C -0.167 4.167 13 C -0.010 4.010 14 C -0.242 4.242 15 C 0.123 3.877 16 C -0.451 4.451 17 H 0.053 0.947 18 C 0.051 3.949 19 N -0.815 5.815 20 Si 0.965 3.035 21 H -0.241 1.241 22 H -0.274 1.274 23 H -0.243 1.243 24 C -0.189 4.189 25 C 0.303 3.697 26 N -0.523 5.523 27 C 0.003 3.997 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.141 0.859 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.143 0.857 38 H 0.131 0.869 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.305 0.695 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.657 -13.021 -12.037 23.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.329 6.329 3 C 0.089 3.911 4 O -0.251 6.251 5 C 0.077 3.923 6 C -0.217 4.217 7 C -0.066 4.066 8 C -0.166 4.166 9 C -0.173 4.173 10 C -0.107 4.107 11 C -0.070 4.070 12 C -0.168 4.168 13 C -0.028 4.028 14 C -0.261 4.261 15 C 0.118 3.882 16 C -0.478 4.478 17 H 0.071 0.929 18 C -0.169 4.169 19 N -0.438 5.438 20 Si 0.786 3.214 21 H -0.165 1.165 22 H -0.201 1.201 23 H -0.166 1.166 24 C -0.195 4.195 25 C -0.007 4.007 26 N -0.202 5.202 27 C -0.018 4.018 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.049 0.951 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.159 0.841 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.160 0.840 38 H 0.149 0.851 39 H 0.140 0.860 40 H 0.132 0.868 41 H 0.116 0.884 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.375 -12.947 -10.655 22.086 hybrid contribution -0.365 0.881 -0.266 0.989 sum 14.011 -12.066 -10.920 21.474 Atomic orbital electron populations 1.22896 0.79614 1.03672 1.00683 1.87983 1.21784 1.29412 1.93692 1.24560 1.00849 0.83331 0.82390 1.86314 1.57600 1.60476 1.20707 1.19137 0.90555 0.94073 0.88485 1.21191 0.98968 1.00254 1.01321 1.20068 0.96488 0.97250 0.92825 1.20818 0.97150 0.95723 1.02893 1.21104 1.00706 0.98538 0.97000 1.21281 0.94280 0.96534 0.98623 1.18247 0.98776 0.98586 0.91372 1.17920 1.02706 0.96813 0.99403 1.20613 0.94377 0.91486 0.96356 1.20672 1.03772 1.01926 0.99756 1.18605 0.89936 0.90304 0.89355 1.19522 1.03130 0.92599 1.32515 0.92856 1.27135 1.04052 0.95537 0.90191 1.69612 1.37055 1.05933 1.31203 0.85488 0.76965 0.77894 0.81070 1.16494 1.20066 1.16592 1.16909 1.04754 1.02281 0.95530 1.25955 0.91731 0.90762 0.92215 1.80999 1.13014 1.11864 1.14359 1.20833 0.91135 0.95086 0.94714 0.91948 0.88396 0.95078 0.86015 0.86487 0.84150 0.90010 0.90427 0.91100 0.83967 0.85075 0.85968 0.86841 0.88426 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.89 113.37 1.23 1.77 16 2 O -0.41 -8.94 10.19 -126.21 -1.29 -10.22 16 3 C 0.20 3.95 6.39 113.37 0.72 4.67 16 4 O -0.34 -9.40 8.47 -68.33 -0.58 -9.98 16 5 C 0.12 3.51 6.51 22.81 0.15 3.66 16 6 C -0.20 -4.72 8.42 22.34 0.19 -4.53 16 7 C -0.07 -1.40 5.88 -19.81 -0.12 -1.52 16 8 C -0.11 -1.53 10.00 71.24 0.71 -0.82 16 9 C -0.16 -3.47 9.67 22.25 0.22 -3.26 16 10 C -0.09 -2.42 9.48 22.51 0.21 -2.21 16 11 C -0.07 -2.18 5.46 -19.94 -0.11 -2.29 16 12 C -0.17 -6.14 5.30 -19.99 -0.11 -6.24 16 13 C -0.01 -0.36 8.62 22.18 0.19 -0.17 16 14 C -0.24 -10.28 7.10 22.44 0.16 -10.12 16 15 C 0.12 5.93 5.26 -19.86 -0.10 5.83 16 16 C -0.45 -24.07 9.01 23.30 0.21 -23.86 16 17 H 0.05 3.21 7.65 -2.91 -0.02 3.19 16 18 C 0.05 2.53 5.41 85.37 0.46 3.00 16 19 N -0.82 -41.61 13.92 21.89 0.30 -41.30 16 20 Si 0.97 38.24 24.52 68.60 1.68 39.92 16 21 H -0.24 -8.60 6.71 99.48 0.67 -7.93 16 22 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 23 H -0.24 -9.80 6.86 99.48 0.68 -9.12 16 24 C -0.19 -8.63 5.93 -19.64 -0.12 -8.74 16 25 C 0.30 14.68 14.36 88.33 1.27 15.95 16 26 N -0.52 -26.31 18.54 19.00 0.35 -25.96 16 27 C 0.00 0.12 9.19 22.75 0.21 0.32 16 28 H 0.06 0.96 8.11 -2.39 -0.02 0.94 16 29 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.03 0.75 8.03 -2.39 -0.02 0.73 16 31 H 0.12 1.84 8.01 -2.39 -0.02 1.82 16 32 H 0.12 1.77 6.70 -2.39 -0.02 1.75 16 33 H 0.14 2.84 5.85 -2.91 -0.02 2.82 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 36 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 37 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 38 H 0.13 3.35 8.03 -2.91 -0.02 3.32 16 39 H 0.12 4.04 7.58 -2.91 -0.02 4.01 16 40 H 0.11 4.64 4.75 -2.91 -0.01 4.63 16 41 H 0.30 13.65 8.29 -92.71 -0.77 12.88 16 42 H 0.12 4.29 8.02 -2.91 -0.02 4.26 16 Total: -1.00 -62.53 360.75 6.85 -55.68 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.99 Total: 20.42 kcal Atomic # 6 Polarization: -33.94 SS G_CDS: 5.38 Total: -28.56 kcal Atomic # 7 Polarization: -67.92 SS G_CDS: 0.66 Total: -67.26 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -1.86 Total: -20.20 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 1.68 Total: 39.92 kcal Total: -62.53 6.85 -55.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240755189.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.644 kcal (2) G-P(sol) polarization free energy of solvation -62.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds