Wall clock time and date at job start Tue Mar 31 2020 13:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99785 * 2 1 4 4 O 1.42895 * 109.47516 * 74.99544 * 3 2 1 5 5 C 1.35813 * 116.99876 * 74.99786 * 4 3 2 6 6 C 1.38978 * 119.91284 * 0.02562 * 5 4 3 7 7 C 1.37755 * 120.08410 * 180.02562 * 6 5 4 8 8 C 1.39704 * 119.91462 * 359.97438 * 7 6 5 9 9 C 1.47917 * 120.08696 * 179.97438 * 8 7 6 10 10 C 1.40030 * 119.50647 * 129.99900 * 9 8 7 11 11 C 1.35966 * 121.19403 * 179.97438 * 10 9 8 12 12 C 1.41069 * 120.11058 * 0.28190 * 11 10 9 13 13 C 1.40407 * 120.48386 * 179.72295 * 12 11 10 14 14 H 1.07997 * 119.99849 * 150.01349 * 13 12 11 15 15 C 1.40278 * 120.00096 * 330.00773 * 13 12 11 16 16 N 1.30647 * 120.00288 * 161.91858 * 15 13 12 17 17 Si 1.86800 * 119.99881 * 341.91819 * 15 13 12 18 18 H 1.48500 * 109.46915 * 95.39863 * 17 15 13 19 19 H 1.48497 * 109.47169 * 215.39714 * 17 15 13 20 20 H 1.48505 * 109.47318 * 335.39683 * 17 15 13 21 21 C 1.46656 * 119.02893 * 359.47949 * 12 11 10 22 22 C 1.43196 * 120.56577 * 180.28624 * 21 12 11 23 23 N 9.63227 * 121.86866 * 122.91416 * 2 1 3 24 24 C 1.39063 * 118.87061 * 0.49082 * 21 12 11 25 25 C 1.39661 * 119.82753 * 0.25266 * 8 7 6 26 26 C 1.50703 * 120.04467 * 179.72471 * 25 8 7 27 27 C 1.37793 * 119.91324 * 359.53432 * 25 8 7 28 28 H 1.08998 * 109.46830 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47659 * 300.00293 * 1 2 3 30 30 H 1.08999 * 109.46763 * 60.00561 * 1 2 3 31 31 H 1.09000 * 109.46959 * 314.99472 * 3 2 1 32 32 H 1.09002 * 109.47090 * 194.99875 * 3 2 1 33 33 H 1.07992 * 119.95961 * 359.97438 * 6 5 4 34 34 H 1.07995 * 120.04393 * 179.97438 * 7 6 5 35 35 H 1.08003 * 119.40071 * 0.02562 * 10 9 8 36 36 H 1.07998 * 119.94529 * 180.02562 * 11 10 9 37 37 H 0.96991 * 120.00805 * 179.97438 * 16 15 13 38 38 H 1.08004 * 120.09455 * 179.75369 * 24 21 12 39 39 H 1.08997 * 109.47177 * 89.99955 * 26 25 8 40 40 H 1.09001 * 109.47226 * 209.99861 * 26 25 8 41 41 H 1.09006 * 109.46726 * 329.99884 * 26 25 8 42 42 H 1.08001 * 119.95628 * 180.20882 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8853 1.8825 1.3013 5 6 2.7180 1.4136 2.2662 6 6 3.6378 0.4167 1.9634 7 6 4.4838 -0.0620 2.9396 8 6 4.4167 0.4564 4.2351 9 6 5.3228 -0.0552 5.2864 10 6 6.0543 0.8490 6.0662 11 6 6.8967 0.4166 7.0420 12 6 7.0522 -0.9649 7.2816 13 6 7.9243 -1.4203 8.2834 14 1 7.7180 -2.3467 8.7986 15 6 9.0636 -0.6721 8.6148 16 7 9.6759 -0.8822 9.7496 17 14 9.7054 0.6249 7.4335 18 1 9.1659 1.9542 7.8171 19 1 11.1889 0.6571 7.4920 20 1 9.2716 0.2944 6.0522 21 6 6.2855 -1.9182 6.4728 22 6 6.4133 -3.3275 6.6923 23 7 6.5146 -4.4450 6.8673 24 6 5.4354 -1.4304 5.4862 25 6 3.4877 1.4548 4.5366 26 6 3.4069 2.0130 5.9341 27 6 2.6479 1.9314 3.5536 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.4941 1.9329 -0.7267 32 1 3.0648 1.2337 -0.2660 33 1 3.6889 0.0162 0.9618 34 1 5.1980 -0.8369 2.7036 35 1 5.9468 1.9091 5.8900 36 1 7.4508 1.1317 7.6318 37 1 10.4638 -0.3651 9.9787 38 1 4.8645 -2.1150 4.8764 39 1 4.0794 2.8661 6.0240 40 1 2.3851 2.3327 6.1391 41 1 3.6976 1.2440 6.6499 42 1 1.9316 2.7059 3.7852 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242537072.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:40 Heat of formation + Delta-G solvation = -26.018498 kcal Electronic energy + Delta-G solvation = -25733.136547 eV Core-core repulsion = 22028.796875 eV Total energy + Delta-G solvation = -3704.339672 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.26599 -38.80776 -37.61785 -36.50734 -35.18970 -34.10983 -32.37326 -31.63459 -30.23873 -29.22394 -27.94376 -26.84991 -25.55260 -24.87060 -22.85020 -21.94075 -21.17538 -20.58584 -17.98252 -17.81192 -17.61986 -17.07172 -16.70187 -15.66465 -15.42951 -15.18496 -14.70572 -14.36930 -14.11970 -14.00729 -13.74687 -13.46575 -13.19420 -13.02403 -12.92620 -12.89524 -12.73338 -12.14804 -12.02927 -11.90490 -11.77492 -11.65649 -11.47123 -11.38788 -11.21327 -10.95634 -10.77521 -10.72965 -10.40445 -10.26210 -10.12993 -9.92552 -9.46627 -8.54673 -8.23817 -7.95810 -7.39599 -7.37008 -4.86034 1.53113 1.63348 1.96812 2.46442 2.89623 3.00676 3.10885 3.17612 3.45378 3.68224 3.81767 3.87624 4.14594 4.35823 4.67886 4.84187 5.02083 5.07672 5.10693 5.17685 5.19604 5.21793 5.40837 5.43122 5.48332 5.61381 5.74090 5.76196 5.87108 6.03431 6.06685 6.17720 6.33362 6.43551 6.48279 6.52089 6.62973 6.65223 6.80139 6.92070 6.95811 7.08647 7.28154 7.40293 7.54610 7.58321 7.70190 7.91284 8.23144 8.32718 8.70980 9.59655 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018804 B = 0.003050 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.681184 B = 9179.445151 C = 9909.309900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.394 6.394 3 C 0.213 3.787 4 O -0.336 6.336 5 C 0.104 3.896 6 C -0.195 4.195 7 C -0.085 4.085 8 C -0.027 4.027 9 C -0.200 4.200 10 C -0.026 4.026 11 C -0.237 4.237 12 C 0.129 3.871 13 C -0.404 4.404 14 H 0.098 0.902 15 C 0.081 3.919 16 N -0.769 5.769 17 Si 0.917 3.083 18 H -0.262 1.262 19 H -0.285 1.285 20 H -0.235 1.235 21 C -0.172 4.172 22 C 0.296 3.704 23 N -0.497 5.497 24 C 0.006 3.994 25 C -0.054 4.054 26 C -0.114 4.114 27 C -0.147 4.147 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.296 0.704 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.244 10.037 -14.467 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.314 6.314 3 C 0.099 3.901 4 O -0.252 6.252 5 C 0.061 3.939 6 C -0.214 4.214 7 C -0.103 4.103 8 C -0.027 4.027 9 C -0.202 4.202 10 C -0.045 4.045 11 C -0.256 4.256 12 C 0.123 3.877 13 C -0.430 4.430 14 H 0.116 0.884 15 C -0.144 4.144 16 N -0.389 5.389 17 Si 0.741 3.259 18 H -0.188 1.188 19 H -0.212 1.212 20 H -0.158 1.158 21 C -0.177 4.177 22 C -0.014 4.014 23 N -0.176 5.176 24 C -0.014 4.014 25 C -0.054 4.054 26 C -0.170 4.170 27 C -0.166 4.166 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.107 0.893 38 H 0.123 0.877 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.913 8.265 -13.934 19.534 hybrid contribution 0.274 1.018 -0.524 1.178 sum -10.638 9.283 -14.459 20.209 Atomic orbital electron populations 1.22802 0.80381 1.03014 1.00397 1.88069 1.20922 1.28722 1.93680 1.24116 0.99682 0.83186 0.83077 1.86143 1.58200 1.60790 1.20092 1.18877 0.91221 0.95162 0.88662 1.21101 0.99270 1.00400 1.00596 1.21114 0.98028 0.99247 0.91906 1.18705 0.95315 0.95779 0.92916 1.17645 1.06949 0.92163 1.03416 1.20442 0.93676 0.97618 0.92784 1.20610 1.06187 0.94741 1.04074 1.18481 0.90056 0.90327 0.88873 1.19707 1.03929 1.07241 1.12154 0.88399 1.26483 0.96121 0.96819 0.95022 1.69588 1.15776 1.34344 1.19237 0.86204 0.77027 0.79638 0.83046 1.18767 1.21191 1.15781 1.16681 1.11960 0.83735 1.05360 1.25654 0.91512 0.92518 0.91718 1.81032 1.12266 1.12939 1.11337 1.20656 0.93360 0.93858 0.93574 1.19784 0.94290 0.96075 0.95281 1.20879 1.01446 1.01458 0.93214 1.20122 1.02957 1.03348 0.90167 0.89518 0.93199 0.93901 0.88230 0.88162 0.85770 0.85853 0.88080 0.87313 0.89344 0.87723 0.91317 0.92351 0.89959 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.89 101.05 1.10 1.34 16 2 O -0.39 -4.20 10.18 -59.04 -0.60 -4.80 16 3 C 0.21 1.95 6.39 101.05 0.65 2.59 16 4 O -0.34 -4.11 10.19 -42.97 -0.44 -4.55 16 5 C 0.10 1.45 6.64 -39.05 -0.26 1.19 16 6 C -0.20 -2.71 8.76 -39.48 -0.35 -3.05 16 7 C -0.08 -1.29 9.47 -39.21 -0.37 -1.66 16 8 C -0.03 -0.44 5.45 -104.85 -0.57 -1.01 16 9 C -0.20 -3.62 4.73 -104.82 -0.50 -4.12 16 10 C -0.03 -0.48 7.75 -39.73 -0.31 -0.79 16 11 C -0.24 -4.86 7.10 -39.32 -0.28 -5.14 16 12 C 0.13 2.91 5.26 -104.61 -0.55 2.36 16 13 C -0.40 -9.95 9.01 -38.00 -0.34 -10.29 16 14 H 0.10 2.64 7.64 -52.49 -0.40 2.24 16 15 C 0.08 1.89 5.41 -17.29 -0.09 1.79 16 16 N -0.77 -18.42 13.92 55.56 0.77 -17.65 16 17 Si 0.92 18.24 24.52 -169.99 -4.17 14.07 16 18 H -0.26 -4.92 6.71 56.52 0.38 -4.54 16 19 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.24 -4.78 6.86 56.52 0.39 -4.40 16 21 C -0.17 -3.73 5.93 -104.27 -0.62 -4.35 16 22 C 0.30 6.80 14.35 -22.48 -0.32 6.48 16 23 N -0.50 -11.90 18.54 41.83 0.78 -11.12 16 24 C 0.01 0.12 9.18 -38.83 -0.36 -0.23 16 25 C -0.05 -0.80 5.86 -104.25 -0.61 -1.41 16 26 C -0.11 -1.50 8.43 36.01 0.30 -1.20 16 27 C -0.15 -2.06 9.62 -39.48 -0.38 -2.44 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.43 8.03 -51.93 -0.42 0.01 16 30 H 0.04 0.25 8.11 -51.93 -0.42 -0.17 16 31 H 0.10 0.62 8.01 -51.93 -0.42 0.20 16 32 H 0.10 0.81 6.69 -51.93 -0.35 0.47 16 33 H 0.12 1.52 5.83 -52.49 -0.31 1.22 16 34 H 0.12 1.78 8.03 -52.49 -0.42 1.35 16 35 H 0.10 1.63 6.78 -52.48 -0.36 1.27 16 36 H 0.11 2.18 4.75 -52.49 -0.25 1.93 16 37 H 0.30 6.28 8.29 -40.82 -0.34 5.94 16 38 H 0.10 1.83 8.01 -52.48 -0.42 1.41 16 39 H 0.07 0.83 7.47 -51.93 -0.39 0.45 16 40 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 41 H 0.08 1.21 6.46 -51.93 -0.34 0.87 16 42 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 356.66 15.07 5.37 5.37 Total: -1.00 -26.92 356.66 -7.06 -33.97 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -4.91 Total: 4.63 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -3.86 Total: -19.93 kcal Atomic # 7 Polarization: -30.32 SS G_CDS: 1.55 Total: -28.77 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -1.04 Total: -9.35 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -4.17 Total: 14.07 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -26.92 -7.06 -33.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242537072.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.954 kcal (2) G-P(sol) polarization free energy of solvation -26.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds