Wall clock time and date at job start Tue Mar 31 2020 13:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00005 * 2 1 4 4 O 1.42891 * 109.47371 * 75.00113 * 3 2 1 5 5 C 1.35856 * 117.00392 * 74.99868 * 4 3 2 6 6 C 1.38874 * 119.92751 * 359.97438 * 5 4 3 7 7 C 1.37856 * 120.07081 * 180.02562 * 6 5 4 8 8 C 1.39460 * 119.92517 * 359.97438 * 7 6 5 9 9 C 1.48271 * 120.06441 * 180.02562 * 8 7 6 10 10 C 1.39841 * 119.53524 * 130.00022 * 9 8 7 11 11 C 1.37696 * 121.16700 * 179.97438 * 10 9 8 12 12 C 1.39591 * 120.18852 * 0.03195 * 11 10 9 13 13 C 1.43205 * 120.45549 * 180.02562 * 12 11 10 14 14 N 9.62281 * 137.79105 * 280.76351 * 5 1 2 15 15 C 1.46544 * 119.09397 * 0.26641 * 12 11 10 16 16 C 1.40843 * 120.55434 * 179.70788 * 15 12 11 17 17 H 1.07995 * 120.00197 * 24.35674 * 16 15 12 18 18 C 1.40234 * 119.99786 * 204.36661 * 16 15 12 19 19 N 1.30659 * 120.00415 * 17.25947 * 18 16 15 20 20 Si 1.86805 * 119.99845 * 197.26317 * 18 16 15 21 21 H 1.48501 * 109.47223 * 59.99554 * 20 18 16 22 22 H 1.48499 * 109.46957 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46945 * 299.99624 * 20 18 16 24 24 C 1.38630 * 119.54033 * 309.97915 * 9 8 7 25 25 C 1.39408 * 119.86392 * 0.27628 * 8 7 6 26 26 C 1.50706 * 120.03502 * 179.72391 * 25 8 7 27 27 C 1.37896 * 119.92985 * 359.49198 * 25 8 7 28 28 H 1.08997 * 109.47192 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46808 * 300.00194 * 1 2 3 30 30 H 1.09001 * 109.46886 * 59.99716 * 1 2 3 31 31 H 1.09004 * 109.46981 * 314.99199 * 3 2 1 32 32 H 1.09001 * 109.46874 * 194.99893 * 3 2 1 33 33 H 1.08000 * 119.96995 * 0.02562 * 6 5 4 34 34 H 1.08002 * 120.03992 * 179.97438 * 7 6 5 35 35 H 1.07999 * 119.41538 * 0.02562 * 10 9 8 36 36 H 1.08003 * 119.90406 * 180.02562 * 11 10 9 37 37 H 0.97000 * 120.00305 * 184.61462 * 19 18 16 38 38 H 1.08004 * 120.13178 * 0.02562 * 24 9 8 39 39 H 1.09004 * 109.47061 * 89.99923 * 26 25 8 40 40 H 1.09003 * 109.47167 * 210.00173 * 26 25 8 41 41 H 1.09002 * 109.47038 * 330.00216 * 26 25 8 42 42 H 1.08004 * 119.96706 * 180.20593 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 1.8855 1.8824 1.3013 5 6 2.7185 1.4133 2.2665 6 6 3.6370 0.4164 1.9645 7 6 4.4834 -0.0622 2.9418 8 6 4.4168 0.4563 4.2347 9 6 5.3260 -0.0557 5.2881 10 6 6.0572 0.8472 6.0663 11 6 6.9107 0.4087 7.0537 12 6 7.0614 -0.9579 7.2954 13 6 7.9471 -1.4203 8.3213 14 7 8.6489 -1.7886 9.1351 15 6 6.3048 -1.9131 6.4813 16 6 6.4381 -3.2989 6.6947 17 1 6.7585 -3.6687 7.6574 18 6 6.1549 -4.1985 5.6569 19 7 6.0989 -3.7749 4.4221 20 14 5.8576 -6.0025 6.0397 21 1 4.6931 -6.1295 6.9525 22 1 5.5804 -6.7369 4.7792 23 1 7.0626 -6.5752 6.6920 24 6 5.4389 -1.4229 5.4881 25 6 3.4901 1.4533 4.5360 26 6 3.4106 2.0119 5.9334 27 6 2.6495 1.9311 3.5528 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.4943 1.9329 -0.7268 32 1 3.0649 1.2336 -0.2660 33 1 3.6884 0.0156 0.9629 34 1 5.1972 -0.8377 2.7065 35 1 5.9499 1.9073 5.8901 36 1 7.4653 1.1241 7.6429 37 1 5.8375 -4.3822 3.7124 38 1 4.8682 -2.1088 4.8796 39 1 4.0835 2.8648 6.0226 40 1 2.3891 2.3320 6.1392 41 1 3.7016 1.2430 6.6492 42 1 1.9336 2.7059 3.7847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242537172.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:30 Heat of formation + Delta-G solvation = -27.721286 kcal Electronic energy + Delta-G solvation = -25939.759396 eV Core-core repulsion = 22235.345886 eV Total energy + Delta-G solvation = -3704.413510 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.20643 -38.67237 -37.41576 -36.41743 -35.03480 -34.07840 -32.23947 -31.37285 -29.89807 -28.68054 -27.58689 -26.54638 -25.66930 -25.23569 -23.01026 -21.48143 -20.97521 -20.28995 -17.90600 -17.73131 -17.19099 -17.00614 -16.62640 -15.78950 -15.37805 -15.06834 -14.70289 -14.11826 -13.87892 -13.75039 -13.52002 -13.37163 -12.97222 -12.86268 -12.83951 -12.69536 -12.58607 -11.96128 -11.85829 -11.75363 -11.57663 -11.46663 -11.39753 -11.32642 -11.06816 -10.93962 -10.81830 -10.62095 -10.47185 -10.24095 -9.90610 -9.74876 -9.43818 -8.44804 -8.10745 -7.73717 -7.28428 -7.02368 -4.70197 1.52966 1.72943 2.28886 2.68477 2.93321 2.96361 3.09260 3.23067 3.52731 3.71770 3.93839 3.99739 4.29470 4.47732 4.74200 4.91544 5.08550 5.17690 5.20691 5.25573 5.38028 5.43351 5.48637 5.49841 5.55717 5.66967 5.82261 5.98660 6.05619 6.15788 6.25921 6.39283 6.52872 6.57450 6.70003 6.72024 6.74284 6.86629 6.96755 7.03773 7.10531 7.25111 7.49061 7.60868 7.70008 7.79908 7.90043 8.22777 8.45243 8.56255 8.84861 9.77342 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012186 B = 0.003760 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.249772 B = 7444.040060 C = 9296.264485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.393 6.393 3 C 0.212 3.788 4 O -0.336 6.336 5 C 0.113 3.887 6 C -0.200 4.200 7 C -0.064 4.064 8 C -0.056 4.056 9 C -0.013 4.013 10 C -0.232 4.232 11 C -0.031 4.031 12 C -0.189 4.189 13 C 0.300 3.700 14 N -0.513 5.513 15 C 0.151 3.849 16 C -0.431 4.431 17 H 0.084 0.916 18 C 0.078 3.922 19 N -0.764 5.764 20 Si 0.912 3.088 21 H -0.259 1.259 22 H -0.273 1.273 23 H -0.261 1.261 24 C -0.144 4.144 25 C -0.043 4.043 26 C -0.112 4.112 27 C -0.155 4.155 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.291 0.709 38 H 0.128 0.872 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.082 0.918 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.274 8.103 -10.879 17.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.313 6.313 3 C 0.099 3.901 4 O -0.252 6.252 5 C 0.070 3.930 6 C -0.219 4.219 7 C -0.082 4.082 8 C -0.056 4.056 9 C -0.014 4.014 10 C -0.251 4.251 11 C -0.051 4.051 12 C -0.195 4.195 13 C -0.009 4.009 14 N -0.192 5.192 15 C 0.146 3.854 16 C -0.459 4.459 17 H 0.102 0.898 18 C -0.144 4.144 19 N -0.387 5.387 20 Si 0.735 3.265 21 H -0.183 1.183 22 H -0.198 1.198 23 H -0.185 1.185 24 C -0.163 4.163 25 C -0.043 4.043 26 C -0.169 4.169 27 C -0.174 4.174 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.146 0.854 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.192 7.412 -9.876 16.011 hybrid contribution -0.500 -0.633 -0.602 1.006 sum -10.691 6.779 -10.477 16.433 Atomic orbital electron populations 1.22803 0.80434 1.03021 1.00334 1.88084 1.20873 1.28650 1.93655 1.24124 0.99747 0.83206 0.83011 1.86149 1.58165 1.60793 1.20133 1.18873 0.90791 0.94762 0.88595 1.21132 0.99428 1.00540 1.00771 1.21196 0.97391 0.97939 0.91661 1.18943 0.96564 0.96409 0.93724 1.18428 0.95332 0.93552 0.94061 1.20143 1.05625 0.97325 1.02036 1.20367 0.96097 0.92781 0.95881 1.16978 1.05925 0.93078 1.03485 1.25836 0.91794 0.91500 0.91780 1.81013 1.14181 1.09816 1.14186 1.18338 0.86881 0.91639 0.88530 1.19732 1.36860 0.90828 0.98442 0.89759 1.26047 0.91977 1.02377 0.94046 1.69691 1.29448 1.39094 1.00459 0.86262 0.80559 0.80433 0.79244 1.18279 1.19799 1.18510 1.21376 1.00888 0.92537 1.01496 1.19736 0.94156 0.95013 0.95390 1.20889 1.01274 1.01602 0.93119 1.20100 1.03307 1.03751 0.90208 0.89508 0.93224 0.93941 0.88230 0.88101 0.85614 0.84950 0.88272 0.88324 0.89790 0.85391 0.91146 0.92464 0.89926 0.85940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.89 101.05 1.10 1.37 16 2 O -0.39 -4.56 10.18 -59.04 -0.60 -5.16 16 3 C 0.21 2.12 6.39 101.05 0.65 2.76 16 4 O -0.34 -4.37 10.19 -43.10 -0.44 -4.81 16 5 C 0.11 1.69 6.63 -39.13 -0.26 1.43 16 6 C -0.20 -3.08 8.76 -39.49 -0.35 -3.42 16 7 C -0.06 -1.11 9.46 -39.27 -0.37 -1.48 16 8 C -0.06 -1.02 5.45 -104.88 -0.57 -1.59 16 9 C -0.01 -0.26 4.71 -105.03 -0.49 -0.75 16 10 C -0.23 -4.44 7.82 -39.18 -0.31 -4.75 16 11 C -0.03 -0.61 9.74 -39.28 -0.38 -0.99 16 12 C -0.19 -4.30 5.95 -104.12 -0.62 -4.92 16 13 C 0.30 7.09 14.28 -22.47 -0.32 6.76 16 14 N -0.51 -12.45 18.54 41.84 0.78 -11.68 16 15 C 0.15 3.64 5.73 -104.68 -0.60 3.04 16 16 C -0.43 -10.55 8.58 -37.85 -0.32 -10.88 16 17 H 0.08 2.10 7.37 -52.49 -0.39 1.71 16 18 C 0.08 1.78 5.16 -17.30 -0.09 1.69 16 19 N -0.76 -17.41 10.94 55.56 0.61 -16.80 16 20 Si 0.91 17.39 29.60 -169.99 -5.03 12.36 16 21 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 22 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 23 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 24 C -0.14 -3.25 8.11 -38.55 -0.31 -3.56 16 25 C -0.04 -0.69 5.86 -104.31 -0.61 -1.30 16 26 C -0.11 -1.57 8.43 36.01 0.30 -1.27 16 27 C -0.16 -2.31 9.63 -39.49 -0.38 -2.69 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.46 8.03 -51.93 -0.42 0.05 16 30 H 0.04 0.28 8.11 -51.93 -0.42 -0.14 16 31 H 0.10 0.68 8.01 -51.93 -0.42 0.27 16 32 H 0.10 0.91 6.69 -51.93 -0.35 0.56 16 33 H 0.13 1.73 5.84 -52.49 -0.31 1.42 16 34 H 0.13 2.38 8.02 -52.49 -0.42 1.96 16 35 H 0.10 1.69 6.78 -52.49 -0.36 1.34 16 36 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 37 H 0.29 6.00 8.30 -40.82 -0.34 5.66 16 38 H 0.13 2.99 6.12 -52.48 -0.32 2.67 16 39 H 0.07 0.90 7.46 -51.93 -0.39 0.51 16 40 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 41 H 0.08 1.28 6.46 -51.93 -0.34 0.95 16 42 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 361.87 15.07 5.45 5.45 Total: -1.00 -26.90 361.87 -8.11 -35.01 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -4.94 Total: 6.17 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -3.94 Total: -20.55 kcal Atomic # 7 Polarization: -29.86 SS G_CDS: 1.38 Total: -28.48 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -1.04 Total: -9.97 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -26.90 -8.11 -35.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242537172.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.288 kcal (2) G-P(sol) polarization free energy of solvation -26.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds