Wall clock time and date at job start Tue Mar 31 2020 13:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 110.45911 * 2 1 4 4 C 1.51166 * 110.51793 * 237.24530 * 2 1 3 5 5 C 1.37433 * 132.73406 * 61.65580 * 4 2 1 6 6 C 1.39553 * 119.81153 * 180.20044 * 5 4 2 7 7 C 1.48244 * 120.21791 * 179.74759 * 6 5 4 8 8 C 1.39310 * 120.16200 * 309.69803 * 7 6 5 9 9 C 1.38010 * 119.94297 * 180.02562 * 8 7 6 10 10 C 1.38449 * 120.27400 * 0.02562 * 9 8 7 11 11 C 1.38115 * 120.32762 * 359.97438 * 10 9 8 12 12 C 1.38748 * 120.05284 * 0.02562 * 11 10 9 13 13 O 1.35668 * 120.13855 * 180.02562 * 12 11 10 14 14 C 1.34817 * 116.99714 * 354.39769 * 13 12 11 15 15 H 1.07994 * 119.99780 * 5.06636 * 14 13 12 16 16 C 1.38634 * 119.99764 * 185.06628 * 14 13 12 17 17 N 1.31572 * 120.00268 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99920 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47162 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47354 * 119.99864 * 18 16 14 21 21 H 1.48503 * 109.47028 * 239.99672 * 18 16 14 22 22 C 1.39472 * 119.56452 * 359.47233 * 6 5 4 23 23 C 1.37669 * 120.23762 * 0.27267 * 22 6 5 24 24 C 1.39038 * 106.32984 * 241.35690 * 4 2 1 25 25 N 1.39497 * 110.18755 * 359.97438 * 24 4 2 26 26 C 1.34347 * 112.28772 * 0.02562 * 25 24 4 27 27 O 1.21281 * 126.43374 * 179.97438 * 26 25 24 28 28 H 1.08996 * 109.47311 * 298.84772 * 1 2 3 29 29 H 1.08999 * 109.47122 * 58.84868 * 1 2 3 30 30 H 1.09001 * 109.46913 * 178.84410 * 1 2 3 31 31 H 1.08991 * 109.47445 * 181.15056 * 3 2 1 32 32 H 1.09005 * 109.46895 * 301.15625 * 3 2 1 33 33 H 1.09005 * 109.47136 * 61.14918 * 3 2 1 34 34 H 1.08001 * 120.09830 * 359.96908 * 5 4 2 35 35 H 1.08003 * 120.02856 * 0.02562 * 8 7 6 36 36 H 1.08007 * 119.86287 * 180.02562 * 9 8 7 37 37 H 1.08002 * 119.83502 * 180.27657 * 10 9 8 38 38 H 1.08000 * 119.97359 * 180.02562 * 11 10 9 39 39 H 0.96998 * 120.00057 * 179.97438 * 17 16 14 40 40 H 1.07992 * 119.88274 * 180.25734 * 22 6 5 41 41 H 1.08001 * 119.84648 * 179.97438 * 23 22 6 42 42 H 0.97000 * 123.85367 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0647 1.4335 0.0000 4 6 2.0598 -0.7660 -1.1906 5 6 1.9378 -0.5823 -2.5472 6 6 2.5498 -1.4768 -3.4262 7 6 2.4194 -1.2904 -4.8911 8 6 1.1638 -1.0995 -5.4634 9 6 1.0476 -0.9270 -6.8278 10 6 2.1745 -0.9432 -7.6318 11 6 3.4249 -1.1316 -7.0763 12 6 3.5574 -1.3064 -5.7063 13 8 4.7849 -1.4910 -5.1587 14 6 5.8232 -1.6105 -6.0103 15 1 5.6699 -1.4763 -7.0708 16 6 7.0877 -1.9056 -5.5245 17 7 7.2745 -2.0686 -4.2323 18 14 8.5265 -2.0705 -6.7043 19 1 8.0558 -1.8420 -8.0940 20 1 9.5653 -1.0661 -6.3616 21 1 9.1023 -3.4350 -6.5952 22 6 3.2898 -2.5440 -2.9175 23 6 3.4112 -2.7175 -1.5572 24 6 2.7958 -1.8276 -0.6765 25 7 2.7760 -1.7964 0.7180 26 6 2.0607 -0.7638 1.1945 27 8 1.8748 -0.4943 2.3622 28 1 -0.3634 0.4958 0.9001 29 1 -0.3633 0.5316 -0.8795 30 1 -0.3633 -1.0275 -0.0207 31 1 3.1543 1.4149 -0.0206 32 1 1.6936 1.9598 -0.8795 33 1 1.7271 1.9473 0.9001 34 1 1.3668 0.2498 -2.9319 35 1 0.2819 -1.0866 -4.8400 36 1 0.0734 -0.7787 -7.2701 37 1 2.0758 -0.8030 -8.6981 38 1 4.3002 -1.1428 -7.7089 39 1 8.1591 -2.2754 -3.8925 40 1 3.7690 -3.2369 -3.5932 41 1 3.9853 -3.5464 -1.1702 42 1 3.2266 -2.4465 1.2795 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243584389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:34 Heat of formation + Delta-G solvation = -8.413552 kcal Electronic energy + Delta-G solvation = -26672.756331 eV Core-core repulsion = 22969.180067 eV Total energy + Delta-G solvation = -3703.576264 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.55123 -39.31515 -38.01608 -36.48150 -35.45456 -34.56207 -32.37936 -31.25863 -29.75535 -29.10181 -27.47126 -27.41131 -25.44627 -24.84857 -22.97000 -21.73691 -21.12459 -20.49019 -19.44011 -18.03991 -17.51699 -17.26413 -16.42387 -15.66349 -15.49006 -14.81023 -14.66454 -14.61955 -14.20014 -14.04461 -13.73875 -13.49638 -13.45267 -13.20249 -13.13234 -12.71425 -12.51663 -12.43588 -12.09855 -12.00858 -11.77940 -11.62108 -11.43338 -11.35327 -10.99733 -10.86662 -10.71007 -10.51666 -10.44963 -10.31430 -9.88312 -9.42083 -8.92585 -8.50106 -8.39120 -7.64020 -7.08647 -6.52866 -4.11090 1.31623 1.75414 2.10916 2.30551 2.65998 3.07251 3.09191 3.12868 3.14139 3.89307 4.12054 4.17579 4.36227 4.55289 4.93091 5.01318 5.04416 5.13243 5.16604 5.31474 5.56609 5.57500 5.58948 5.63515 5.71195 5.73915 5.78965 5.82962 5.93531 5.99366 6.03142 6.14815 6.18776 6.35800 6.44717 6.52066 6.62596 6.78997 6.86712 6.94085 6.98672 7.08519 7.15316 7.29604 7.33021 7.42592 7.72675 7.91096 8.05370 8.92630 9.60536 10.63686 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012582 B = 0.004179 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.922130 B = 6698.559194 C = 8326.742195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.051 4.051 3 C -0.126 4.126 4 C -0.136 4.136 5 C -0.062 4.062 6 C -0.024 4.024 7 C -0.133 4.133 8 C -0.060 4.060 9 C -0.215 4.215 10 C -0.070 4.070 11 C -0.233 4.233 12 C 0.165 3.835 13 O -0.164 6.164 14 C -0.394 4.394 15 H 0.092 0.908 16 C 0.043 3.957 17 N -0.855 5.855 18 Si 0.938 3.062 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.044 4.044 23 C -0.127 4.127 24 C 0.121 3.879 25 N -0.656 5.656 26 C 0.535 3.465 27 O -0.514 6.514 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.128 0.872 39 H 0.269 0.731 40 H 0.135 0.865 41 H 0.122 0.878 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.174 1.350 2.816 10.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.055 4.055 3 C -0.183 4.183 4 C -0.139 4.139 5 C -0.080 4.080 6 C -0.025 4.025 7 C -0.134 4.134 8 C -0.078 4.078 9 C -0.234 4.234 10 C -0.088 4.088 11 C -0.253 4.253 12 C 0.110 3.890 13 O -0.067 6.067 14 C -0.470 4.470 15 H 0.110 0.890 16 C -0.162 4.162 17 N -0.489 5.489 18 Si 0.763 3.237 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.201 1.201 22 C -0.063 4.063 23 C -0.148 4.148 24 C 0.025 3.975 25 N -0.299 5.299 26 C 0.323 3.677 27 O -0.389 6.389 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.146 0.854 39 H 0.079 0.921 40 H 0.153 0.847 41 H 0.140 0.860 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -10.045 1.530 3.872 10.874 hybrid contribution 1.256 -0.501 -0.513 1.446 sum -8.790 1.029 3.359 9.466 Atomic orbital electron populations 1.21629 0.90765 1.02714 1.03004 1.20047 0.97888 0.96625 0.90890 1.21646 1.01652 0.92075 1.02946 1.19482 1.03308 0.97469 0.93648 1.20180 0.99435 0.98505 0.89896 1.18476 0.97603 0.94584 0.91799 1.17754 0.91403 1.13420 0.90830 1.20720 0.94967 0.97501 0.94622 1.20530 0.97709 1.11452 0.93684 1.20828 0.92393 0.97029 0.98551 1.21127 0.98082 1.11055 0.94993 1.19322 0.86344 0.92416 0.90942 1.83980 1.11010 1.76819 1.34853 1.21381 0.85432 1.50001 0.90220 0.89032 1.25244 0.97874 0.96295 0.96784 1.70050 1.23386 1.43603 1.11852 0.85690 0.80199 0.78334 0.79495 1.19100 1.20167 1.20142 1.21013 0.94723 0.96875 0.93643 1.20248 1.02289 0.99922 0.92346 1.18118 0.99767 0.97597 0.82020 1.43625 1.50832 1.29349 1.06096 1.20558 0.77222 0.80353 0.89597 1.90745 1.59786 1.70117 1.18249 0.91496 0.90899 0.92171 0.91935 0.90855 0.91501 0.85882 0.86844 0.87488 0.87478 0.85396 0.92067 0.84728 0.85982 0.75305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 8.64 37.15 0.32 -1.05 16 2 C -0.05 -0.68 1.01 -156.25 -0.16 -0.84 16 3 C -0.13 -1.54 8.64 37.16 0.32 -1.22 16 4 C -0.14 -2.07 4.99 -104.39 -0.52 -2.59 16 5 C -0.06 -0.98 9.52 -39.38 -0.37 -1.36 16 6 C -0.02 -0.44 5.28 -104.83 -0.55 -0.99 16 7 C -0.13 -2.58 5.49 -104.73 -0.58 -3.16 16 8 C -0.06 -0.99 9.52 -39.27 -0.37 -1.37 16 9 C -0.21 -3.44 10.03 -39.59 -0.40 -3.84 16 10 C -0.07 -1.19 10.03 -39.55 -0.40 -1.59 16 11 C -0.23 -4.74 9.16 -39.44 -0.36 -5.10 16 12 C 0.16 3.67 6.56 -38.74 -0.25 3.42 16 13 O -0.16 -4.26 8.11 0.34 0.00 -4.26 16 14 C -0.39 -10.28 9.49 30.88 0.29 -9.98 16 15 H 0.09 2.23 5.21 -52.49 -0.27 1.96 16 16 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 17 N -0.85 -23.48 13.67 55.48 0.76 -22.72 16 18 Si 0.94 19.59 29.55 -169.99 -5.02 14.57 16 19 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 20 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 22 C -0.04 -0.83 8.77 -39.33 -0.34 -1.17 16 23 C -0.13 -2.11 10.06 -39.31 -0.40 -2.50 16 24 C 0.12 1.88 7.11 -83.60 -0.59 1.28 16 25 N -0.66 -9.20 5.88 -9.65 -0.06 -9.26 16 26 C 0.54 8.03 7.36 -10.84 -0.08 7.95 16 27 O -0.51 -8.82 18.03 5.56 0.10 -8.72 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.12 1.72 8.05 -52.49 -0.42 1.30 16 35 H 0.11 1.58 8.05 -52.48 -0.42 1.15 16 36 H 0.11 1.42 8.06 -52.48 -0.42 0.99 16 37 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.13 2.61 5.64 -52.49 -0.30 2.31 16 39 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 40 H 0.13 2.76 7.69 -52.49 -0.40 2.35 16 41 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 42 H 0.41 4.80 8.96 -40.82 -0.37 4.44 16 LS Contribution 358.64 15.07 5.40 5.40 Total: -1.00 -29.74 358.64 -8.48 -38.22 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -5.12 Total: 9.87 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -4.54 Total: -23.09 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.70 Total: -31.98 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.10 Total: -12.98 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.74 -8.48 -38.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243584389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.803 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds