Wall clock time and date at job start Tue Mar 31 2020 13:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 110.45911 * 2 1 4 4 C 1.51166 * 110.51793 * 237.24530 * 2 1 3 5 5 C 1.37433 * 132.73406 * 61.65580 * 4 2 1 6 6 C 1.39553 * 119.81153 * 180.20044 * 5 4 2 7 7 C 1.48244 * 120.21791 * 179.74759 * 6 5 4 8 8 C 1.39310 * 120.16200 * 309.69803 * 7 6 5 9 9 C 1.38010 * 119.94297 * 180.02562 * 8 7 6 10 10 C 1.38449 * 120.27400 * 0.02562 * 9 8 7 11 11 C 1.38115 * 120.32762 * 359.97438 * 10 9 8 12 12 C 1.38748 * 120.05284 * 0.02562 * 11 10 9 13 13 O 1.35668 * 120.13855 * 180.02562 * 12 11 10 14 14 C 1.34817 * 116.99714 * 354.39769 * 13 12 11 15 15 H 1.07994 * 119.99780 * 5.06636 * 14 13 12 16 16 C 1.38634 * 119.99764 * 185.06628 * 14 13 12 17 17 N 1.31572 * 120.00268 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99920 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47162 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47354 * 119.99864 * 18 16 14 21 21 H 1.48503 * 109.47028 * 239.99672 * 18 16 14 22 22 C 1.39472 * 119.56452 * 359.47233 * 6 5 4 23 23 C 1.37669 * 120.23762 * 0.27267 * 22 6 5 24 24 C 1.39038 * 106.32984 * 241.35690 * 4 2 1 25 25 N 1.39497 * 110.18755 * 359.97438 * 24 4 2 26 26 C 1.34347 * 112.28772 * 0.02562 * 25 24 4 27 27 O 1.21281 * 126.43374 * 179.97438 * 26 25 24 28 28 H 1.08996 * 109.47311 * 298.84772 * 1 2 3 29 29 H 1.08999 * 109.47122 * 58.84868 * 1 2 3 30 30 H 1.09001 * 109.46913 * 178.84410 * 1 2 3 31 31 H 1.08991 * 109.47445 * 181.15056 * 3 2 1 32 32 H 1.09005 * 109.46895 * 301.15625 * 3 2 1 33 33 H 1.09005 * 109.47136 * 61.14918 * 3 2 1 34 34 H 1.08001 * 120.09830 * 359.96908 * 5 4 2 35 35 H 1.08003 * 120.02856 * 0.02562 * 8 7 6 36 36 H 1.08007 * 119.86287 * 180.02562 * 9 8 7 37 37 H 1.08002 * 119.83502 * 180.27657 * 10 9 8 38 38 H 1.08000 * 119.97359 * 180.02562 * 11 10 9 39 39 H 0.96998 * 120.00057 * 179.97438 * 17 16 14 40 40 H 1.07992 * 119.88274 * 180.25734 * 22 6 5 41 41 H 1.08001 * 119.84648 * 179.97438 * 23 22 6 42 42 H 0.97000 * 123.85367 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0647 1.4335 0.0000 4 6 2.0598 -0.7660 -1.1906 5 6 1.9378 -0.5823 -2.5472 6 6 2.5498 -1.4768 -3.4262 7 6 2.4194 -1.2904 -4.8911 8 6 1.1638 -1.0995 -5.4634 9 6 1.0476 -0.9270 -6.8278 10 6 2.1745 -0.9432 -7.6318 11 6 3.4249 -1.1316 -7.0763 12 6 3.5574 -1.3064 -5.7063 13 8 4.7849 -1.4910 -5.1587 14 6 5.8232 -1.6105 -6.0103 15 1 5.6699 -1.4763 -7.0708 16 6 7.0877 -1.9056 -5.5245 17 7 7.2745 -2.0686 -4.2323 18 14 8.5265 -2.0705 -6.7043 19 1 8.0558 -1.8420 -8.0940 20 1 9.5653 -1.0661 -6.3616 21 1 9.1023 -3.4350 -6.5952 22 6 3.2898 -2.5440 -2.9175 23 6 3.4112 -2.7175 -1.5572 24 6 2.7958 -1.8276 -0.6765 25 7 2.7760 -1.7964 0.7180 26 6 2.0607 -0.7638 1.1945 27 8 1.8748 -0.4943 2.3622 28 1 -0.3634 0.4958 0.9001 29 1 -0.3633 0.5316 -0.8795 30 1 -0.3633 -1.0275 -0.0207 31 1 3.1543 1.4149 -0.0206 32 1 1.6936 1.9598 -0.8795 33 1 1.7271 1.9473 0.9001 34 1 1.3668 0.2498 -2.9319 35 1 0.2819 -1.0866 -4.8400 36 1 0.0734 -0.7787 -7.2701 37 1 2.0758 -0.8030 -8.6981 38 1 4.3002 -1.1428 -7.7089 39 1 8.1591 -2.2754 -3.8925 40 1 3.7690 -3.2369 -3.5932 41 1 3.9853 -3.5464 -1.1702 42 1 3.2266 -2.4465 1.2795 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243584389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:34 Heat of formation + Delta-G solvation = -24.654804 kcal Electronic energy + Delta-G solvation = -26673.460604 eV Core-core repulsion = 22969.180067 eV Total energy + Delta-G solvation = -3704.280538 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.76275 -40.84415 -39.37007 -38.04165 -36.75995 -35.65833 -34.23569 -32.65611 -31.02720 -30.58678 -28.86139 -28.31607 -27.27598 -26.00623 -24.33127 -23.21060 -22.52519 -21.85626 -20.58779 -19.74793 -18.83643 -18.72866 -17.79959 -17.06534 -16.67138 -16.34245 -16.19708 -15.93098 -15.61152 -15.42918 -15.09496 -14.98644 -14.73099 -14.60315 -14.38055 -14.16904 -13.65729 -13.59635 -13.50301 -13.24102 -13.05115 -12.98723 -12.82121 -12.53735 -12.33488 -12.32145 -12.15320 -12.09932 -11.72953 -11.58817 -11.17838 -11.00509 -10.76909 -9.83019 -9.76393 -9.09696 -8.55683 -8.41572 -6.07118 -0.02814 0.44067 0.70751 0.83697 1.36781 1.40942 1.43672 1.52638 1.95071 2.18741 2.76562 2.92141 3.01751 3.19216 3.31933 3.55572 3.82892 3.94565 3.99095 4.04023 4.25032 4.33300 4.34404 4.47032 4.57173 4.69294 4.72078 4.73842 4.76653 4.82793 4.84933 5.05888 5.08963 5.10685 5.17130 5.20172 5.23438 5.24810 5.44844 5.53355 5.62000 5.73475 5.75421 5.82607 5.86464 6.02931 6.11259 6.30180 6.88111 7.03572 7.84813 8.79319 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012582 B = 0.004179 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.922130 B = 6698.559194 C = 8326.742195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.048 4.048 3 C -0.126 4.126 4 C -0.131 4.131 5 C -0.053 4.053 6 C -0.044 4.044 7 C -0.137 4.137 8 C -0.058 4.058 9 C -0.191 4.191 10 C -0.071 4.071 11 C -0.250 4.250 12 C 0.125 3.875 13 O -0.209 6.209 14 C -0.411 4.411 15 H 0.097 0.903 16 C -0.014 4.014 17 N -0.908 5.908 18 Si 1.008 2.992 19 H -0.254 1.254 20 H -0.273 1.273 21 H -0.271 1.271 22 C -0.066 4.066 23 C -0.132 4.132 24 C 0.120 3.880 25 N -0.650 5.650 26 C 0.532 3.468 27 O -0.536 6.536 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.141 0.859 38 H 0.116 0.884 39 H 0.269 0.731 40 H 0.102 0.898 41 H 0.132 0.868 42 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.208 2.736 1.860 13.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.051 4.051 3 C -0.183 4.183 4 C -0.133 4.133 5 C -0.071 4.071 6 C -0.045 4.045 7 C -0.138 4.138 8 C -0.076 4.076 9 C -0.210 4.210 10 C -0.089 4.089 11 C -0.270 4.270 12 C 0.074 3.926 13 O -0.114 6.114 14 C -0.487 4.487 15 H 0.115 0.885 16 C -0.213 4.213 17 N -0.546 5.546 18 Si 0.828 3.172 19 H -0.177 1.177 20 H -0.198 1.198 21 H -0.197 1.197 22 C -0.085 4.085 23 C -0.153 4.153 24 C 0.024 3.976 25 N -0.293 5.293 26 C 0.321 3.679 27 O -0.413 6.413 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.168 0.832 35 H 0.168 0.832 36 H 0.169 0.831 37 H 0.159 0.841 38 H 0.134 0.866 39 H 0.078 0.922 40 H 0.120 0.880 41 H 0.150 0.850 42 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -13.130 2.914 2.888 13.756 hybrid contribution 1.876 -0.908 -0.229 2.097 sum -11.254 2.006 2.659 11.737 Atomic orbital electron populations 1.21671 0.88428 1.03156 1.04554 1.20151 0.99631 0.96615 0.88696 1.21689 1.00577 0.91488 1.04535 1.19733 1.02404 0.97155 0.94040 1.20316 0.98839 0.98287 0.89706 1.18585 0.98638 0.95263 0.91979 1.18143 0.91753 1.12539 0.91364 1.21182 0.94747 0.96024 0.95603 1.21106 0.99103 1.07491 0.93262 1.21224 0.91274 0.95831 1.00553 1.21254 0.99455 1.11986 0.94280 1.19918 0.86286 0.93905 0.92496 1.83966 1.12140 1.79814 1.35498 1.21775 0.86245 1.49971 0.90752 0.88531 1.26332 1.00439 0.96030 0.98481 1.70190 1.23883 1.46593 1.13930 0.84668 0.76441 0.78312 0.77733 1.17712 1.19820 1.19658 1.20843 0.95921 0.97511 0.94178 1.20278 1.02551 1.00699 0.91785 1.18139 0.99405 0.97455 0.82589 1.43614 1.50597 1.29550 1.05556 1.20881 0.76915 0.80378 0.89776 1.90736 1.60673 1.70679 1.19213 0.90655 0.88654 0.92352 0.93678 0.88886 0.90333 0.83185 0.83205 0.83104 0.84144 0.86637 0.92206 0.87959 0.85000 0.74248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 8.64 71.98 0.62 -1.63 16 2 C -0.05 -1.16 1.01 -53.31 -0.05 -1.22 16 3 C -0.13 -2.78 8.64 71.98 0.62 -2.15 16 4 C -0.13 -3.75 4.99 -19.71 -0.10 -3.85 16 5 C -0.05 -1.60 9.52 22.40 0.21 -1.39 16 6 C -0.04 -1.62 5.28 -20.00 -0.11 -1.73 16 7 C -0.14 -5.28 5.49 -19.93 -0.11 -5.39 16 8 C -0.06 -1.72 9.52 22.47 0.21 -1.50 16 9 C -0.19 -5.24 10.03 22.27 0.22 -5.01 16 10 C -0.07 -2.23 10.03 22.29 0.22 -2.00 16 11 C -0.25 -10.26 9.16 22.36 0.20 -10.06 16 12 C 0.13 5.79 6.56 22.82 0.15 5.94 16 13 O -0.21 -11.58 8.11 -21.70 -0.18 -11.76 16 14 C -0.41 -22.75 9.49 67.91 0.64 -22.10 16 15 H 0.10 4.98 5.21 -2.91 -0.02 4.96 16 16 C -0.01 -0.77 5.49 84.83 0.47 -0.31 16 17 N -0.91 -53.22 13.67 21.61 0.30 -52.93 16 18 Si 1.01 41.80 29.55 68.60 2.03 43.83 16 19 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 21 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 22 C -0.07 -2.62 8.77 22.43 0.20 -2.43 16 23 C -0.13 -4.57 10.06 22.44 0.23 -4.34 16 24 C 0.12 3.72 7.11 38.42 0.27 3.99 16 25 N -0.65 -17.83 5.88 -303.06 -1.78 -19.61 16 26 C 0.53 15.25 7.36 87.94 0.65 15.90 16 27 O -0.54 -17.77 18.03 -3.03 -0.05 -17.82 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.15 3.63 8.05 -2.91 -0.02 3.61 16 35 H 0.15 3.38 8.05 -2.91 -0.02 3.35 16 36 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 37 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 38 H 0.12 4.89 5.64 -2.91 -0.02 4.88 16 39 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 40 H 0.10 4.67 7.69 -2.91 -0.02 4.65 16 41 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 42 H 0.42 9.69 8.96 -92.71 -0.83 8.86 16 Total: -1.00 -69.61 358.64 5.10 -64.51 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: 0.23 Total: 33.08 kcal Atomic # 6 Polarization: -43.86 SS G_CDS: 4.56 Total: -39.30 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -1.49 Total: -72.54 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.23 Total: -29.58 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -69.61 5.10 -64.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243584389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.851 kcal (2) G-P(sol) polarization free energy of solvation -69.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds