Wall clock time and date at job start Tue Mar 31 2020 13:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 110.45164 * 2 1 4 4 C 1.51183 * 110.50558 * 122.59324 * 2 1 3 5 5 C 1.37820 * 132.68740 * 298.64957 * 4 2 1 6 6 C 1.38131 * 120.08290 * 180.02562 * 5 4 2 7 7 C 1.39451 * 119.70670 * 359.97438 * 6 5 4 8 8 C 1.48296 * 119.95356 * 179.97438 * 7 6 5 9 9 C 1.39284 * 120.15862 * 130.00104 * 8 7 6 10 10 C 1.38018 * 119.94329 * 180.02562 * 9 8 7 11 11 C 1.38444 * 120.26976 * 0.02562 * 10 9 8 12 12 C 1.38106 * 120.32435 * 359.97438 * 11 10 9 13 13 C 1.38762 * 120.05101 * 0.02562 * 12 11 10 14 14 O 1.35663 * 120.13445 * 179.97438 * 13 12 11 15 15 C 1.34817 * 116.99920 * 354.40388 * 14 13 12 16 16 H 1.07998 * 120.00099 * 5.06475 * 15 14 13 17 17 C 1.38652 * 119.99739 * 185.06546 * 15 14 13 18 18 N 1.31553 * 120.00075 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 120.00106 * 359.97438 * 17 15 14 20 20 H 1.48495 * 109.47042 * 89.99996 * 19 17 15 21 21 H 1.48495 * 109.47180 * 210.00295 * 19 17 15 22 22 H 1.48500 * 109.47191 * 330.00265 * 19 17 15 23 23 C 1.39095 * 120.09760 * 0.25626 * 7 6 5 24 24 C 1.39008 * 106.30596 * 118.65327 * 4 2 1 25 25 N 1.39575 * 110.21798 * 359.97438 * 24 4 2 26 26 C 1.34356 * 112.24813 * 0.02562 * 25 24 4 27 27 O 1.21289 * 126.43246 * 179.97438 * 26 25 24 28 28 H 1.08995 * 109.47368 * 297.40919 * 1 2 3 29 29 H 1.09006 * 109.46964 * 57.40638 * 1 2 3 30 30 H 1.08992 * 109.47251 * 177.40592 * 1 2 3 31 31 H 1.09000 * 109.46952 * 182.59246 * 3 2 1 32 32 H 1.08996 * 109.47005 * 302.59141 * 3 2 1 33 33 H 1.08991 * 109.47022 * 62.59645 * 3 2 1 34 34 H 1.08003 * 119.95521 * 0.02562 * 5 4 2 35 35 H 1.07998 * 120.14811 * 180.02562 * 6 5 4 36 36 H 1.07998 * 120.03072 * 0.02562 * 9 8 7 37 37 H 1.07994 * 119.86270 * 180.02562 * 10 9 8 38 38 H 1.07998 * 119.83477 * 180.02562 * 11 10 9 39 39 H 1.08000 * 119.97469 * 179.72697 * 12 11 10 40 40 H 0.97002 * 120.00098 * 180.02562 * 18 17 15 41 41 H 1.07999 * 119.99068 * 179.72349 * 23 7 6 42 42 H 0.96996 * 123.87984 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0646 1.4336 0.0000 4 6 2.0596 -0.7628 1.1930 5 6 1.9320 -0.5769 2.5527 6 6 2.5400 -1.4523 3.4313 7 6 3.2822 -2.5241 2.9362 8 6 3.9377 -3.4669 3.8746 9 6 3.7672 -4.8405 3.7193 10 6 4.3790 -5.7140 4.5955 11 6 5.1620 -5.2307 5.6299 12 6 5.3386 -3.8709 5.7941 13 6 4.7298 -2.9807 4.9210 14 8 4.9016 -1.6445 5.0811 15 6 5.5794 -1.2413 6.1745 16 1 6.0277 -1.9716 6.8318 17 6 5.7007 0.1111 6.4553 18 7 6.3624 0.5047 7.5220 19 14 4.9257 1.3744 5.3181 20 1 3.5391 1.6594 5.7666 21 1 5.7239 2.6261 5.3514 22 1 4.8980 0.8418 3.9322 23 6 3.4134 -2.7067 1.5636 24 6 2.7955 -1.8254 0.6815 25 7 2.7752 -1.7988 -0.7138 26 6 2.0600 -0.7671 -1.1926 27 8 1.8741 -0.5002 -2.3611 28 1 -0.3634 0.4730 0.9122 29 1 -0.3633 0.5536 -0.8659 30 1 -0.3633 -1.0265 -0.0465 31 1 3.1535 1.4153 -0.0465 32 1 1.6729 1.9674 -0.8658 33 1 1.7484 1.9393 0.9123 34 1 1.3558 0.2544 2.9316 35 1 2.4403 -1.3078 4.4969 36 1 3.1569 -5.2218 2.9141 37 1 4.2462 -6.7788 4.4737 38 1 5.6378 -5.9205 6.3112 39 1 5.9470 -3.4999 6.6057 40 1 6.4470 1.4508 7.7186 41 1 3.9923 -3.5348 1.1821 42 1 3.2257 -2.4503 -1.2736 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243586180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:37 Heat of formation + Delta-G solvation = -22.285550 kcal Electronic energy + Delta-G solvation = -26785.643962 eV Core-core repulsion = 23081.466163 eV Total energy + Delta-G solvation = -3704.177799 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.79409 -41.02360 -39.43768 -38.20752 -36.81581 -35.69140 -34.43995 -32.83231 -30.89497 -30.76728 -29.15373 -28.35780 -27.22246 -26.04924 -23.90799 -23.73195 -22.69870 -21.71742 -20.64828 -19.76064 -19.18787 -18.54470 -17.89012 -17.15080 -16.70459 -16.57671 -16.12889 -15.83582 -15.69037 -15.57689 -15.36201 -15.11501 -14.77058 -14.62214 -14.33871 -14.19889 -14.04168 -13.72001 -13.66753 -13.35281 -13.14588 -13.03693 -12.61861 -12.51879 -12.49186 -12.36254 -12.33763 -12.02540 -11.78526 -11.66631 -11.28778 -11.06106 -10.89270 -10.15394 -9.48416 -9.13655 -8.81668 -8.48617 -6.19267 -0.05516 0.24686 0.67201 0.76937 1.32196 1.34630 1.38121 1.53758 1.91092 2.28817 2.69256 2.83324 2.97378 3.09130 3.17840 3.22386 3.75323 3.80609 3.99908 4.00103 4.18572 4.27401 4.36082 4.37620 4.52984 4.59427 4.67745 4.68756 4.73087 4.78131 4.78566 4.88568 4.96961 5.06227 5.13101 5.19699 5.20207 5.38152 5.43721 5.45564 5.59594 5.66815 5.72986 5.76312 5.82899 5.91742 6.01970 6.25493 6.86735 6.87313 7.61169 8.62716 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011744 B = 0.004869 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.639644 B = 5749.813421 C = 7632.640829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.052 4.052 3 C -0.127 4.127 4 C -0.139 4.139 5 C -0.065 4.065 6 C -0.127 4.127 7 C 0.004 3.996 8 C -0.134 4.134 9 C -0.057 4.057 10 C -0.182 4.182 11 C -0.071 4.071 12 C -0.243 4.243 13 C 0.138 3.862 14 O -0.226 6.226 15 C -0.395 4.395 16 H 0.081 0.919 17 C 0.016 3.984 18 N -0.923 5.923 19 Si 0.954 3.046 20 H -0.257 1.257 21 H -0.277 1.277 22 H -0.257 1.257 23 C -0.124 4.124 24 C 0.131 3.869 25 N -0.648 5.648 26 C 0.534 3.466 27 O -0.534 6.534 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.147 0.853 35 H 0.113 0.887 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.139 0.861 39 H 0.109 0.891 40 H 0.283 0.717 41 H 0.145 0.855 42 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.897 -5.846 -12.989 17.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.055 4.055 3 C -0.185 4.185 4 C -0.142 4.142 5 C -0.083 4.083 6 C -0.146 4.146 7 C 0.003 3.997 8 C -0.135 4.135 9 C -0.074 4.074 10 C -0.201 4.201 11 C -0.089 4.089 12 C -0.262 4.262 13 C 0.088 3.912 14 O -0.132 6.132 15 C -0.471 4.471 16 H 0.099 0.901 17 C -0.183 4.183 18 N -0.564 5.564 19 Si 0.776 3.224 20 H -0.181 1.181 21 H -0.203 1.203 22 H -0.181 1.181 23 C -0.145 4.145 24 C 0.035 3.965 25 N -0.292 5.292 26 C 0.323 3.677 27 O -0.411 6.411 28 H 0.108 0.892 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.164 0.836 35 H 0.131 0.869 36 H 0.171 0.829 37 H 0.171 0.829 38 H 0.157 0.843 39 H 0.127 0.873 40 H 0.093 0.907 41 H 0.163 0.837 42 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -11.057 -5.246 -13.658 18.339 hybrid contribution 0.871 0.223 0.295 0.947 sum -10.185 -5.024 -13.363 17.537 Atomic orbital electron populations 1.21663 0.88732 1.03052 1.04424 1.20178 0.99498 0.96708 0.89139 1.21698 1.00702 0.91615 1.04465 1.19882 1.02695 0.97557 0.94030 1.20285 0.98708 0.98934 0.90356 1.21222 0.98434 0.95184 0.99766 1.18349 0.95123 0.94420 0.91806 1.18133 1.03765 0.94069 0.97565 1.21200 0.97581 0.89761 0.98898 1.21153 1.01348 1.00746 0.96825 1.21243 0.96573 0.93447 0.97636 1.21292 1.06939 0.94895 1.03051 1.19557 0.94004 0.83431 0.94207 1.83549 1.67929 1.19286 1.42455 1.20695 1.31577 0.93708 1.01120 0.90121 1.25156 0.96881 0.98559 0.97655 1.69725 1.41874 1.17845 1.26910 0.85440 0.79265 0.77549 0.80142 1.18100 1.20253 1.18051 1.20421 1.02744 1.00886 0.90454 1.17986 0.98818 0.97073 0.82663 1.43577 1.50660 1.29522 1.05417 1.20784 0.76910 0.80447 0.89585 1.90752 1.60486 1.70730 1.19140 0.89176 0.90614 0.92298 0.93347 0.90246 0.89371 0.83564 0.86879 0.82939 0.82868 0.84280 0.87277 0.90735 0.83684 0.73879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.13 8.63 71.98 0.62 -1.51 16 2 C -0.05 -1.16 1.01 -53.30 -0.05 -1.21 16 3 C -0.13 -2.61 8.64 71.98 0.62 -1.99 16 4 C -0.14 -3.57 5.00 -19.63 -0.10 -3.66 16 5 C -0.06 -1.78 10.02 22.15 0.22 -1.56 16 6 C -0.13 -4.26 8.79 22.54 0.20 -4.06 16 7 C 0.00 0.12 5.27 -20.10 -0.11 0.02 16 8 C -0.13 -4.75 5.48 -19.93 -0.11 -4.86 16 9 C -0.06 -1.57 9.50 22.47 0.21 -1.35 16 10 C -0.18 -4.79 10.03 22.27 0.22 -4.56 16 11 C -0.07 -2.23 10.03 22.29 0.22 -2.01 16 12 C -0.24 -10.01 9.16 22.36 0.20 -9.80 16 13 C 0.14 6.03 6.55 22.81 0.15 6.18 16 14 O -0.23 -11.42 6.93 -21.64 -0.15 -11.57 16 15 C -0.39 -22.21 9.95 67.92 0.68 -21.54 16 16 H 0.08 4.79 5.44 -2.91 -0.02 4.77 16 17 C 0.02 0.90 5.49 84.83 0.47 1.37 16 18 N -0.92 -53.97 13.96 21.61 0.30 -53.66 16 19 Si 0.95 43.70 28.62 68.60 1.96 45.67 16 20 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 23 C -0.12 -3.37 9.53 22.70 0.22 -3.16 16 24 C 0.13 3.36 7.10 38.32 0.27 3.63 16 25 N -0.65 -14.73 5.88 -303.28 -1.78 -16.51 16 26 C 0.53 13.62 7.37 87.94 0.65 14.27 16 27 O -0.53 -16.28 18.03 -3.06 -0.06 -16.33 16 28 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.23 8.14 -2.38 -0.02 1.22 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 35 H 0.11 4.20 7.68 -2.91 -0.02 4.17 16 36 H 0.15 3.13 8.04 -2.91 -0.02 3.10 16 37 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 38 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 39 H 0.11 5.00 5.64 -2.91 -0.02 4.99 16 40 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 41 H 0.15 3.24 8.03 -2.91 -0.02 3.22 16 42 H 0.42 7.53 8.96 -92.71 -0.83 6.70 16 Total: -1.00 -67.54 357.41 5.10 -62.45 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.23 Total: 25.76 kcal Atomic # 6 Polarization: -40.39 SS G_CDS: 4.59 Total: -35.80 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: -1.48 Total: -70.18 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.21 Total: -27.90 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.96 Total: 45.67 kcal Total: -67.54 5.10 -62.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.162 kcal (2) G-P(sol) polarization free energy of solvation -67.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds