Wall clock time and date at job start Tue Mar 31 2020 13:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 110.12646 * 2 1 4 4 N 1.46718 * 110.09578 * 238.42154 * 2 1 3 5 5 C 1.34413 * 108.77739 * 240.80152 * 4 2 1 6 6 O 1.21551 * 124.85613 * 180.02562 * 5 4 2 7 7 C 1.47588 * 110.28772 * 359.97438 * 5 4 2 8 8 C 1.39428 * 132.22799 * 180.02562 * 7 5 4 9 9 C 1.39119 * 119.72568 * 180.02562 * 8 7 5 10 10 C 1.48303 * 119.97973 * 179.97438 * 9 8 7 11 11 C 1.39280 * 120.15523 * 310.02166 * 10 9 8 12 12 C 1.38020 * 119.94231 * 179.97438 * 11 10 9 13 13 C 1.38444 * 120.27026 * 0.02562 * 12 11 10 14 14 C 1.38105 * 120.32402 * 0.02562 * 13 12 11 15 15 C 1.38761 * 120.04538 * 359.97438 * 14 13 12 16 16 O 1.35668 * 120.13104 * 180.02562 * 15 14 13 17 17 C 1.34815 * 116.99926 * 354.40137 * 16 15 14 18 18 H 1.07997 * 120.00308 * 5.06699 * 17 16 15 19 19 C 1.38656 * 119.99756 * 185.05875 * 17 16 15 20 20 N 1.31553 * 119.99994 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99863 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46972 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47091 * 120.00499 * 21 19 17 24 24 H 1.48502 * 109.47276 * 240.00617 * 21 19 17 25 25 C 1.39515 * 120.04330 * 0.24722 * 9 8 7 26 26 C 1.38218 * 120.06309 * 359.49776 * 25 9 8 27 27 C 1.37712 * 120.12823 * 0.50478 * 26 25 9 28 28 H 1.09007 * 109.46904 * 298.41698 * 1 2 3 29 29 H 1.08996 * 109.47057 * 58.41429 * 1 2 3 30 30 H 1.08994 * 109.46973 * 178.42145 * 1 2 3 31 31 H 1.08998 * 109.47149 * 181.58010 * 3 2 1 32 32 H 1.08998 * 109.46961 * 301.58157 * 3 2 1 33 33 H 1.09002 * 109.46616 * 61.58289 * 3 2 1 34 34 H 0.96996 * 125.61196 * 60.81719 * 4 2 1 35 35 H 1.07998 * 120.13904 * 359.97438 * 8 7 5 36 36 H 1.07998 * 120.03201 * 359.95069 * 11 10 9 37 37 H 1.08007 * 119.85956 * 180.02562 * 12 11 10 38 38 H 1.08007 * 119.83393 * 180.27653 * 13 12 11 39 39 H 1.07999 * 119.97345 * 180.02562 * 14 13 12 40 40 H 0.97000 * 119.99925 * 179.97438 * 20 19 17 41 41 H 1.07991 * 119.96624 * 179.74733 * 25 9 8 42 42 H 1.07994 * 119.93529 * 180.25448 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0565 1.4366 0.0000 4 7 2.0341 -0.7215 -1.1738 5 6 2.7658 -1.7690 -0.7565 6 8 3.3217 -2.5639 -1.4890 7 6 2.7987 -1.8152 0.7183 8 6 3.4106 -2.6901 1.6150 9 6 3.2680 -2.4862 2.9838 10 6 3.9160 -3.4136 3.9426 11 6 3.7526 -4.7898 3.8041 12 6 4.3581 -5.6490 4.6986 13 6 5.1278 -5.1486 5.7349 14 6 5.2964 -3.7860 5.8833 15 6 4.6937 -2.9102 4.9915 16 8 4.8586 -1.5712 5.1354 17 6 5.5227 -1.1505 6.2306 18 1 5.9667 -1.8700 6.9025 19 6 5.6358 0.2060 6.4942 20 7 5.0946 1.0825 5.6759 21 14 6.5565 0.7890 8.0114 22 1 7.0676 -0.3859 8.7621 23 1 7.6966 1.6468 7.5994 24 1 5.6378 1.5696 8.8785 25 6 2.5111 -1.4131 3.4550 26 6 1.9103 -0.5449 2.5630 27 6 2.0482 -0.7422 1.2071 28 1 -0.3633 0.4891 0.9039 29 1 -0.3633 0.5382 -0.8754 30 1 -0.3633 -1.0272 -0.0283 31 1 3.1460 1.4243 -0.0283 32 1 1.6761 1.9629 -0.8755 33 1 1.7222 1.9460 0.9039 34 1 1.8671 -0.4820 -2.0988 35 1 3.9922 -3.5230 1.2486 36 1 3.1523 -5.1844 2.9976 37 1 4.2308 -6.7160 4.5897 38 1 5.6021 -5.8275 6.4282 39 1 5.8984 -3.4018 6.6934 40 1 5.1734 2.0315 5.8606 41 1 2.3979 -1.2584 4.5178 42 1 1.3283 0.2874 2.9301 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243586957.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:28 Heat of formation + Delta-G solvation = -3.447496 kcal Electronic energy + Delta-G solvation = -26655.903057 eV Core-core repulsion = 22952.542137 eV Total energy + Delta-G solvation = -3703.360920 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.15895 -39.28578 -37.63563 -36.74586 -36.18246 -32.41625 -32.01906 -31.62358 -30.27123 -29.14406 -28.13218 -27.46780 -25.44032 -23.73221 -23.39696 -21.59258 -21.47179 -20.14719 -19.64803 -18.03531 -17.25809 -16.87102 -16.23798 -15.72572 -15.23806 -14.77936 -14.70820 -14.41874 -14.27189 -14.13888 -13.72680 -13.54409 -13.49174 -13.27021 -13.19400 -12.72946 -12.51709 -12.26732 -12.15441 -11.94531 -11.76731 -11.55643 -11.41699 -11.24098 -10.99651 -10.93709 -10.77988 -10.48882 -10.47075 -9.74593 -9.43106 -9.29023 -8.94095 -8.72919 -8.55349 -7.88974 -7.20662 -6.53454 -4.11473 1.12702 1.53117 2.17955 2.31557 3.07273 3.09065 3.11448 3.14122 3.21021 3.89200 4.15067 4.25844 4.42002 4.56794 4.79103 4.96747 5.01723 5.13309 5.22362 5.28422 5.42971 5.51101 5.59419 5.62463 5.64014 5.74063 5.76983 5.85646 5.95462 5.98914 6.07598 6.12816 6.24791 6.33589 6.41996 6.58494 6.64284 6.83010 6.89876 6.92295 7.03088 7.06646 7.12028 7.28251 7.30079 7.36801 7.72332 7.90682 8.33999 8.92119 9.59571 10.63201 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011488 B = 0.004446 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.661946 B = 6296.543393 C = 8116.648183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.197 3.803 3 C -0.150 4.150 4 N -0.720 5.720 5 C 0.568 3.432 6 O -0.536 6.536 7 C -0.169 4.169 8 C -0.043 4.043 9 C -0.014 4.014 10 C -0.139 4.139 11 C -0.058 4.058 12 C -0.214 4.214 13 C -0.068 4.068 14 C -0.233 4.233 15 C 0.166 3.834 16 O -0.165 6.165 17 C -0.394 4.394 18 H 0.093 0.907 19 C 0.043 3.957 20 N -0.855 5.855 21 Si 0.939 3.061 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.043 4.043 26 C -0.094 4.094 27 C -0.086 4.086 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.418 0.582 35 H 0.127 0.873 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.129 0.871 40 H 0.269 0.731 41 H 0.137 0.863 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.569 -0.979 -6.146 10.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.111 3.889 3 C -0.208 4.208 4 N -0.376 5.376 5 C 0.357 3.643 6 O -0.414 6.414 7 C -0.172 4.172 8 C -0.062 4.062 9 C -0.014 4.014 10 C -0.141 4.141 11 C -0.076 4.076 12 C -0.233 4.233 13 C -0.086 4.086 14 C -0.252 4.252 15 C 0.111 3.889 16 O -0.068 6.068 17 C -0.470 4.470 18 H 0.110 0.890 19 C -0.162 4.162 20 N -0.489 5.489 21 Si 0.763 3.237 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.201 1.201 25 C -0.062 4.062 26 C -0.113 4.113 27 C -0.087 4.087 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.258 0.742 35 H 0.145 0.855 36 H 0.132 0.868 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.147 0.853 40 H 0.079 0.921 41 H 0.155 0.845 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.343 -0.943 -6.618 10.691 hybrid contribution 0.593 0.458 0.484 0.892 sum -7.750 -0.485 -6.135 9.896 Atomic orbital electron populations 1.22073 0.92635 1.02988 1.02919 1.19403 0.94360 0.92121 0.83065 1.22088 1.02411 0.93422 1.02883 1.45946 1.53529 1.29530 1.08588 1.18344 0.77488 0.80253 0.88247 1.90771 1.46472 1.42474 1.61716 1.20105 1.04238 0.99486 0.93393 1.20845 0.96502 0.97662 0.91159 1.18537 0.96125 0.95223 0.91509 1.17761 1.05538 0.92315 0.98464 1.20743 0.97749 0.91248 0.97846 1.20541 1.05176 0.98465 0.99087 1.20842 0.96547 0.94603 0.96622 1.21126 1.07319 0.93209 1.03531 1.19285 0.92012 0.85255 0.92314 1.83971 1.65537 1.15529 1.41714 1.21391 1.32827 0.92031 1.00791 0.89009 1.25247 0.97367 0.94673 0.98896 1.70040 1.41246 1.02013 1.35580 0.85680 0.78897 0.79173 0.79909 1.19106 1.20162 1.20118 1.21446 0.92515 0.91806 1.00401 1.20131 1.01194 0.99742 0.90190 1.20179 0.98744 0.96074 0.93721 0.90620 0.91843 0.91777 0.91517 0.91908 0.90488 0.74165 0.85526 0.86762 0.87361 0.87367 0.85298 0.92057 0.84546 0.85609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.89 37.16 0.33 -1.03 16 2 C 0.20 2.35 1.33 -132.76 -0.18 2.17 16 3 C -0.15 -1.59 8.89 37.16 0.33 -1.26 16 4 N -0.72 -9.14 5.67 -49.58 -0.28 -9.42 16 5 C 0.57 9.67 8.35 -12.61 -0.11 9.56 16 6 O -0.54 -10.77 18.04 5.32 0.10 -10.67 16 7 C -0.17 -2.96 6.25 -105.07 -0.66 -3.61 16 8 C -0.04 -0.79 9.55 -38.81 -0.37 -1.16 16 9 C -0.01 -0.27 5.27 -104.95 -0.55 -0.82 16 10 C -0.14 -2.85 5.48 -104.73 -0.57 -3.42 16 11 C -0.06 -1.02 9.50 -39.27 -0.37 -1.40 16 12 C -0.21 -3.60 10.03 -39.59 -0.40 -4.00 16 13 C -0.07 -1.20 10.03 -39.55 -0.40 -1.60 16 14 C -0.23 -4.84 9.16 -39.44 -0.36 -5.20 16 15 C 0.17 3.80 6.55 -38.75 -0.25 3.55 16 16 O -0.17 -4.34 8.11 0.34 0.00 -4.33 16 17 C -0.39 -10.34 9.49 30.89 0.29 -10.05 16 18 H 0.09 2.25 5.21 -52.49 -0.27 1.98 16 19 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 20 N -0.85 -23.32 13.67 55.48 0.76 -22.57 16 21 Si 0.94 19.59 29.55 -169.99 -5.02 14.56 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 25 C -0.04 -0.82 8.79 -39.11 -0.34 -1.17 16 26 C -0.09 -1.52 10.02 -39.78 -0.40 -1.92 16 27 C -0.09 -1.32 4.97 -104.16 -0.52 -1.84 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.42 4.16 8.96 -40.82 -0.37 3.80 16 35 H 0.13 2.27 8.03 -52.49 -0.42 1.85 16 36 H 0.11 1.76 8.04 -52.49 -0.42 1.34 16 37 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 38 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 39 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 40 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 41 H 0.14 2.76 7.69 -52.49 -0.40 2.36 16 42 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 359.31 15.07 5.41 5.41 Total: -1.00 -30.92 359.31 -8.77 -39.69 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -5.12 Total: 9.50 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -4.62 Total: -22.18 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: 0.48 Total: -31.98 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.10 Total: -15.01 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.92 -8.77 -39.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586957.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.246 kcal (2) G-P(sol) polarization free energy of solvation -30.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds