Wall clock time and date at job start Tue Mar 31 2020 13:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 110.12646 * 2 1 4 4 N 1.46718 * 110.09578 * 238.42154 * 2 1 3 5 5 C 1.34413 * 108.77739 * 240.80152 * 4 2 1 6 6 O 1.21551 * 124.85613 * 180.02562 * 5 4 2 7 7 C 1.47588 * 110.28772 * 359.97438 * 5 4 2 8 8 C 1.39428 * 132.22799 * 180.02562 * 7 5 4 9 9 C 1.39119 * 119.72568 * 180.02562 * 8 7 5 10 10 C 1.48303 * 119.97973 * 179.97438 * 9 8 7 11 11 C 1.39280 * 120.15523 * 310.02166 * 10 9 8 12 12 C 1.38020 * 119.94231 * 179.97438 * 11 10 9 13 13 C 1.38444 * 120.27026 * 0.02562 * 12 11 10 14 14 C 1.38105 * 120.32402 * 0.02562 * 13 12 11 15 15 C 1.38761 * 120.04538 * 359.97438 * 14 13 12 16 16 O 1.35668 * 120.13104 * 180.02562 * 15 14 13 17 17 C 1.34815 * 116.99926 * 354.40137 * 16 15 14 18 18 H 1.07997 * 120.00308 * 5.06699 * 17 16 15 19 19 C 1.38656 * 119.99756 * 185.05875 * 17 16 15 20 20 N 1.31553 * 119.99994 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99863 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46972 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47091 * 120.00499 * 21 19 17 24 24 H 1.48502 * 109.47276 * 240.00617 * 21 19 17 25 25 C 1.39515 * 120.04330 * 0.24722 * 9 8 7 26 26 C 1.38218 * 120.06309 * 359.49776 * 25 9 8 27 27 C 1.37712 * 120.12823 * 0.50478 * 26 25 9 28 28 H 1.09007 * 109.46904 * 298.41698 * 1 2 3 29 29 H 1.08996 * 109.47057 * 58.41429 * 1 2 3 30 30 H 1.08994 * 109.46973 * 178.42145 * 1 2 3 31 31 H 1.08998 * 109.47149 * 181.58010 * 3 2 1 32 32 H 1.08998 * 109.46961 * 301.58157 * 3 2 1 33 33 H 1.09002 * 109.46616 * 61.58289 * 3 2 1 34 34 H 0.96996 * 125.61196 * 60.81719 * 4 2 1 35 35 H 1.07998 * 120.13904 * 359.97438 * 8 7 5 36 36 H 1.07998 * 120.03201 * 359.95069 * 11 10 9 37 37 H 1.08007 * 119.85956 * 180.02562 * 12 11 10 38 38 H 1.08007 * 119.83393 * 180.27653 * 13 12 11 39 39 H 1.07999 * 119.97345 * 180.02562 * 14 13 12 40 40 H 0.97000 * 119.99925 * 179.97438 * 20 19 17 41 41 H 1.07991 * 119.96624 * 179.74733 * 25 9 8 42 42 H 1.07994 * 119.93529 * 180.25448 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0565 1.4366 0.0000 4 7 2.0341 -0.7215 -1.1738 5 6 2.7658 -1.7690 -0.7565 6 8 3.3217 -2.5639 -1.4890 7 6 2.7987 -1.8152 0.7183 8 6 3.4106 -2.6901 1.6150 9 6 3.2680 -2.4862 2.9838 10 6 3.9160 -3.4136 3.9426 11 6 3.7526 -4.7898 3.8041 12 6 4.3581 -5.6490 4.6986 13 6 5.1278 -5.1486 5.7349 14 6 5.2964 -3.7860 5.8833 15 6 4.6937 -2.9102 4.9915 16 8 4.8586 -1.5712 5.1354 17 6 5.5227 -1.1505 6.2306 18 1 5.9667 -1.8700 6.9025 19 6 5.6358 0.2060 6.4942 20 7 5.0946 1.0825 5.6759 21 14 6.5565 0.7890 8.0114 22 1 7.0676 -0.3859 8.7621 23 1 7.6966 1.6468 7.5994 24 1 5.6378 1.5696 8.8785 25 6 2.5111 -1.4131 3.4550 26 6 1.9103 -0.5449 2.5630 27 6 2.0482 -0.7422 1.2071 28 1 -0.3633 0.4891 0.9039 29 1 -0.3633 0.5382 -0.8754 30 1 -0.3633 -1.0272 -0.0283 31 1 3.1460 1.4243 -0.0283 32 1 1.6761 1.9629 -0.8755 33 1 1.7222 1.9460 0.9039 34 1 1.8671 -0.4820 -2.0988 35 1 3.9922 -3.5230 1.2486 36 1 3.1523 -5.1844 2.9976 37 1 4.2308 -6.7160 4.5897 38 1 5.6021 -5.8275 6.4282 39 1 5.8984 -3.4018 6.6934 40 1 5.1734 2.0315 5.8606 41 1 2.3979 -1.2584 4.5178 42 1 1.3283 0.2874 2.9301 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243586957.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:27 Heat of formation + Delta-G solvation = -21.712681 kcal Electronic energy + Delta-G solvation = -26656.695095 eV Core-core repulsion = 22952.542137 eV Total energy + Delta-G solvation = -3704.152958 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.41358 -40.88545 -39.08047 -38.21745 -37.59774 -34.26815 -33.34318 -32.89630 -31.57954 -30.67660 -29.60059 -28.25500 -27.30323 -25.12485 -24.69885 -23.08260 -22.91849 -21.54008 -20.88158 -19.78795 -18.86885 -18.13276 -17.61219 -17.16904 -16.47183 -16.35210 -16.28084 -15.80446 -15.73701 -15.48749 -15.27075 -15.05849 -14.74349 -14.60316 -14.38673 -14.32845 -13.57820 -13.56780 -13.50514 -13.10391 -13.08603 -12.92266 -12.67357 -12.49845 -12.43096 -12.39618 -12.25952 -12.09893 -11.79363 -11.17743 -11.08753 -10.78118 -10.48140 -10.16725 -9.93144 -9.38460 -8.82546 -8.42737 -6.08673 -0.27002 0.09439 0.67888 0.78723 1.37612 1.44150 1.53371 1.73211 2.10884 2.18467 2.73018 2.88113 3.06189 3.19305 3.28150 3.47778 3.79142 3.82312 3.98141 4.06388 4.18760 4.27619 4.30320 4.44251 4.54935 4.63478 4.73041 4.75020 4.75976 4.78443 4.87441 4.95314 5.03507 5.12641 5.16303 5.17759 5.22571 5.31625 5.37878 5.48962 5.60935 5.69707 5.73851 5.77230 5.87968 5.93646 6.05645 6.21699 7.01779 7.11914 7.80174 8.78202 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011488 B = 0.004446 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.661946 B = 6296.543393 C = 8116.648183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.197 3.803 3 C -0.148 4.148 4 N -0.696 5.696 5 C 0.563 3.437 6 O -0.575 6.575 7 C -0.189 4.189 8 C -0.052 4.052 9 C -0.034 4.034 10 C -0.147 4.147 11 C -0.062 4.062 12 C -0.192 4.192 13 C -0.066 4.066 14 C -0.247 4.247 15 C 0.129 3.871 16 O -0.207 6.207 17 C -0.416 4.416 18 H 0.098 0.902 19 C -0.012 4.012 20 N -0.904 5.904 21 Si 1.009 2.991 22 H -0.256 1.256 23 H -0.273 1.273 24 H -0.268 1.268 25 C -0.060 4.060 26 C -0.092 4.092 27 C -0.074 4.074 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.042 0.958 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.434 0.566 35 H 0.126 0.874 36 H 0.140 0.860 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.121 0.879 40 H 0.271 0.729 41 H 0.112 0.888 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.867 -1.496 -6.754 12.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.111 3.889 3 C -0.206 4.206 4 N -0.353 5.353 5 C 0.352 3.648 6 O -0.456 6.456 7 C -0.192 4.192 8 C -0.071 4.071 9 C -0.035 4.035 10 C -0.148 4.148 11 C -0.080 4.080 12 C -0.211 4.211 13 C -0.084 4.084 14 C -0.267 4.267 15 C 0.078 3.922 16 O -0.112 6.112 17 C -0.492 4.492 18 H 0.115 0.885 19 C -0.211 4.211 20 N -0.541 5.541 21 Si 0.830 3.170 22 H -0.179 1.179 23 H -0.198 1.198 24 H -0.193 1.193 25 C -0.078 4.078 26 C -0.110 4.110 27 C -0.075 4.075 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.278 0.722 35 H 0.144 0.856 36 H 0.158 0.842 37 H 0.169 0.831 38 H 0.163 0.837 39 H 0.139 0.861 40 H 0.080 0.920 41 H 0.130 0.870 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.675 -1.483 -7.244 12.177 hybrid contribution 0.892 0.386 0.554 1.118 sum -8.783 -1.097 -6.691 11.096 Atomic orbital electron populations 1.22080 0.89566 1.03289 1.05141 1.19660 0.96423 0.92078 0.80729 1.22108 1.00967 0.92465 1.05047 1.45872 1.51662 1.27844 1.09874 1.18344 0.77824 0.80914 0.87748 1.90745 1.48422 1.44220 1.62228 1.20377 1.04633 1.00076 0.94092 1.20841 0.97040 0.98270 0.90949 1.18599 0.97071 0.95888 0.91901 1.18145 1.04902 0.93870 0.97913 1.21140 0.97849 0.90196 0.98805 1.21090 1.02377 1.00450 0.97138 1.21251 0.96191 0.93570 0.97406 1.21278 1.07508 0.94692 1.03190 1.19818 0.93577 0.84824 0.93994 1.83953 1.67513 1.17295 1.42443 1.21799 1.33256 0.92744 1.01392 0.88518 1.26346 0.98250 0.94476 1.02007 1.70167 1.43750 1.02258 1.37933 0.84648 0.77518 0.78784 0.76053 1.17938 1.19839 1.19294 1.21384 0.93832 0.92848 0.99783 1.20331 1.00720 0.99636 0.90269 1.20569 0.97105 0.95353 0.94486 0.89246 0.88820 0.92520 0.93851 0.88516 0.89583 0.72192 0.85639 0.84242 0.83132 0.83662 0.86080 0.91973 0.86972 0.82927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.89 71.98 0.64 -1.46 16 2 C 0.20 4.22 1.33 2.87 0.00 4.22 16 3 C -0.15 -2.74 8.89 71.98 0.64 -2.10 16 4 N -0.70 -16.30 5.67 -429.26 -2.43 -18.73 16 5 C 0.56 18.99 8.35 86.77 0.72 19.71 16 6 O -0.57 -23.26 18.04 -3.87 -0.07 -23.33 16 7 C -0.19 -6.68 6.25 -20.15 -0.13 -6.81 16 8 C -0.05 -2.00 9.55 22.77 0.22 -1.78 16 9 C -0.03 -1.42 5.27 -20.08 -0.11 -1.52 16 10 C -0.15 -6.22 5.48 -19.93 -0.11 -6.33 16 11 C -0.06 -2.14 9.50 22.47 0.21 -1.92 16 12 C -0.19 -5.91 10.03 22.27 0.22 -5.68 16 13 C -0.07 -2.21 10.03 22.29 0.22 -1.99 16 14 C -0.25 -10.51 9.16 22.36 0.20 -10.30 16 15 C 0.13 6.24 6.55 22.81 0.15 6.39 16 16 O -0.21 -11.64 8.11 -21.69 -0.18 -11.82 16 17 C -0.42 -23.08 9.49 67.92 0.64 -22.44 16 18 H 0.10 5.01 5.21 -2.91 -0.02 4.99 16 19 C -0.01 -0.62 5.49 84.83 0.47 -0.16 16 20 N -0.90 -51.97 13.67 21.61 0.30 -51.67 16 21 Si 1.01 41.37 29.55 68.60 2.03 43.40 16 22 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 23 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 24 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 25 C -0.06 -2.41 8.79 22.57 0.20 -2.22 16 26 C -0.09 -2.98 10.02 22.14 0.22 -2.76 16 27 C -0.07 -2.22 4.97 -19.56 -0.10 -2.32 16 28 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.43 7.45 8.96 -92.71 -0.83 6.62 16 35 H 0.13 4.69 8.03 -2.91 -0.02 4.67 16 36 H 0.14 4.06 8.04 -2.91 -0.02 4.04 16 37 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 38 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 39 H 0.12 5.21 5.64 -2.91 -0.02 5.19 16 40 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 41 H 0.11 4.99 7.69 -2.92 -0.02 4.97 16 42 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -73.23 359.31 4.21 -69.03 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 0.23 Total: 32.60 kcal Atomic # 6 Polarization: -43.81 SS G_CDS: 4.33 Total: -39.47 kcal Atomic # 7 Polarization: -68.27 SS G_CDS: -2.14 Total: -70.41 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.25 Total: -35.15 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -73.23 4.21 -69.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586957.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.316 kcal (2) G-P(sol) polarization free energy of solvation -73.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds