Wall clock time and date at job start Tue Mar 31 2020 13:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37873 * 119.96247 * 2 1 4 4 C 1.39438 * 119.95457 * 180.02562 * 3 2 1 5 5 C 1.48243 * 120.05717 * 179.97438 * 4 3 2 6 6 C 1.39313 * 120.15889 * 129.99729 * 5 4 3 7 7 C 1.38014 * 119.93966 * 180.02562 * 6 5 4 8 8 C 1.38447 * 120.27384 * 0.02562 * 7 6 5 9 9 C 1.38115 * 120.32743 * 359.97438 * 8 7 6 10 10 C 1.38744 * 120.05563 * 0.02562 * 9 8 7 11 11 O 1.35664 * 120.13669 * 179.97438 * 10 9 8 12 12 C 1.34811 * 117.00482 * 354.40209 * 11 10 9 13 13 H 1.08005 * 119.99427 * 5.05892 * 12 11 10 14 14 C 1.38636 * 120.00456 * 185.06869 * 12 11 10 15 15 N 1.31567 * 119.99764 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 120.00146 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47552 * 89.99406 * 16 14 12 18 18 H 1.48504 * 109.47248 * 209.99854 * 16 14 12 19 19 H 1.48502 * 109.47052 * 329.99318 * 16 14 12 20 20 C 1.39477 * 119.87689 * 0.23891 * 4 3 2 21 21 C 1.37803 * 119.93552 * 359.52677 * 20 4 3 22 22 C 1.38968 * 119.96563 * 180.02562 * 2 1 3 23 23 N 1.39775 * 120.05151 * 0.02562 * 22 2 1 24 24 C 1.34539 * 120.48833 * 198.56216 * 23 22 2 25 25 O 1.21293 * 119.60667 * 180.76634 * 24 23 22 26 26 C 1.50491 * 120.78074 * 0.78227 * 24 23 22 27 27 C 1.50723 * 120.08821 * 180.24961 * 21 20 4 28 28 H 1.08999 * 109.46973 * 90.00476 * 1 2 3 29 29 H 1.08998 * 109.46982 * 209.99904 * 1 2 3 30 30 H 1.09000 * 109.47197 * 329.99815 * 1 2 3 31 31 H 1.07996 * 120.02445 * 359.97170 * 3 2 1 32 32 H 1.07995 * 120.03018 * 0.04471 * 6 5 4 33 33 H 1.08001 * 119.85711 * 180.02562 * 7 6 5 34 34 H 1.08000 * 119.83376 * 179.71929 * 8 7 6 35 35 H 1.08002 * 119.97152 * 179.97438 * 9 8 7 36 36 H 0.97003 * 119.99798 * 180.02562 * 15 14 12 37 37 H 1.08002 * 120.03110 * 179.75791 * 20 4 3 38 38 H 0.97006 * 119.75528 * 18.54038 * 23 22 2 39 39 H 1.09003 * 109.39993 * 84.87875 * 26 24 23 40 40 H 1.09000 * 109.40010 * 204.61906 * 26 24 23 41 41 H 1.08995 * 109.46025 * 26.29117 * 27 21 20 42 42 H 1.09004 * 109.47265 * 266.30347 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1957 1.1945 0.0000 4 6 3.5900 1.1943 -0.0005 5 6 4.3327 2.4773 -0.0011 6 6 5.3538 2.6953 0.9212 7 6 6.0419 3.8917 0.9170 8 6 5.7216 4.8778 -0.0004 9 6 4.7114 4.6735 -0.9198 10 6 4.0108 3.4760 -0.9277 11 8 3.0178 3.2738 -1.8297 12 6 2.6822 4.3170 -2.6148 13 1 3.2507 5.2341 -2.5664 14 6 1.6073 4.2128 -3.4842 15 7 0.9151 3.0956 -3.5434 16 14 1.1419 5.6586 -4.5715 17 1 1.8740 5.5649 -5.8600 18 1 -0.3202 5.6332 -4.8299 19 1 1.5018 6.9274 -3.8888 20 6 4.2847 -0.0152 -0.0061 21 6 3.5916 -1.2063 -0.0012 22 6 2.2012 -1.2039 -0.0005 23 7 1.5027 -2.4146 -0.0016 24 6 2.1134 -3.5554 0.3669 25 8 1.4960 -4.5992 0.3467 26 6 3.5533 -3.5515 0.8043 27 6 4.3388 -2.5153 -0.0015 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6555 2.1296 -0.0005 32 1 5.6068 1.9288 1.6387 33 1 6.8335 4.0592 1.6323 34 1 6.2617 5.8131 0.0055 35 1 4.4660 5.4469 -1.6326 36 1 0.1632 3.0225 -4.1520 37 1 5.3647 -0.0183 -0.0105 38 1 0.5706 -2.4324 -0.2698 39 1 3.6090 -3.3047 1.8645 40 1 3.9841 -4.5393 0.6407 41 1 5.3207 -2.3730 0.4497 42 1 4.4575 -2.8657 -1.0269 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243587823.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:42 Heat of formation + Delta-G solvation = -42.771970 kcal Electronic energy + Delta-G solvation = -26657.483376 eV Core-core repulsion = 22952.417219 eV Total energy + Delta-G solvation = -3705.066157 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.02848 -40.83334 -39.62215 -38.04397 -36.34185 -35.51010 -34.24984 -33.05924 -31.59961 -30.66864 -29.32088 -27.86821 -27.23769 -25.52250 -24.40650 -23.33004 -22.63957 -21.63253 -20.05710 -19.75549 -18.83380 -18.58638 -18.09805 -17.08853 -16.63883 -16.30153 -16.20084 -15.79933 -15.69840 -15.32333 -15.16352 -14.95349 -14.80985 -14.65067 -14.33963 -14.29413 -13.79748 -13.60326 -13.49662 -13.25815 -13.04364 -12.93441 -12.66175 -12.55139 -12.40978 -12.28346 -12.14145 -12.04581 -11.82800 -11.52226 -11.11866 -11.05910 -10.77243 -9.75788 -9.50999 -9.08289 -8.52934 -8.42155 -6.08131 0.01520 0.45468 0.71647 0.83078 1.35044 1.42883 1.50247 1.53623 2.06086 2.17700 2.75605 2.92408 3.24476 3.41056 3.54465 3.71280 3.77222 3.84854 4.06810 4.23761 4.25583 4.29917 4.37108 4.42502 4.45928 4.57672 4.67028 4.68805 4.73549 4.84514 4.91941 4.96610 5.09567 5.13997 5.16915 5.20501 5.24133 5.29646 5.49115 5.61703 5.67194 5.71729 5.81097 5.87298 5.95280 6.07919 6.23616 6.29382 6.92782 7.02276 7.83884 8.78223 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011949 B = 0.004346 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.802381 B = 6440.753589 C = 8275.219783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.120 4.120 3 C -0.075 4.075 4 C -0.045 4.045 5 C -0.139 4.139 6 C -0.058 4.058 7 C -0.192 4.192 8 C -0.072 4.072 9 C -0.252 4.252 10 C 0.123 3.877 11 O -0.208 6.208 12 C -0.414 4.414 13 H 0.096 0.904 14 C -0.013 4.013 15 N -0.906 5.906 16 Si 1.007 2.993 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.256 1.256 20 C -0.084 4.084 21 C -0.119 4.119 22 C 0.137 3.863 23 N -0.655 5.655 24 C 0.516 3.484 25 O -0.577 6.577 26 C -0.129 4.129 27 C -0.068 4.068 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.141 0.859 35 H 0.115 0.885 36 H 0.269 0.731 37 H 0.153 0.847 38 H 0.409 0.591 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.294 -5.929 9.758 14.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.122 4.122 3 C -0.094 4.094 4 C -0.046 4.046 5 C -0.140 4.140 6 C -0.076 4.076 7 C -0.210 4.210 8 C -0.090 4.090 9 C -0.271 4.271 10 C 0.072 3.928 11 O -0.114 6.114 12 C -0.490 4.490 13 H 0.114 0.886 14 C -0.212 4.212 15 N -0.544 5.544 16 Si 0.828 3.172 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.180 1.180 20 C -0.102 4.102 21 C -0.121 4.121 22 C 0.042 3.958 23 N -0.299 5.299 24 C 0.307 3.693 25 O -0.456 6.456 26 C -0.168 4.168 27 C -0.105 4.105 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.168 0.832 33 H 0.170 0.830 34 H 0.159 0.841 35 H 0.133 0.867 36 H 0.078 0.922 37 H 0.170 0.830 38 H 0.247 0.753 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.818 -6.846 9.651 14.182 hybrid contribution -1.380 1.267 -1.207 2.228 sum 6.438 -5.579 8.443 11.994 Atomic orbital electron populations 1.20669 0.90259 1.03175 1.02293 1.19561 0.96875 0.91306 1.04479 1.20802 0.94053 0.96470 0.98083 1.18705 0.92373 0.92852 1.00684 1.18241 1.02363 0.93731 0.99679 1.21185 0.92479 0.98021 0.95928 1.21111 1.03587 0.94093 1.02202 1.21223 0.94740 0.99697 0.93316 1.21256 1.02276 0.98423 1.05137 1.19944 0.89286 0.94044 0.89522 1.83967 1.46588 1.37904 1.42935 1.21735 1.14911 0.93700 1.18681 0.88646 1.26334 0.94911 1.01058 0.98919 1.70190 1.19454 1.27353 1.37365 0.84734 0.77864 0.76793 0.77805 1.19204 1.19855 1.17962 1.21031 1.00526 0.89294 0.99333 1.19671 0.90793 0.96891 1.04745 1.17439 0.91397 0.84341 1.02632 1.43624 1.15393 1.06127 1.64763 1.21483 0.91356 0.81607 0.74864 1.90736 1.68431 1.31594 1.54883 1.21763 0.88366 1.03381 1.03305 1.20508 0.99583 0.88678 1.01731 0.91868 0.90095 0.91362 0.88896 0.83154 0.83045 0.84116 0.86675 0.92209 0.82952 0.75266 0.86041 0.85453 0.85737 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.34 9.45 71.24 0.67 -2.67 16 2 C -0.12 -4.25 5.89 -19.77 -0.12 -4.37 16 3 C -0.08 -3.12 8.42 22.47 0.19 -2.93 16 4 C -0.05 -1.73 5.28 -20.03 -0.11 -1.83 16 5 C -0.14 -5.51 5.48 -19.93 -0.11 -5.62 16 6 C -0.06 -1.78 9.51 22.48 0.21 -1.56 16 7 C -0.19 -5.37 10.03 22.27 0.22 -5.15 16 8 C -0.07 -2.31 10.03 22.29 0.22 -2.09 16 9 C -0.25 -10.55 9.16 22.36 0.20 -10.34 16 10 C 0.12 5.84 6.55 22.82 0.15 5.99 16 11 O -0.21 -11.80 8.10 -21.60 -0.17 -11.98 16 12 C -0.41 -23.27 9.49 67.92 0.64 -22.63 16 13 H 0.10 5.00 5.21 -2.91 -0.02 4.98 16 14 C -0.01 -0.74 5.49 84.83 0.47 -0.27 16 15 N -0.91 -53.50 13.67 21.61 0.30 -53.20 16 16 Si 1.01 42.22 29.55 68.60 2.03 44.24 16 17 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 18 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 19 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 20 C -0.08 -2.49 9.15 22.47 0.21 -2.28 16 21 C -0.12 -3.20 5.65 -19.77 -0.11 -3.31 16 22 C 0.14 4.19 6.49 38.24 0.25 4.44 16 23 N -0.66 -18.01 5.08 -303.92 -1.54 -19.56 16 24 C 0.52 13.60 7.72 87.63 0.68 14.27 16 25 O -0.58 -18.96 17.91 -3.07 -0.05 -19.01 16 26 C -0.13 -2.23 6.08 29.77 0.18 -2.05 16 27 C -0.07 -1.21 6.00 29.85 0.18 -1.03 16 28 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.08 2.02 6.86 -2.39 -0.02 2.01 16 30 H 0.07 2.12 8.08 -2.39 -0.02 2.11 16 31 H 0.09 4.47 7.67 -2.91 -0.02 4.44 16 32 H 0.15 3.46 8.04 -2.91 -0.02 3.44 16 33 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 34 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 35 H 0.12 4.98 5.64 -2.91 -0.02 4.96 16 36 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 37 H 0.15 3.58 8.04 -2.91 -0.02 3.56 16 38 H 0.41 10.82 7.21 -92.70 -0.67 10.15 16 39 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.12 1.41 8.06 -2.39 -0.02 1.39 16 42 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -73.26 353.32 4.99 -68.28 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: 0.40 Total: 34.65 kcal Atomic # 6 Polarization: -47.46 SS G_CDS: 4.03 Total: -43.42 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -1.25 Total: -72.76 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.23 Total: -30.99 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Total: -73.26 4.99 -68.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587823.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.505 kcal (2) G-P(sol) polarization free energy of solvation -73.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds