Wall clock time and date at job start Tue Mar 31 2020 13:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 110.12390 * 2 1 4 4 N 1.46721 * 110.09668 * 238.41766 * 2 1 3 5 5 C 1.34401 * 108.77712 * 240.79683 * 4 2 1 6 6 O 1.21558 * 124.85473 * 179.97438 * 5 4 2 7 7 C 1.47587 * 110.29064 * 0.02562 * 5 4 2 8 8 C 1.39434 * 132.22906 * 180.02562 * 7 5 4 9 9 C 1.39106 * 119.72142 * 179.74051 * 8 7 5 10 10 C 1.48342 * 119.97205 * 180.27674 * 9 8 7 11 11 C 1.39432 * 120.05364 * 359.95917 * 10 9 8 12 12 C 1.37841 * 119.94475 * 179.74090 * 11 10 9 13 13 C 1.38997 * 120.05436 * 0.50969 * 12 11 10 14 14 O 1.35695 * 119.94820 * 179.73860 * 13 12 11 15 15 C 1.34817 * 116.99967 * 174.47107 * 14 13 12 16 16 H 1.08004 * 119.99648 * 5.06453 * 15 14 13 17 17 C 1.38646 * 120.00302 * 185.05646 * 15 14 13 18 18 N 1.31559 * 119.99527 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00164 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47230 * 0.02562 * 19 17 15 21 21 H 1.48490 * 109.47264 * 120.00344 * 19 17 15 22 22 H 1.48510 * 109.47084 * 240.00260 * 19 17 15 23 23 C 1.38999 * 120.10357 * 359.76513 * 13 12 11 24 24 C 1.37843 * 120.05035 * 359.97438 * 23 13 12 25 25 C 1.39497 * 120.04839 * 0.50644 * 9 8 7 26 26 C 1.38216 * 120.06442 * 359.47389 * 25 9 8 27 27 C 1.37709 * 120.12746 * 0.27316 * 26 25 9 28 28 H 1.08998 * 109.47182 * 298.41980 * 1 2 3 29 29 H 1.09002 * 109.46914 * 58.42052 * 1 2 3 30 30 H 1.08996 * 109.47018 * 178.41692 * 1 2 3 31 31 H 1.08998 * 109.46962 * 181.58033 * 3 2 1 32 32 H 1.09004 * 109.46693 * 301.57822 * 3 2 1 33 33 H 1.08997 * 109.47090 * 61.57956 * 3 2 1 34 34 H 0.96995 * 125.60943 * 60.79990 * 4 2 1 35 35 H 1.07994 * 120.13738 * 359.97438 * 8 7 5 36 36 H 1.07994 * 120.02200 * 359.97438 * 11 10 9 37 37 H 1.07999 * 119.96923 * 180.25206 * 12 11 10 38 38 H 0.97005 * 119.99733 * 179.97438 * 18 17 15 39 39 H 1.08000 * 119.97711 * 179.97438 * 23 13 12 40 40 H 1.07999 * 120.02602 * 180.02562 * 24 23 13 41 41 H 1.08000 * 119.96332 * 179.74348 * 25 9 8 42 42 H 1.08002 * 119.93346 * 180.25195 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0564 1.4366 0.0000 4 7 2.0342 -0.7216 -1.1738 5 6 2.7659 -1.7689 -0.7564 6 8 3.3211 -2.5644 -1.4889 7 6 2.7978 -1.8157 0.7183 8 6 3.4095 -2.6908 1.6151 9 6 3.2708 -2.4840 2.9837 10 6 3.9243 -3.4080 3.9428 11 6 4.6767 -4.4840 3.4735 12 6 5.2874 -5.3381 4.3666 13 6 5.1449 -5.1335 5.7341 14 8 5.7426 -5.9787 6.6114 15 6 5.6618 -5.6611 7.9191 16 1 5.0703 -4.8139 8.2334 17 6 6.3379 -6.4221 8.8604 18 7 7.0587 -7.4538 8.4774 19 14 6.2255 -5.9823 10.6724 20 1 5.3581 -4.7885 10.8392 21 1 5.6451 -7.1241 11.4238 22 1 7.5835 -5.6850 11.1949 23 6 4.3906 -4.0649 6.2043 24 6 3.7825 -3.2050 5.3150 25 6 2.5138 -1.4112 3.4549 26 6 1.9092 -0.5457 2.5629 27 6 2.0475 -0.7426 1.2071 28 1 -0.3633 0.4891 0.9038 29 1 -0.3633 0.5382 -0.8755 30 1 -0.3633 -1.0272 -0.0284 31 1 3.1460 1.4243 -0.0283 32 1 1.6761 1.9629 -0.8755 33 1 1.7222 1.9460 0.9038 34 1 1.8669 -0.4822 -2.0987 35 1 3.9916 -3.5233 1.2487 36 1 4.7840 -4.6459 2.4112 37 1 5.8736 -6.1693 4.0036 38 1 7.5320 -7.9861 9.1359 39 1 4.2809 -3.9081 7.2672 40 1 3.1968 -2.3745 5.6807 41 1 2.4036 -1.2544 4.5178 42 1 1.3270 0.2866 2.9301 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243591843.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:30 Heat of formation + Delta-G solvation = -23.874574 kcal Electronic energy + Delta-G solvation = -25484.324091 eV Core-core repulsion = 21780.077387 eV Total energy + Delta-G solvation = -3704.246704 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.40945 -40.87701 -39.43057 -38.41897 -37.32217 -34.36228 -33.16167 -32.60912 -32.12278 -31.28999 -29.12999 -28.21537 -27.39329 -25.26043 -24.55665 -23.44213 -22.74705 -21.44490 -20.88476 -19.83201 -19.01074 -18.11456 -17.81157 -17.25347 -16.44284 -16.34929 -16.24824 -15.87369 -15.58746 -15.54888 -15.21175 -15.10778 -14.80642 -14.49572 -14.34737 -14.17917 -13.92914 -13.60506 -13.54744 -13.16085 -13.10298 -12.90175 -12.83350 -12.54855 -12.51976 -12.36337 -12.17193 -12.07805 -11.73833 -11.22934 -11.02029 -10.91132 -10.46331 -10.12235 -9.93718 -9.87393 -8.58901 -8.48836 -6.16130 -0.35336 -0.00735 0.55602 0.93003 1.36836 1.45105 1.55546 1.76195 2.12936 2.17214 2.66017 2.95865 3.06550 3.23181 3.25941 3.44467 3.75148 3.83161 3.94639 4.03350 4.09883 4.14409 4.29271 4.36343 4.47534 4.66192 4.69780 4.78080 4.79077 4.82042 4.87913 4.91487 5.02912 5.09165 5.14997 5.22012 5.25442 5.29041 5.35255 5.37566 5.53602 5.64929 5.70893 5.82305 5.87914 5.94536 6.00088 6.11945 6.95318 7.11636 7.74164 8.74046 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.028985 B = 0.002351 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.789971 B =11909.141057 C =12681.028312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.193 3.807 3 C -0.146 4.146 4 N -0.701 5.701 5 C 0.554 3.446 6 O -0.581 6.581 7 C -0.182 4.182 8 C -0.068 4.068 9 C -0.029 4.029 10 C -0.138 4.138 11 C -0.061 4.061 12 C -0.204 4.204 13 C 0.122 3.878 14 O -0.227 6.227 15 C -0.413 4.413 16 H 0.109 0.891 17 C -0.024 4.024 18 N -0.920 5.920 19 Si 1.021 2.979 20 H -0.246 1.246 21 H -0.270 1.270 22 H -0.270 1.270 23 C -0.238 4.238 24 C -0.046 4.046 25 C -0.086 4.086 26 C -0.081 4.081 27 C -0.079 4.079 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.431 0.569 35 H 0.117 0.883 36 H 0.137 0.863 37 H 0.113 0.887 38 H 0.273 0.727 39 H 0.130 0.870 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.279 22.734 -12.473 30.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.108 3.892 3 C -0.204 4.204 4 N -0.357 5.357 5 C 0.342 3.658 6 O -0.463 6.463 7 C -0.185 4.185 8 C -0.088 4.088 9 C -0.030 4.030 10 C -0.139 4.139 11 C -0.079 4.079 12 C -0.223 4.223 13 C 0.071 3.929 14 O -0.133 6.133 15 C -0.489 4.489 16 H 0.126 0.874 17 C -0.222 4.222 18 N -0.558 5.558 19 Si 0.840 3.160 20 H -0.169 1.169 21 H -0.195 1.195 22 H -0.195 1.195 23 C -0.257 4.257 24 C -0.064 4.064 25 C -0.104 4.104 26 C -0.098 4.098 27 C -0.080 4.080 28 H 0.116 0.884 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.275 0.725 35 H 0.135 0.865 36 H 0.155 0.845 37 H 0.131 0.869 38 H 0.082 0.918 39 H 0.148 0.852 40 H 0.176 0.824 41 H 0.177 0.823 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -15.744 21.959 -12.749 29.876 hybrid contribution 0.726 -0.954 0.131 1.206 sum -15.018 21.005 -12.618 28.739 Atomic orbital electron populations 1.22108 0.90112 1.02911 1.05281 1.19743 0.96080 0.92545 0.80879 1.22109 1.01174 0.91849 1.05282 1.45994 1.51566 1.28006 1.10127 1.18611 0.77919 0.80870 0.88388 1.90775 1.48665 1.44251 1.62587 1.20324 1.04464 1.00125 0.93584 1.20894 0.97785 0.98134 0.91938 1.18635 0.97622 0.95573 0.91123 1.18527 1.04399 0.98030 0.92912 1.21033 0.94701 0.93085 0.99032 1.20337 1.07724 1.04063 0.90201 1.20009 0.92094 0.90070 0.90772 1.83937 1.67052 1.44811 1.17511 1.21953 1.31986 1.15840 0.79108 0.87411 1.26666 0.94755 0.95146 1.05611 1.70203 1.30554 1.18113 1.36893 0.84490 0.78951 0.79132 0.73402 1.16899 1.19499 1.19522 1.21253 1.04790 0.98542 1.01125 1.21183 0.96258 0.97702 0.91236 1.21721 0.94501 0.92430 1.01723 1.20564 0.99622 1.00297 0.89348 1.20676 0.97004 0.95007 0.95304 0.88353 0.89564 0.93241 0.93252 0.89556 0.88355 0.72540 0.86467 0.84517 0.86857 0.91780 0.85220 0.82399 0.82343 0.80800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.89 71.98 0.64 -0.35 16 2 C 0.19 2.22 1.33 2.87 0.00 2.23 16 3 C -0.15 -1.00 8.89 71.98 0.64 -0.36 16 4 N -0.70 -11.59 5.67 -429.27 -2.43 -14.03 16 5 C 0.55 14.95 8.35 86.77 0.72 15.67 16 6 O -0.58 -20.89 18.04 -3.90 -0.07 -20.96 16 7 C -0.18 -4.61 6.25 -20.16 -0.13 -4.74 16 8 C -0.07 -1.93 9.48 22.77 0.22 -1.71 16 9 C -0.03 -0.78 5.87 -20.08 -0.12 -0.89 16 10 C -0.14 -4.46 5.88 -20.01 -0.12 -4.58 16 11 C -0.06 -2.19 9.41 22.46 0.21 -1.98 16 12 C -0.20 -8.93 9.98 22.36 0.22 -8.70 16 13 C 0.12 6.00 6.65 22.63 0.15 6.15 16 14 O -0.23 -13.53 9.75 -22.01 -0.21 -13.74 16 15 C -0.41 -23.47 9.48 67.92 0.64 -22.82 16 16 H 0.11 5.50 5.19 -2.91 -0.02 5.49 16 17 C -0.02 -1.34 5.49 84.83 0.47 -0.88 16 18 N -0.92 -56.06 13.67 21.61 0.30 -55.77 16 19 Si 1.02 41.72 29.55 68.60 2.03 43.74 16 20 H -0.25 -9.07 7.11 99.48 0.71 -8.37 16 21 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 22 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 23 C -0.24 -9.84 9.15 22.36 0.20 -9.64 16 24 C -0.05 -1.49 9.42 22.46 0.21 -1.27 16 25 C -0.09 -1.58 9.43 22.57 0.21 -1.37 16 26 C -0.08 -1.09 10.02 22.14 0.22 -0.87 16 27 C -0.08 -1.33 4.97 -19.57 -0.10 -1.43 16 28 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.43 5.10 8.96 -92.71 -0.83 4.26 16 35 H 0.12 3.53 6.18 -2.91 -0.02 3.51 16 36 H 0.14 4.33 6.19 -2.91 -0.02 4.31 16 37 H 0.11 4.96 8.06 -2.91 -0.02 4.93 16 38 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 39 H 0.13 5.30 5.62 -2.91 -0.02 5.28 16 40 H 0.16 3.59 6.18 -2.91 -0.02 3.57 16 41 H 0.16 2.15 6.18 -2.91 -0.02 2.14 16 42 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 Total: -1.00 -79.92 354.73 4.17 -75.75 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.25 Total: 22.55 kcal Atomic # 6 Polarization: -41.86 SS G_CDS: 4.31 Total: -37.55 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -2.14 Total: -69.79 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.28 Total: -34.70 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -79.92 4.17 -75.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591843.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.876 kcal (2) G-P(sol) polarization free energy of solvation -79.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds