Wall clock time and date at job start Tue Mar 31 2020 13:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 110.45602 * 2 1 4 4 C 1.51164 * 110.50982 * 122.60948 * 2 1 3 5 5 C 1.37433 * 132.73525 * 298.92083 * 4 2 1 6 6 C 1.39546 * 119.81202 * 180.12046 * 5 4 2 7 7 C 1.48282 * 120.21754 * 179.81293 * 6 5 4 8 8 C 1.39461 * 120.05604 * 359.50363 * 7 6 5 9 9 C 1.37826 * 119.94499 * 179.81202 * 8 7 6 10 10 C 1.39001 * 120.05911 * 0.44848 * 9 8 7 11 11 O 1.35695 * 119.95030 * 179.76369 * 10 9 8 12 12 C 1.34814 * 117.00393 * 174.47157 * 11 10 9 13 13 H 1.08007 * 119.99530 * 5.06322 * 12 11 10 14 14 C 1.38637 * 120.00465 * 185.05434 * 12 11 10 15 15 N 1.31566 * 119.99695 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00094 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47165 * 60.00210 * 16 14 12 18 18 H 1.48504 * 109.47199 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47225 * 300.00158 * 16 14 12 20 20 C 1.39009 * 120.10580 * 359.78731 * 10 9 8 21 21 C 1.37838 * 120.05324 * 359.97438 * 20 10 9 22 22 C 1.39460 * 119.56248 * 359.59745 * 6 5 4 23 23 C 1.37660 * 120.24875 * 0.18703 * 22 6 5 24 24 C 1.39035 * 106.32805 * 118.64400 * 4 2 1 25 25 N 1.39490 * 110.18981 * 359.97438 * 24 4 2 26 26 C 1.34343 * 112.28748 * 0.02562 * 25 24 4 27 27 O 1.21295 * 126.43281 * 179.97438 * 26 25 24 28 28 H 1.08996 * 109.47394 * 297.39064 * 1 2 3 29 29 H 1.09008 * 109.47128 * 57.39124 * 1 2 3 30 30 H 1.09002 * 109.47423 * 177.39048 * 1 2 3 31 31 H 1.09002 * 109.47124 * 182.60865 * 3 2 1 32 32 H 1.09004 * 109.47383 * 302.60494 * 3 2 1 33 33 H 1.09003 * 109.47317 * 62.60858 * 3 2 1 34 34 H 1.07994 * 120.09650 * 359.97438 * 5 4 2 35 35 H 1.08007 * 120.02038 * 0.02562 * 8 7 6 36 36 H 1.08000 * 119.97243 * 180.21250 * 9 8 7 37 37 H 0.96995 * 119.99933 * 179.97438 * 15 14 12 38 38 H 1.07992 * 119.97335 * 179.97438 * 20 10 9 39 39 H 1.07996 * 120.02331 * 180.02562 * 21 20 10 40 40 H 1.08002 * 119.87158 * 180.21212 * 22 6 5 41 41 H 1.07998 * 119.85549 * 180.02562 * 23 22 6 42 42 H 0.97007 * 123.85368 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0647 1.4335 0.0000 4 6 2.0597 -0.7630 1.1926 5 6 1.9292 -0.5816 2.5487 6 6 2.5492 -1.4683 3.4300 7 6 2.4178 -1.2787 4.8948 8 6 1.6816 -0.2060 5.3970 9 6 1.5577 -0.0342 6.7589 10 6 2.1736 -0.9236 7.6317 11 8 2.0542 -0.7496 8.9722 12 6 2.5771 -1.7081 9.7629 13 1 3.1348 -2.5235 9.3262 14 6 2.3992 -1.6472 11.1364 15 7 1.7195 -0.6541 11.6683 16 14 3.1244 -2.9751 12.2320 17 1 4.5993 -3.0059 12.0624 18 1 2.7947 -2.6816 13.6499 19 1 2.5551 -4.2937 11.8546 20 6 2.9120 -1.9908 7.1337 21 6 3.0348 -2.1697 5.7725 22 6 3.2894 -2.5365 2.9241 23 6 3.4113 -2.7134 1.5644 24 6 2.7957 -1.8259 0.6812 25 7 2.7751 -1.7989 -0.7133 26 6 2.0602 -0.7674 -1.1924 27 8 1.8745 -0.5007 -2.3610 28 1 -0.3634 0.4728 0.9124 29 1 -0.3634 0.5538 -0.8657 30 1 -0.3634 -1.0266 -0.0468 31 1 3.1536 1.4151 -0.0468 32 1 1.6729 1.9675 -0.8657 33 1 1.7487 1.9392 0.9125 34 1 1.3505 0.2460 2.9312 35 1 1.2061 0.4875 4.7192 36 1 0.9849 0.7944 7.1483 37 1 1.5947 -0.6117 12.6292 38 1 3.3899 -2.6803 7.8137 39 1 3.6082 -2.9993 5.3860 40 1 3.7685 -3.2277 3.6017 41 1 3.9857 -3.5430 1.1795 42 1 3.2262 -2.4502 -1.2731 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243592646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:47 Heat of formation + Delta-G solvation = -8.701349 kcal Electronic energy + Delta-G solvation = -25566.187871 eV Core-core repulsion = 21862.599127 eV Total energy + Delta-G solvation = -3703.588744 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.87222 -39.35366 -38.46408 -36.88851 -35.41092 -34.84070 -32.46294 -30.98338 -30.60553 -29.70647 -27.63749 -27.28995 -25.50380 -25.17655 -22.94109 -22.55844 -21.08806 -20.55536 -19.70910 -18.26543 -17.72905 -17.28393 -16.98402 -15.88399 -15.77184 -15.10324 -14.73624 -14.67518 -14.27570 -14.15846 -13.94609 -13.78415 -13.74742 -13.42566 -12.98545 -12.97782 -12.81169 -12.58944 -12.39063 -12.19248 -12.02552 -11.78466 -11.75507 -11.59833 -11.13846 -11.03309 -10.93184 -10.60347 -10.58245 -10.44021 -10.12776 -9.44796 -9.02807 -8.95851 -8.34212 -8.30544 -6.94472 -6.58394 -4.14860 0.87768 1.29525 2.05278 2.12605 2.56209 2.81577 3.06109 3.07340 3.10175 3.77773 3.86430 3.87943 4.07431 4.56100 4.63724 4.74943 4.78384 4.95218 5.00204 5.14041 5.14833 5.28846 5.36853 5.37731 5.47920 5.49216 5.52742 5.60857 5.65352 5.79901 5.90516 5.93638 5.95720 6.06308 6.18650 6.24176 6.47653 6.54544 6.56580 6.62256 6.77784 6.87541 6.99899 7.16169 7.26152 7.31363 7.67105 7.77077 7.86324 8.86526 9.54389 10.58662 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.031784 B = 0.002333 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.729055 B =12001.012493 C =12686.783877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.054 4.054 3 C -0.125 4.125 4 C -0.120 4.120 5 C -0.076 4.076 6 C -0.010 4.010 7 C -0.159 4.159 8 C -0.057 4.057 9 C -0.192 4.192 10 C 0.159 3.841 11 O -0.169 6.169 12 C -0.393 4.393 13 H 0.094 0.906 14 C 0.041 3.959 15 N -0.857 5.857 16 Si 0.943 3.057 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.269 1.269 20 C -0.235 4.235 21 C -0.052 4.052 22 C -0.099 4.099 23 C -0.125 4.125 24 C 0.109 3.891 25 N -0.658 5.658 26 C 0.535 3.465 27 O -0.508 6.508 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.129 0.871 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.273 0.727 38 H 0.130 0.870 39 H 0.112 0.888 40 H 0.132 0.868 41 H 0.123 0.877 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.536 -1.752 -18.726 18.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.057 4.057 3 C -0.183 4.183 4 C -0.123 4.123 5 C -0.094 4.094 6 C -0.011 4.011 7 C -0.160 4.160 8 C -0.075 4.075 9 C -0.212 4.212 10 C 0.104 3.896 11 O -0.071 6.071 12 C -0.468 4.468 13 H 0.112 0.888 14 C -0.165 4.165 15 N -0.490 5.490 16 Si 0.767 3.233 17 H -0.194 1.194 18 H -0.202 1.202 19 H -0.194 1.194 20 C -0.254 4.254 21 C -0.070 4.070 22 C -0.117 4.117 23 C -0.145 4.145 24 C 0.013 3.987 25 N -0.301 5.301 26 C 0.322 3.678 27 O -0.383 6.383 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.147 0.853 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.083 0.917 38 H 0.147 0.853 39 H 0.130 0.870 40 H 0.150 0.850 41 H 0.141 0.859 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 1.179 -1.233 -18.967 19.044 hybrid contribution 0.749 -1.215 0.326 1.464 sum 1.928 -2.449 -18.641 18.900 Atomic orbital electron populations 1.21655 0.90417 1.02879 1.03372 1.20108 0.98219 0.96697 0.90708 1.21649 1.01314 0.91965 1.03368 1.19598 1.01883 0.97058 0.93773 1.20249 0.99695 0.99594 0.89894 1.18711 0.95873 0.93994 0.92484 1.18107 1.07697 1.00187 0.90051 1.20694 0.96749 0.96035 0.94018 1.20150 1.06607 1.02488 0.91925 1.19501 0.92187 0.92734 0.85169 1.83952 1.67977 1.44087 1.11057 1.21347 1.33640 1.04096 0.87758 0.88824 1.25340 0.96640 0.98168 0.96334 1.70027 1.36627 1.29610 1.12755 0.85749 0.79307 0.79638 0.78606 1.19363 1.20167 1.19360 1.21100 1.06900 1.02104 0.95346 1.20803 0.96690 0.96997 0.92548 1.20946 0.99045 0.97961 0.93777 1.20221 1.02573 0.99506 0.92245 1.18084 1.00499 0.97815 0.82256 1.43621 1.51067 1.29476 1.05914 1.20561 0.77200 0.80383 0.89629 1.90773 1.59328 1.70073 1.18117 0.90665 0.91253 0.92126 0.92127 0.91257 0.90662 0.85305 0.86660 0.86229 0.91715 0.85282 0.87049 0.85017 0.85944 0.75267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 8.63 37.16 0.32 -0.82 16 2 C -0.05 -0.56 1.01 -156.25 -0.16 -0.71 16 3 C -0.13 -1.14 8.64 37.15 0.32 -0.81 16 4 C -0.12 -1.35 4.98 -104.39 -0.52 -1.87 16 5 C -0.08 -0.91 9.41 -39.39 -0.37 -1.28 16 6 C -0.01 -0.13 5.88 -104.82 -0.62 -0.75 16 7 C -0.16 -2.55 5.88 -104.86 -0.62 -3.16 16 8 C -0.06 -0.93 9.42 -39.28 -0.37 -1.30 16 9 C -0.19 -3.77 9.98 -39.45 -0.39 -4.17 16 10 C 0.16 3.61 6.65 -39.01 -0.26 3.35 16 11 O -0.17 -4.57 9.75 0.26 0.00 -4.57 16 12 C -0.39 -10.42 9.48 30.88 0.29 -10.13 16 13 H 0.09 2.27 5.19 -52.48 -0.27 2.00 16 14 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 15 N -0.86 -24.11 13.67 55.48 0.76 -23.35 16 16 Si 0.94 19.54 29.55 -169.99 -5.02 14.52 16 17 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 18 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 20 C -0.24 -4.74 9.15 -39.44 -0.36 -5.10 16 21 C -0.05 -0.88 9.42 -39.27 -0.37 -1.25 16 22 C -0.10 -1.16 9.40 -39.34 -0.37 -1.53 16 23 C -0.12 -1.28 10.06 -39.31 -0.40 -1.68 16 24 C 0.11 1.19 7.11 -83.60 -0.59 0.60 16 25 N -0.66 -6.65 5.88 -9.65 -0.06 -6.70 16 26 C 0.53 6.33 7.37 -10.84 -0.08 6.25 16 27 O -0.51 -7.36 18.03 5.54 0.10 -7.26 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.13 1.37 6.22 -52.49 -0.33 1.05 16 35 H 0.12 1.52 6.21 -52.48 -0.33 1.20 16 36 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 37 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.13 2.59 5.62 -52.49 -0.30 2.29 16 39 H 0.11 1.53 6.20 -52.49 -0.33 1.21 16 40 H 0.13 1.37 6.20 -52.49 -0.33 1.05 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.41 3.19 8.96 -40.82 -0.37 2.82 16 LS Contribution 354.07 15.07 5.34 5.34 Total: -1.00 -30.70 354.07 -8.27 -38.97 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -4.75 Total: 6.44 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -4.64 Total: -23.38 kcal Atomic # 7 Polarization: -30.76 SS G_CDS: 0.70 Total: -30.06 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.10 Total: -11.83 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.70 -8.27 -38.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.272 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds