Wall clock time and date at job start Tue Mar 31 2020 13:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 110.45602 * 2 1 4 4 C 1.51164 * 110.50982 * 122.60948 * 2 1 3 5 5 C 1.37433 * 132.73525 * 298.92083 * 4 2 1 6 6 C 1.39546 * 119.81202 * 180.12046 * 5 4 2 7 7 C 1.48282 * 120.21754 * 179.81293 * 6 5 4 8 8 C 1.39461 * 120.05604 * 359.50363 * 7 6 5 9 9 C 1.37826 * 119.94499 * 179.81202 * 8 7 6 10 10 C 1.39001 * 120.05911 * 0.44848 * 9 8 7 11 11 O 1.35695 * 119.95030 * 179.76369 * 10 9 8 12 12 C 1.34814 * 117.00393 * 174.47157 * 11 10 9 13 13 H 1.08007 * 119.99530 * 5.06322 * 12 11 10 14 14 C 1.38637 * 120.00465 * 185.05434 * 12 11 10 15 15 N 1.31566 * 119.99695 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00094 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47165 * 60.00210 * 16 14 12 18 18 H 1.48504 * 109.47199 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47225 * 300.00158 * 16 14 12 20 20 C 1.39009 * 120.10580 * 359.78731 * 10 9 8 21 21 C 1.37838 * 120.05324 * 359.97438 * 20 10 9 22 22 C 1.39460 * 119.56248 * 359.59745 * 6 5 4 23 23 C 1.37660 * 120.24875 * 0.18703 * 22 6 5 24 24 C 1.39035 * 106.32805 * 118.64400 * 4 2 1 25 25 N 1.39490 * 110.18981 * 359.97438 * 24 4 2 26 26 C 1.34343 * 112.28748 * 0.02562 * 25 24 4 27 27 O 1.21295 * 126.43281 * 179.97438 * 26 25 24 28 28 H 1.08996 * 109.47394 * 297.39064 * 1 2 3 29 29 H 1.09008 * 109.47128 * 57.39124 * 1 2 3 30 30 H 1.09002 * 109.47423 * 177.39048 * 1 2 3 31 31 H 1.09002 * 109.47124 * 182.60865 * 3 2 1 32 32 H 1.09004 * 109.47383 * 302.60494 * 3 2 1 33 33 H 1.09003 * 109.47317 * 62.60858 * 3 2 1 34 34 H 1.07994 * 120.09650 * 359.97438 * 5 4 2 35 35 H 1.08007 * 120.02038 * 0.02562 * 8 7 6 36 36 H 1.08000 * 119.97243 * 180.21250 * 9 8 7 37 37 H 0.96995 * 119.99933 * 179.97438 * 15 14 12 38 38 H 1.07992 * 119.97335 * 179.97438 * 20 10 9 39 39 H 1.07996 * 120.02331 * 180.02562 * 21 20 10 40 40 H 1.08002 * 119.87158 * 180.21212 * 22 6 5 41 41 H 1.07998 * 119.85549 * 180.02562 * 23 22 6 42 42 H 0.97007 * 123.85368 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0647 1.4335 0.0000 4 6 2.0597 -0.7630 1.1926 5 6 1.9292 -0.5816 2.5487 6 6 2.5492 -1.4683 3.4300 7 6 2.4178 -1.2787 4.8948 8 6 1.6816 -0.2060 5.3970 9 6 1.5577 -0.0342 6.7589 10 6 2.1736 -0.9236 7.6317 11 8 2.0542 -0.7496 8.9722 12 6 2.5771 -1.7081 9.7629 13 1 3.1348 -2.5235 9.3262 14 6 2.3992 -1.6472 11.1364 15 7 1.7195 -0.6541 11.6683 16 14 3.1244 -2.9751 12.2320 17 1 4.5993 -3.0059 12.0624 18 1 2.7947 -2.6816 13.6499 19 1 2.5551 -4.2937 11.8546 20 6 2.9120 -1.9908 7.1337 21 6 3.0348 -2.1697 5.7725 22 6 3.2894 -2.5365 2.9241 23 6 3.4113 -2.7134 1.5644 24 6 2.7957 -1.8259 0.6812 25 7 2.7751 -1.7989 -0.7133 26 6 2.0602 -0.7674 -1.1924 27 8 1.8745 -0.5007 -2.3610 28 1 -0.3634 0.4728 0.9124 29 1 -0.3634 0.5538 -0.8657 30 1 -0.3634 -1.0266 -0.0468 31 1 3.1536 1.4151 -0.0468 32 1 1.6729 1.9675 -0.8657 33 1 1.7487 1.9392 0.9125 34 1 1.3505 0.2460 2.9312 35 1 1.2061 0.4875 4.7192 36 1 0.9849 0.7944 7.1483 37 1 1.5947 -0.6117 12.6292 38 1 3.3899 -2.6803 7.8137 39 1 3.6082 -2.9993 5.3860 40 1 3.7685 -3.2277 3.6017 41 1 3.9857 -3.5430 1.1795 42 1 3.2262 -2.4502 -1.2731 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243592646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:46 Heat of formation + Delta-G solvation = -26.403230 kcal Electronic energy + Delta-G solvation = -25566.955482 eV Core-core repulsion = 21862.599127 eV Total energy + Delta-G solvation = -3704.356355 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.76381 -40.82614 -39.63451 -38.26401 -36.53785 -35.65626 -34.28977 -32.15967 -31.96204 -30.78697 -28.57633 -28.33791 -27.23217 -26.08459 -24.12722 -23.83439 -22.31658 -21.73472 -20.59090 -19.85216 -18.92437 -18.69308 -18.00060 -17.11157 -16.66278 -16.31909 -16.25312 -15.89303 -15.53743 -15.43038 -15.23181 -15.06533 -14.78255 -14.42588 -14.36512 -14.07842 -13.79613 -13.59264 -13.50276 -13.27762 -13.20052 -13.03672 -12.99870 -12.64011 -12.39786 -12.33379 -12.16931 -12.13903 -11.75131 -11.58381 -11.11828 -11.01217 -10.78252 -9.84292 -9.79031 -9.55204 -8.46579 -8.29509 -6.12664 -0.18366 0.41700 0.63700 0.87101 1.37356 1.43010 1.52641 1.53378 1.97377 2.19067 2.68880 2.99422 3.00900 3.22524 3.31004 3.52115 3.79488 3.90157 3.96803 4.02371 4.11680 4.18661 4.30365 4.43619 4.50597 4.66413 4.70878 4.71098 4.76742 4.79775 4.81718 4.97421 5.06176 5.07626 5.12963 5.20913 5.21413 5.28693 5.34221 5.47184 5.57052 5.63857 5.72168 5.77723 5.93183 6.03603 6.04171 6.21159 6.90664 6.98440 7.78537 8.76294 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.031784 B = 0.002333 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.729055 B =12001.012493 C =12686.783877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.053 4.053 3 C -0.125 4.125 4 C -0.128 4.128 5 C -0.068 4.068 6 C -0.040 4.040 7 C -0.128 4.128 8 C -0.055 4.055 9 C -0.202 4.202 10 C 0.117 3.883 11 O -0.228 6.228 12 C -0.413 4.413 13 H 0.105 0.895 14 C -0.022 4.022 15 N -0.919 5.919 16 Si 1.017 2.983 17 H -0.256 1.256 18 H -0.274 1.274 19 H -0.257 1.257 20 C -0.242 4.242 21 C -0.056 4.056 22 C -0.092 4.092 23 C -0.121 4.121 24 C 0.116 3.884 25 N -0.649 5.649 26 C 0.531 3.469 27 O -0.538 6.538 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.142 0.858 35 H 0.153 0.847 36 H 0.116 0.884 37 H 0.273 0.727 38 H 0.123 0.877 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.153 0.847 42 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.492 -3.215 -22.006 22.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.057 4.057 3 C -0.183 4.183 4 C -0.130 4.130 5 C -0.086 4.086 6 C -0.041 4.041 7 C -0.129 4.129 8 C -0.073 4.073 9 C -0.221 4.221 10 C 0.066 3.934 11 O -0.134 6.134 12 C -0.489 4.489 13 H 0.122 0.878 14 C -0.220 4.220 15 N -0.557 5.557 16 Si 0.837 3.163 17 H -0.181 1.181 18 H -0.198 1.198 19 H -0.181 1.181 20 C -0.261 4.261 21 C -0.073 4.073 22 C -0.110 4.110 23 C -0.141 4.141 24 C 0.020 3.980 25 N -0.292 5.292 26 C 0.319 3.681 27 O -0.415 6.415 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.160 0.840 35 H 0.171 0.829 36 H 0.134 0.866 37 H 0.082 0.918 38 H 0.140 0.860 39 H 0.166 0.834 40 H 0.165 0.835 41 H 0.170 0.830 42 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 2.157 -2.721 -22.328 22.597 hybrid contribution 0.467 -0.758 0.664 1.110 sum 2.625 -3.479 -21.665 22.099 Atomic orbital electron populations 1.21683 0.89464 1.02815 1.04323 1.20165 0.98965 0.97055 0.89486 1.21678 1.00970 0.91287 1.04322 1.19675 1.02135 0.97456 0.93763 1.20343 0.98920 0.99374 0.89963 1.18598 0.98634 0.96093 0.90752 1.18502 1.04280 0.98275 0.91796 1.21090 0.96407 0.96818 0.92943 1.20400 1.06480 1.02054 0.93193 1.20067 0.94097 0.94813 0.84442 1.83925 1.70999 1.45568 1.12947 1.21811 1.33980 1.04634 0.88473 0.87804 1.26583 0.97115 1.00665 0.97651 1.70177 1.40057 1.32554 1.12920 0.84662 0.78882 0.76601 0.76201 1.18073 1.19848 1.18119 1.21215 1.06570 1.01324 0.96972 1.21161 0.96859 0.98257 0.91058 1.21166 0.97915 0.97252 0.94695 1.20478 1.02168 0.99982 0.91500 1.18320 0.99638 0.97566 0.82526 1.43587 1.50473 1.29303 1.05868 1.20837 0.77016 0.80668 0.89569 1.90762 1.60476 1.70900 1.19395 0.89231 0.90933 0.92643 0.92625 0.90937 0.89223 0.84014 0.82916 0.86552 0.91824 0.85962 0.83431 0.83535 0.82957 0.73920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.63 71.98 0.62 -1.28 16 2 C -0.05 -0.93 1.01 -53.31 -0.05 -0.99 16 3 C -0.13 -1.89 8.64 71.98 0.62 -1.27 16 4 C -0.13 -2.37 4.98 -19.72 -0.10 -2.47 16 5 C -0.07 -1.33 9.41 22.40 0.21 -1.12 16 6 C -0.04 -0.90 5.88 -19.99 -0.12 -1.02 16 7 C -0.13 -3.69 5.88 -20.02 -0.12 -3.81 16 8 C -0.05 -1.68 9.42 22.47 0.21 -1.47 16 9 C -0.20 -8.06 9.98 22.36 0.22 -7.84 16 10 C 0.12 5.53 6.65 22.64 0.15 5.68 16 11 O -0.23 -13.29 9.75 -21.97 -0.21 -13.50 16 12 C -0.41 -23.26 9.48 67.92 0.64 -22.62 16 13 H 0.10 5.30 5.19 -2.91 -0.02 5.28 16 14 C -0.02 -1.24 5.49 84.83 0.47 -0.77 16 15 N -0.92 -55.28 13.67 21.61 0.30 -54.98 16 16 Si 1.02 41.51 29.55 68.60 2.03 43.53 16 17 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 19 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 20 C -0.24 -9.83 9.15 22.36 0.20 -9.62 16 21 C -0.06 -1.74 9.42 22.47 0.21 -1.53 16 22 C -0.09 -1.71 9.40 22.43 0.21 -1.50 16 23 C -0.12 -1.88 10.06 22.44 0.23 -1.66 16 24 C 0.12 2.04 7.11 38.42 0.27 2.31 16 25 N -0.65 -10.90 5.88 -303.06 -1.78 -12.68 16 26 C 0.53 11.17 7.37 87.94 0.65 11.82 16 27 O -0.54 -14.62 18.03 -3.08 -0.06 -14.68 16 28 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.14 2.36 6.22 -2.91 -0.02 2.34 16 35 H 0.15 3.47 6.21 -2.91 -0.02 3.45 16 36 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 37 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.12 5.03 5.62 -2.91 -0.02 5.02 16 39 H 0.15 3.49 6.20 -2.91 -0.02 3.47 16 40 H 0.15 2.28 6.20 -2.91 -0.02 2.26 16 41 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 42 H 0.42 5.12 8.96 -92.70 -0.83 4.29 16 Total: -1.00 -72.40 354.07 5.06 -67.34 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.25 Total: 24.11 kcal Atomic # 6 Polarization: -43.68 SS G_CDS: 4.54 Total: -39.14 kcal Atomic # 7 Polarization: -66.18 SS G_CDS: -1.49 Total: -67.67 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.27 Total: -28.18 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Total: -72.40 5.06 -67.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.939 kcal (2) G-P(sol) polarization free energy of solvation -72.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds