Wall clock time and date at job start Tue Mar 31 2020 13:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 110.45889 * 2 1 4 4 C 1.51404 * 110.51299 * 237.24460 * 2 1 3 5 5 O 1.21289 * 126.46555 * 61.37627 * 4 2 1 6 6 N 1.34387 * 107.06617 * 240.82038 * 4 2 1 7 7 C 1.39570 * 112.23992 * 0.64431 * 6 4 2 8 8 C 1.39483 * 130.75303 * 179.24766 * 7 6 4 9 9 C 1.38018 * 120.39926 * 180.02562 * 8 7 6 10 10 C 1.38082 * 120.52056 * 359.97438 * 9 8 7 11 11 C 1.39534 * 119.67737 * 0.02562 * 10 9 8 12 12 C 1.48327 * 120.16681 * 179.97438 * 11 10 9 13 13 C 1.39430 * 120.05362 * 239.98007 * 12 11 10 14 14 C 1.37841 * 119.94985 * 179.97438 * 13 12 11 15 15 C 1.38997 * 120.05114 * 359.97438 * 14 13 12 16 16 O 1.35696 * 119.94994 * 179.97438 * 15 14 13 17 17 C 1.34823 * 116.99875 * 353.26765 * 16 15 14 18 18 H 1.08004 * 119.99518 * 354.30867 * 17 16 15 19 19 C 1.38643 * 119.99984 * 174.31709 * 17 16 15 20 20 N 1.31555 * 120.00081 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00052 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47433 * 89.99334 * 21 19 17 23 23 H 1.48499 * 109.47400 * 209.99985 * 21 19 17 24 24 H 1.48501 * 109.46789 * 329.99732 * 21 19 17 25 25 C 1.38993 * 120.10372 * 359.97438 * 15 14 13 26 26 C 1.37844 * 120.05488 * 0.04309 * 25 15 14 27 27 C 1.38676 * 110.23231 * 359.50096 * 7 6 4 28 28 H 1.08996 * 109.47131 * 320.18833 * 1 2 3 29 29 H 1.09000 * 109.47257 * 80.18005 * 1 2 3 30 30 H 1.09000 * 109.47193 * 200.18138 * 1 2 3 31 31 H 1.09000 * 109.46795 * 184.40995 * 3 2 1 32 32 H 1.09001 * 109.47555 * 304.40933 * 3 2 1 33 33 H 1.09004 * 109.47039 * 64.40845 * 3 2 1 34 34 H 0.97001 * 123.87473 * 179.91494 * 6 4 2 35 35 H 1.07994 * 119.80166 * 0.04231 * 8 7 6 36 36 H 1.08000 * 119.74284 * 179.97438 * 9 8 7 37 37 H 1.07998 * 120.15972 * 180.02562 * 10 9 8 38 38 H 1.08007 * 120.02534 * 0.25465 * 13 12 11 39 39 H 1.08005 * 119.97435 * 180.02562 * 14 13 12 40 40 H 0.97000 * 119.99924 * 179.97438 * 20 19 17 41 41 H 1.08004 * 119.97460 * 180.02562 * 25 15 14 42 42 H 1.07992 * 120.02742 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0648 1.4335 0.0000 4 6 2.0606 -0.7672 -1.1926 5 8 1.8755 -0.5011 -2.3613 6 7 2.7854 -1.7916 -0.7117 7 6 2.7988 -1.8202 0.6836 8 6 3.4078 -2.7081 1.5703 9 6 3.2795 -2.5322 2.9332 10 6 2.5478 -1.4756 3.4381 11 6 1.9334 -0.5798 2.5623 12 6 1.1443 0.5587 3.0928 13 6 -0.2077 0.6798 2.7744 14 6 -0.9390 1.7383 3.2690 15 6 -0.3298 2.6844 4.0850 16 8 -1.0516 3.7260 4.5703 17 6 -2.3126 3.8625 4.1133 18 1 -2.6747 3.2169 3.3267 19 6 -3.1444 4.8315 4.6528 20 7 -2.7034 5.6176 5.6111 21 14 -4.8914 5.0212 4.0191 22 1 -5.8015 4.1539 4.8094 23 1 -5.3160 6.4377 4.1544 24 1 -4.9453 4.6226 2.5896 25 6 1.0176 2.5653 4.4046 26 6 1.7532 1.5086 3.9121 27 6 2.0596 -0.7628 1.1921 28 1 -0.3633 0.7894 0.6580 29 1 -0.3634 0.1753 -1.0126 30 1 -0.3633 -0.9646 0.3545 31 1 3.1518 1.4157 -0.0790 32 1 1.6477 1.9770 -0.8478 33 1 1.7759 1.9291 0.9269 34 1 3.2379 -2.4429 -1.2703 35 1 3.9833 -3.5382 1.1882 36 1 3.7551 -3.2263 3.6102 37 1 2.4516 -1.3432 4.5056 38 1 -0.6827 -0.0578 2.1444 39 1 -1.9865 1.8323 3.0230 40 1 -3.2852 6.2958 5.9884 41 1 1.4888 3.3013 5.0391 42 1 2.8002 1.4167 4.1603 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243593204.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:49 Heat of formation + Delta-G solvation = -19.646692 kcal Electronic energy + Delta-G solvation = -26752.408958 eV Core-core repulsion = 23048.345589 eV Total energy + Delta-G solvation = -3704.063369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.85034 -40.76043 -39.58279 -38.19822 -36.73003 -35.64656 -34.27350 -32.33463 -31.87293 -30.02791 -29.25695 -28.46233 -27.35820 -25.76677 -23.95044 -23.64813 -22.62071 -22.03118 -20.46484 -19.79907 -19.04829 -18.43826 -17.95616 -16.99110 -16.69132 -16.35246 -16.24710 -15.97825 -15.74164 -15.46336 -15.33169 -15.06576 -14.89901 -14.50883 -14.37902 -14.11857 -13.75563 -13.63860 -13.51007 -13.27929 -13.07652 -12.93759 -12.81179 -12.43845 -12.41695 -12.35134 -12.22310 -12.11142 -11.78633 -11.54913 -11.18748 -11.02739 -10.76978 -9.77418 -9.74119 -9.06504 -8.72873 -8.46205 -6.13107 0.14710 0.24430 0.62783 0.82344 1.36775 1.37719 1.45331 1.53296 1.95766 2.18514 2.76644 2.89202 3.01474 3.18864 3.29154 3.52713 3.72249 3.92858 3.97336 4.11860 4.18819 4.23424 4.36644 4.47547 4.56696 4.58333 4.65316 4.70971 4.72646 4.75673 4.82329 4.90944 5.07184 5.10318 5.13924 5.14905 5.18732 5.29093 5.49796 5.52782 5.58462 5.67059 5.72808 5.78484 5.82220 6.04051 6.08807 6.20094 6.90448 6.99200 7.79733 8.76780 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.003420 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.256576 B = 8185.989060 C = 9171.700455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.050 4.050 3 C -0.123 4.123 4 C 0.535 3.465 5 O -0.537 6.537 6 N -0.647 5.647 7 C 0.129 3.871 8 C -0.132 4.132 9 C -0.076 4.076 10 C -0.132 4.132 11 C 0.022 3.978 12 C -0.129 4.129 13 C -0.053 4.053 14 C -0.240 4.240 15 C 0.121 3.879 16 O -0.229 6.229 17 C -0.410 4.410 18 H 0.102 0.898 19 C -0.020 4.020 20 N -0.919 5.919 21 Si 1.014 2.986 22 H -0.263 1.263 23 H -0.273 1.273 24 H -0.254 1.254 25 C -0.201 4.201 26 C -0.046 4.046 27 C -0.135 4.135 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.424 0.576 35 H 0.155 0.845 36 H 0.164 0.836 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.119 0.881 40 H 0.272 0.728 41 H 0.115 0.885 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.066 -18.700 -7.755 23.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.054 4.054 3 C -0.181 4.181 4 C 0.323 3.677 5 O -0.413 6.413 6 N -0.291 5.291 7 C 0.033 3.967 8 C -0.153 4.153 9 C -0.094 4.094 10 C -0.151 4.151 11 C 0.021 3.979 12 C -0.129 4.129 13 C -0.071 4.071 14 C -0.259 4.259 15 C 0.070 3.930 16 O -0.135 6.135 17 C -0.486 4.486 18 H 0.119 0.881 19 C -0.218 4.218 20 N -0.557 5.557 21 Si 0.834 3.166 22 H -0.188 1.188 23 H -0.197 1.197 24 H -0.177 1.177 25 C -0.220 4.220 26 C -0.064 4.064 27 C -0.138 4.138 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.264 0.736 35 H 0.173 0.827 36 H 0.182 0.818 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.137 0.863 40 H 0.081 0.919 41 H 0.134 0.866 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 11.896 -18.112 -8.134 23.146 hybrid contribution -0.786 0.402 -0.365 0.955 sum 11.110 -17.710 -8.498 22.568 Atomic orbital electron populations 1.22128 0.90740 1.03539 1.03267 1.20003 0.98258 0.96569 0.90540 1.21609 1.00983 0.92259 1.03211 1.20689 0.77073 0.80695 0.89270 1.90756 1.60615 1.70675 1.19295 1.43534 1.50020 1.29536 1.05961 1.18225 0.98981 0.97020 0.82467 1.20723 1.02539 0.99837 0.92154 1.21169 0.96698 0.97086 0.94426 1.21453 0.98671 0.94895 1.00066 1.17854 0.95957 0.93926 0.90125 1.18419 0.93375 0.97438 1.03712 1.21215 0.93378 0.96042 0.96484 1.21140 1.01048 0.98143 1.05543 1.20004 0.92417 0.87588 0.92950 1.83941 1.26207 1.42159 1.61225 1.21786 0.86841 1.19905 1.20086 0.88072 1.26513 1.04374 0.94844 0.96080 1.70174 1.38583 1.20347 1.26579 0.84646 0.74571 0.78271 0.79159 1.18803 1.19744 1.17720 1.20359 0.91297 1.02662 1.07662 1.20952 0.99478 0.91608 0.94381 1.19720 1.03078 0.97857 0.93103 0.89959 0.91808 0.91100 0.91977 0.91740 0.91217 0.73599 0.82693 0.81805 0.84264 0.84351 0.86310 0.91864 0.86643 0.83496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 7.16 71.98 0.52 -2.98 16 2 C -0.05 -1.26 0.84 -53.32 -0.04 -1.30 16 3 C -0.12 -3.22 8.51 71.98 0.61 -2.61 16 4 C 0.53 13.60 7.32 87.94 0.64 14.24 16 5 O -0.54 -16.99 18.01 -3.06 -0.06 -17.04 16 6 N -0.65 -12.04 5.88 -303.23 -1.78 -13.82 16 7 C 0.13 2.38 7.11 38.31 0.27 2.66 16 8 C -0.13 -1.70 10.07 22.52 0.23 -1.48 16 9 C -0.08 -0.95 10.00 22.18 0.22 -0.73 16 10 C -0.13 -2.38 9.70 22.55 0.22 -2.16 16 11 C 0.02 0.51 5.35 -20.14 -0.11 0.40 16 12 C -0.13 -3.76 4.09 -20.02 -0.08 -3.84 16 13 C -0.05 -1.74 7.04 22.46 0.16 -1.58 16 14 C -0.24 -9.86 9.11 22.36 0.20 -9.66 16 15 C 0.12 5.73 6.65 22.63 0.15 5.88 16 16 O -0.23 -13.37 9.75 -22.07 -0.22 -13.58 16 17 C -0.41 -23.29 9.43 67.92 0.64 -22.65 16 18 H 0.10 5.26 5.31 -2.91 -0.02 5.25 16 19 C -0.02 -1.13 5.49 84.83 0.47 -0.67 16 20 N -0.92 -55.57 13.67 21.61 0.30 -55.28 16 21 Si 1.01 42.27 29.55 68.60 2.03 44.29 16 22 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 24 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 25 C -0.20 -8.00 9.98 22.36 0.22 -7.77 16 26 C -0.05 -1.43 9.66 22.46 0.22 -1.22 16 27 C -0.13 -3.08 4.71 -19.49 -0.09 -3.17 16 28 H 0.08 2.24 5.04 -2.39 -0.01 2.22 16 29 H 0.06 1.60 8.03 -2.39 -0.02 1.58 16 30 H 0.07 1.61 7.52 -2.39 -0.02 1.59 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 2.00 7.01 -2.38 -0.02 1.98 16 34 H 0.42 5.48 8.96 -92.71 -0.83 4.65 16 35 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 36 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 37 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 38 H 0.14 3.88 5.54 -2.91 -0.02 3.87 16 39 H 0.12 5.03 5.72 -2.91 -0.02 5.02 16 40 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 42 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -72.18 348.42 4.96 -67.22 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.25 Total: 26.83 kcal Atomic # 6 Polarization: -43.06 SS G_CDS: 4.44 Total: -38.62 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -1.49 Total: -69.10 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.27 Total: -30.62 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -72.18 4.96 -67.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243593204.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.575 kcal (2) G-P(sol) polarization free energy of solvation -72.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds