Wall clock time and date at job start Tue Mar 31 2020 13:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37870 * 119.96419 * 2 1 4 4 C 1.39424 * 119.95769 * 180.02562 * 3 2 1 5 5 C 1.48283 * 120.06171 * 179.97438 * 4 3 2 6 6 C 1.39454 * 120.05721 * 179.74368 * 5 4 3 7 7 C 1.37832 * 119.94607 * 179.77114 * 6 5 4 8 8 C 1.38997 * 120.05521 * 0.52901 * 7 6 5 9 9 O 1.35703 * 119.94849 * 179.72514 * 8 7 6 10 10 C 1.34811 * 116.99958 * 174.43533 * 9 8 7 11 11 H 1.07997 * 120.00395 * 5.04778 * 10 9 8 12 12 C 1.38644 * 119.99515 * 185.05782 * 10 9 8 13 13 N 1.31564 * 120.00161 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99778 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47150 * 59.99788 * 14 12 10 16 16 H 1.48499 * 109.47244 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46870 * 299.99865 * 14 12 10 18 18 C 1.39002 * 120.10890 * 359.70228 * 8 7 6 19 19 C 1.37841 * 120.05398 * 0.04541 * 18 8 7 20 20 C 1.39471 * 119.88050 * 359.97438 * 4 3 2 21 21 C 1.37806 * 119.93375 * 0.02562 * 20 4 3 22 22 C 1.38972 * 119.96765 * 180.02562 * 2 1 3 23 23 N 1.39784 * 120.05417 * 359.97438 * 22 2 1 24 24 C 1.34532 * 120.48577 * 198.57147 * 23 22 2 25 25 O 1.21293 * 119.60732 * 180.79197 * 24 23 22 26 26 C 1.50500 * 120.78812 * 0.76727 * 24 23 22 27 27 C 1.50684 * 120.08285 * 179.97438 * 21 20 4 28 28 H 1.09007 * 109.46976 * 90.00280 * 1 2 3 29 29 H 1.09000 * 109.46930 * 209.99896 * 1 2 3 30 30 H 1.08998 * 109.46893 * 330.00270 * 1 2 3 31 31 H 1.07994 * 120.02511 * 0.03706 * 3 2 1 32 32 H 1.08007 * 120.02575 * 0.02562 * 6 5 4 33 33 H 1.08007 * 119.97195 * 180.25932 * 7 6 5 34 34 H 0.97007 * 119.99770 * 180.02562 * 13 12 10 35 35 H 1.07995 * 119.97569 * 180.02562 * 18 8 7 36 36 H 1.07993 * 120.02633 * 179.97438 * 19 18 8 37 37 H 1.07997 * 120.03147 * 179.97438 * 20 4 3 38 38 H 0.97005 * 119.75163 * 18.57245 * 23 22 2 39 39 H 1.08999 * 109.39914 * 204.65813 * 26 24 23 40 40 H 1.08999 * 109.39655 * 84.91842 * 26 24 23 41 41 H 1.09000 * 109.46210 * 26.04587 * 27 21 20 42 42 H 1.09006 * 109.45553 * 266.07544 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1944 0.0000 4 6 3.5899 1.1943 -0.0005 5 6 4.3328 2.4775 -0.0011 6 6 5.7274 2.4773 0.0037 7 6 6.4157 3.6714 -0.0016 8 6 5.7210 4.8754 -0.0007 9 8 6.4008 6.0498 -0.0003 10 6 5.6727 7.1785 -0.1159 11 1 4.5940 7.1271 -0.1213 12 6 6.3089 8.4052 -0.2280 13 7 7.6230 8.4679 -0.2211 14 14 5.3000 9.9692 -0.3889 15 1 4.4316 10.1232 0.8058 16 1 6.2109 11.1374 -0.4921 17 1 4.4555 9.8902 -1.6078 18 6 4.3309 4.8783 -0.0006 19 6 3.6381 3.6867 -0.0006 20 6 4.2846 -0.0151 -0.0005 21 6 3.5916 -1.2062 -0.0005 22 6 2.2012 -1.2039 -0.0005 23 7 1.5028 -2.4148 -0.0005 24 6 2.1138 -3.5552 0.3682 25 8 1.4967 -4.5992 0.3485 26 6 3.5542 -3.5511 0.8044 27 6 4.3387 -2.5148 -0.0011 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6555 2.1296 0.0006 32 1 6.2676 1.5421 0.0075 33 1 7.4957 3.6717 -0.0020 34 1 8.0680 9.3263 -0.2992 35 1 3.7934 5.8150 -0.0003 36 1 2.5581 3.6896 -0.0001 37 1 5.3646 -0.0181 -0.0014 38 1 0.5706 -2.4328 -0.2684 39 1 3.9849 -4.5389 0.6404 40 1 3.6107 -3.3043 1.8646 41 1 5.3208 -2.3725 0.4498 42 1 4.4572 -2.8648 -1.0266 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243593729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:46 Heat of formation + Delta-G solvation = -26.456742 kcal Electronic energy + Delta-G solvation = -25435.570032 eV Core-core repulsion = 21731.211356 eV Total energy + Delta-G solvation = -3704.358675 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.18422 -39.40666 -38.68531 -36.81993 -35.15854 -34.73346 -32.49730 -31.73650 -30.70303 -30.08434 -27.92773 -26.80224 -25.49513 -24.85216 -23.14524 -22.30129 -21.49980 -20.43699 -19.01723 -18.33221 -17.78293 -17.41251 -17.02410 -16.19749 -15.52167 -15.09699 -14.88993 -14.56033 -14.23945 -14.13557 -14.07391 -14.01138 -13.74086 -13.49363 -13.12488 -13.12248 -12.75184 -12.62015 -12.38877 -12.22418 -11.97499 -11.81123 -11.74478 -11.50700 -11.22801 -11.09285 -10.78065 -10.64205 -10.48931 -10.48405 -10.21887 -9.44653 -9.00114 -8.71547 -8.33816 -8.26026 -6.94275 -6.58259 -4.14747 0.90634 1.28116 2.09069 2.12768 2.58262 2.86748 3.06114 3.07277 3.10170 3.74785 3.86532 4.14936 4.40087 4.50278 4.56906 4.66684 4.81166 4.88144 4.98224 5.09893 5.11257 5.20503 5.27994 5.34764 5.37123 5.43124 5.48262 5.55184 5.59953 5.70012 5.87935 5.98486 6.00804 6.06846 6.23704 6.27112 6.52891 6.55327 6.58626 6.75208 6.80779 6.95135 7.05140 7.17490 7.26878 7.31739 7.67452 7.77160 7.86443 8.86674 9.54566 10.58772 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.030071 B = 0.002328 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.892225 B =12025.577755 C =12905.837973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.106 4.106 3 C -0.104 4.104 4 C -0.007 4.007 5 C -0.161 4.161 6 C -0.057 4.057 7 C -0.193 4.193 8 C 0.159 3.841 9 O -0.169 6.169 10 C -0.393 4.393 11 H 0.094 0.906 12 C 0.041 3.959 13 N -0.857 5.857 14 Si 0.943 3.057 15 H -0.269 1.269 16 H -0.277 1.277 17 H -0.269 1.269 18 C -0.235 4.235 19 C -0.052 4.052 20 C -0.102 4.102 21 C -0.109 4.109 22 C 0.126 3.874 23 N -0.658 5.658 24 C 0.520 3.480 25 O -0.540 6.540 26 C -0.137 4.137 27 C -0.076 4.076 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.129 0.871 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.273 0.727 35 H 0.129 0.871 36 H 0.111 0.889 37 H 0.130 0.870 38 H 0.408 0.592 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.294 -16.672 0.578 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.108 4.108 3 C -0.123 4.123 4 C -0.008 4.008 5 C -0.162 4.162 6 C -0.075 4.075 7 C -0.212 4.212 8 C 0.104 3.896 9 O -0.071 6.071 10 C -0.469 4.469 11 H 0.112 0.888 12 C -0.165 4.165 13 N -0.490 5.490 14 Si 0.767 3.233 15 H -0.194 1.194 16 H -0.202 1.202 17 H -0.194 1.194 18 C -0.255 4.255 19 C -0.071 4.071 20 C -0.120 4.120 21 C -0.112 4.112 22 C 0.031 3.969 23 N -0.303 5.303 24 C 0.309 3.691 25 O -0.417 6.417 26 C -0.177 4.177 27 C -0.113 4.113 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.147 0.853 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.083 0.917 35 H 0.147 0.853 36 H 0.129 0.871 37 H 0.148 0.852 38 H 0.246 0.754 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.110 0.890 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.999 -17.047 0.638 19.287 hybrid contribution -0.935 0.992 -0.192 1.377 sum -9.935 -16.056 0.446 18.886 Atomic orbital electron populations 1.20732 0.91142 1.02917 1.02385 1.19386 0.95737 0.91384 1.04302 1.20930 0.93460 0.96879 1.00990 1.18771 0.92437 0.92523 0.97052 1.18155 0.92761 0.91023 1.14216 1.20695 0.92850 0.96592 0.97353 1.20153 0.99620 0.89982 1.11458 1.19498 0.90696 0.87436 0.91967 1.83954 1.35191 1.11075 1.76878 1.21344 0.91305 0.81988 1.52214 0.88838 1.25342 0.96167 0.98738 0.96240 1.70030 1.07606 1.26690 1.44706 0.85750 0.78846 0.79384 0.79321 1.19370 1.20162 1.19358 1.21101 0.94071 0.98487 1.11801 1.20812 0.98401 0.91436 0.96409 1.20870 0.99873 0.90263 1.00994 1.19327 0.91165 0.95552 1.05138 1.17337 0.90663 0.84668 1.04191 1.43553 1.15102 1.06340 1.65305 1.20760 0.90025 0.82498 0.75799 1.90764 1.67252 1.30605 1.53035 1.21681 0.91168 1.02314 1.02554 1.20422 0.98822 0.90968 1.01120 0.91064 0.92077 0.90783 0.85339 0.86653 0.86232 0.91723 0.85296 0.87113 0.85204 0.75405 0.87528 0.87899 0.89015 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.45 36.01 0.34 -0.58 16 2 C -0.11 -1.14 5.89 -104.48 -0.62 -1.75 16 3 C -0.10 -1.27 9.07 -39.27 -0.36 -1.63 16 4 C -0.01 -0.10 5.88 -104.86 -0.62 -0.71 16 5 C -0.16 -2.61 5.88 -104.86 -0.62 -3.23 16 6 C -0.06 -0.94 9.42 -39.28 -0.37 -1.31 16 7 C -0.19 -3.81 9.98 -39.45 -0.39 -4.21 16 8 C 0.16 3.64 6.65 -39.02 -0.26 3.38 16 9 O -0.17 -4.60 9.75 0.25 0.00 -4.60 16 10 C -0.39 -10.47 9.48 30.88 0.29 -10.18 16 11 H 0.09 2.28 5.19 -52.49 -0.27 2.01 16 12 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 13 N -0.86 -24.18 13.67 55.48 0.76 -23.42 16 14 Si 0.94 19.62 29.55 -169.99 -5.02 14.59 16 15 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 16 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 17 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 18 C -0.24 -4.80 9.15 -39.44 -0.36 -5.16 16 19 C -0.05 -0.90 9.42 -39.27 -0.37 -1.27 16 20 C -0.10 -1.20 9.06 -39.28 -0.36 -1.56 16 21 C -0.11 -1.16 5.65 -104.49 -0.59 -1.76 16 22 C 0.13 1.37 6.49 -83.66 -0.54 0.83 16 23 N -0.66 -6.64 5.08 -9.95 -0.05 -6.69 16 24 C 0.52 5.74 7.72 -11.19 -0.09 5.66 16 25 O -0.54 -7.72 17.91 5.55 0.10 -7.62 16 26 C -0.14 -1.11 6.08 -28.03 -0.17 -1.28 16 27 C -0.08 -0.61 5.99 -27.94 -0.17 -0.77 16 28 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.06 0.44 6.86 -51.93 -0.36 0.08 16 30 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 31 H 0.13 1.44 6.19 -52.49 -0.32 1.12 16 32 H 0.12 1.53 6.19 -52.48 -0.32 1.21 16 33 H 0.12 2.26 8.06 -52.48 -0.42 1.84 16 34 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.13 2.61 5.62 -52.49 -0.30 2.32 16 36 H 0.11 1.58 6.19 -52.49 -0.32 1.25 16 37 H 0.13 1.35 6.19 -52.49 -0.33 1.03 16 38 H 0.41 3.59 7.21 -40.82 -0.29 3.30 16 39 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 0.58 8.06 -51.93 -0.42 0.16 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 348.75 15.07 5.26 5.26 Total: -1.00 -31.35 348.75 -8.90 -40.24 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -4.60 Total: 6.79 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -5.34 Total: -24.56 kcal Atomic # 7 Polarization: -30.81 SS G_CDS: 0.71 Total: -30.10 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.10 Total: -12.22 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.35 -8.90 -40.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243593729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.786 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds