Wall clock time and date at job start Tue Mar 31 2020 13:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37870 * 119.96419 * 2 1 4 4 C 1.39424 * 119.95769 * 180.02562 * 3 2 1 5 5 C 1.48283 * 120.06171 * 179.97438 * 4 3 2 6 6 C 1.39454 * 120.05721 * 179.74368 * 5 4 3 7 7 C 1.37832 * 119.94607 * 179.77114 * 6 5 4 8 8 C 1.38997 * 120.05521 * 0.52901 * 7 6 5 9 9 O 1.35703 * 119.94849 * 179.72514 * 8 7 6 10 10 C 1.34811 * 116.99958 * 174.43533 * 9 8 7 11 11 H 1.07997 * 120.00395 * 5.04778 * 10 9 8 12 12 C 1.38644 * 119.99515 * 185.05782 * 10 9 8 13 13 N 1.31564 * 120.00161 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99778 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47150 * 59.99788 * 14 12 10 16 16 H 1.48499 * 109.47244 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46870 * 299.99865 * 14 12 10 18 18 C 1.39002 * 120.10890 * 359.70228 * 8 7 6 19 19 C 1.37841 * 120.05398 * 0.04541 * 18 8 7 20 20 C 1.39471 * 119.88050 * 359.97438 * 4 3 2 21 21 C 1.37806 * 119.93375 * 0.02562 * 20 4 3 22 22 C 1.38972 * 119.96765 * 180.02562 * 2 1 3 23 23 N 1.39784 * 120.05417 * 359.97438 * 22 2 1 24 24 C 1.34532 * 120.48577 * 198.57147 * 23 22 2 25 25 O 1.21293 * 119.60732 * 180.79197 * 24 23 22 26 26 C 1.50500 * 120.78812 * 0.76727 * 24 23 22 27 27 C 1.50684 * 120.08285 * 179.97438 * 21 20 4 28 28 H 1.09007 * 109.46976 * 90.00280 * 1 2 3 29 29 H 1.09000 * 109.46930 * 209.99896 * 1 2 3 30 30 H 1.08998 * 109.46893 * 330.00270 * 1 2 3 31 31 H 1.07994 * 120.02511 * 0.03706 * 3 2 1 32 32 H 1.08007 * 120.02575 * 0.02562 * 6 5 4 33 33 H 1.08007 * 119.97195 * 180.25932 * 7 6 5 34 34 H 0.97007 * 119.99770 * 180.02562 * 13 12 10 35 35 H 1.07995 * 119.97569 * 180.02562 * 18 8 7 36 36 H 1.07993 * 120.02633 * 179.97438 * 19 18 8 37 37 H 1.07997 * 120.03147 * 179.97438 * 20 4 3 38 38 H 0.97005 * 119.75163 * 18.57245 * 23 22 2 39 39 H 1.08999 * 109.39914 * 204.65813 * 26 24 23 40 40 H 1.08999 * 109.39655 * 84.91842 * 26 24 23 41 41 H 1.09000 * 109.46210 * 26.04587 * 27 21 20 42 42 H 1.09006 * 109.45553 * 266.07544 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1944 0.0000 4 6 3.5899 1.1943 -0.0005 5 6 4.3328 2.4775 -0.0011 6 6 5.7274 2.4773 0.0037 7 6 6.4157 3.6714 -0.0016 8 6 5.7210 4.8754 -0.0007 9 8 6.4008 6.0498 -0.0003 10 6 5.6727 7.1785 -0.1159 11 1 4.5940 7.1271 -0.1213 12 6 6.3089 8.4052 -0.2280 13 7 7.6230 8.4679 -0.2211 14 14 5.3000 9.9692 -0.3889 15 1 4.4316 10.1232 0.8058 16 1 6.2109 11.1374 -0.4921 17 1 4.4555 9.8902 -1.6078 18 6 4.3309 4.8783 -0.0006 19 6 3.6381 3.6867 -0.0006 20 6 4.2846 -0.0151 -0.0005 21 6 3.5916 -1.2062 -0.0005 22 6 2.2012 -1.2039 -0.0005 23 7 1.5028 -2.4148 -0.0005 24 6 2.1138 -3.5552 0.3682 25 8 1.4967 -4.5992 0.3485 26 6 3.5542 -3.5511 0.8044 27 6 4.3387 -2.5148 -0.0011 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6555 2.1296 0.0006 32 1 6.2676 1.5421 0.0075 33 1 7.4957 3.6717 -0.0020 34 1 8.0680 9.3263 -0.2992 35 1 3.7934 5.8150 -0.0003 36 1 2.5581 3.6896 -0.0001 37 1 5.3646 -0.0181 -0.0014 38 1 0.5706 -2.4328 -0.2684 39 1 3.9849 -4.5389 0.6404 40 1 3.6107 -3.3043 1.8646 41 1 5.3208 -2.3725 0.4498 42 1 4.4572 -2.8648 -1.0266 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243593729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:45 Heat of formation + Delta-G solvation = -44.385034 kcal Electronic energy + Delta-G solvation = -25436.347461 eV Core-core repulsion = 21731.211356 eV Total energy + Delta-G solvation = -3705.136105 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.05011 -40.83068 -39.85572 -38.26816 -36.18635 -35.52693 -34.30587 -32.70202 -32.05471 -31.23648 -29.10016 -27.73170 -27.27774 -25.65126 -24.23938 -23.62872 -22.65558 -21.62400 -19.95721 -19.84850 -18.94164 -18.78061 -18.06509 -17.11883 -16.71432 -16.42273 -16.13643 -15.86856 -15.54876 -15.42914 -15.29863 -14.91905 -14.84486 -14.55068 -14.39572 -14.14844 -13.80975 -13.59021 -13.54796 -13.38102 -13.12649 -12.93125 -12.89153 -12.67619 -12.52371 -12.27286 -12.15174 -11.94668 -11.75473 -11.62741 -11.15425 -11.05161 -10.77680 -9.81700 -9.55981 -9.49160 -8.47759 -8.29266 -6.13973 -0.16261 0.40796 0.61405 0.89708 1.36288 1.45136 1.52184 1.58557 2.06157 2.17997 2.66383 2.97729 3.29063 3.38434 3.49462 3.68685 3.72322 3.77901 4.04214 4.08926 4.16907 4.23777 4.32418 4.38629 4.40217 4.57105 4.60791 4.71244 4.77365 4.83930 4.92058 4.92660 5.02972 5.07655 5.13540 5.21324 5.28304 5.29107 5.36553 5.49793 5.63088 5.69260 5.70725 5.91643 5.93174 6.02407 6.16413 6.22285 6.93966 6.97095 7.76777 8.74971 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.030071 B = 0.002328 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.892225 B =12025.577755 C =12905.837973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.109 4.109 3 C -0.104 4.104 4 C -0.039 4.039 5 C -0.130 4.130 6 C -0.054 4.054 7 C -0.202 4.202 8 C 0.117 3.883 9 O -0.227 6.227 10 C -0.414 4.414 11 H 0.104 0.896 12 C -0.022 4.022 13 N -0.918 5.918 14 Si 1.017 2.983 15 H -0.257 1.257 16 H -0.273 1.273 17 H -0.257 1.257 18 C -0.242 4.242 19 C -0.058 4.058 20 C -0.096 4.096 21 C -0.112 4.112 22 C 0.131 3.869 23 N -0.654 5.654 24 C 0.517 3.483 25 O -0.576 6.576 26 C -0.134 4.134 27 C -0.073 4.073 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.137 0.863 32 H 0.156 0.844 33 H 0.118 0.882 34 H 0.273 0.727 35 H 0.122 0.878 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.412 0.588 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.495 -19.640 0.627 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.112 4.112 3 C -0.123 4.123 4 C -0.040 4.040 5 C -0.131 4.131 6 C -0.072 4.072 7 C -0.221 4.221 8 C 0.066 3.934 9 O -0.134 6.134 10 C -0.490 4.490 11 H 0.121 0.879 12 C -0.220 4.220 13 N -0.556 5.556 14 Si 0.837 3.163 15 H -0.181 1.181 16 H -0.197 1.197 17 H -0.182 1.182 18 C -0.261 4.261 19 C -0.076 4.076 20 C -0.114 4.114 21 C -0.115 4.115 22 C 0.036 3.964 23 N -0.298 5.298 24 C 0.307 3.693 25 O -0.456 6.456 26 C -0.173 4.173 27 C -0.110 4.110 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.154 0.846 32 H 0.173 0.827 33 H 0.136 0.864 34 H 0.082 0.918 35 H 0.140 0.860 36 H 0.161 0.839 37 H 0.164 0.836 38 H 0.252 0.748 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.245 -20.075 0.688 23.020 hybrid contribution -0.510 1.290 -0.198 1.401 sum -11.755 -18.785 0.490 22.165 Atomic orbital electron populations 1.20800 0.89247 1.03771 1.03407 1.19633 0.97200 0.90815 1.03510 1.21081 0.93056 0.97872 1.00272 1.18699 0.93071 0.91717 1.00470 1.18574 0.92889 0.92145 1.09465 1.21103 0.93310 0.96824 0.95918 1.20419 0.99956 0.90289 1.11419 1.20061 0.92118 0.87347 0.93896 1.83926 1.36500 1.12212 1.80719 1.21800 0.91969 0.82664 1.52554 0.87911 1.26585 0.97381 1.02190 0.95822 1.70177 1.09681 1.27428 1.48320 0.84663 0.77237 0.74538 0.79907 1.18111 1.19735 1.18151 1.21204 0.93315 0.99665 1.11921 1.21145 1.00080 0.90541 0.95806 1.21053 1.00770 0.89853 0.99736 1.19617 0.91240 0.96459 1.04178 1.17561 0.91121 0.84881 1.02865 1.43572 1.15443 1.06035 1.64720 1.21351 0.91087 0.81919 0.74935 1.90755 1.68342 1.31836 1.54651 1.21747 0.89003 1.03385 1.03161 1.20505 0.99444 0.89238 1.01851 0.89895 0.91239 0.90012 0.84565 0.82676 0.86379 0.91789 0.86034 0.83910 0.83582 0.74831 0.85968 0.86663 0.86628 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 9.45 71.24 0.67 -0.77 16 2 C -0.11 -1.95 5.89 -19.77 -0.12 -2.07 16 3 C -0.10 -2.19 9.07 22.47 0.20 -1.98 16 4 C -0.04 -0.92 5.88 -20.02 -0.12 -1.04 16 5 C -0.13 -3.90 5.88 -20.02 -0.12 -4.02 16 6 C -0.05 -1.68 9.42 22.47 0.21 -1.47 16 7 C -0.20 -8.12 9.98 22.36 0.22 -7.90 16 8 C 0.12 5.60 6.65 22.64 0.15 5.75 16 9 O -0.23 -13.33 9.75 -22.03 -0.21 -13.55 16 10 C -0.41 -23.50 9.48 67.92 0.64 -22.85 16 11 H 0.10 5.31 5.19 -2.91 -0.02 5.30 16 12 C -0.02 -1.22 5.49 84.83 0.47 -0.75 16 13 N -0.92 -55.35 13.67 21.61 0.30 -55.05 16 14 Si 1.02 41.77 29.55 68.60 2.03 43.79 16 15 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 16 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 17 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 18 C -0.24 -10.08 9.15 22.36 0.20 -9.88 16 19 C -0.06 -1.90 9.42 22.47 0.21 -1.69 16 20 C -0.10 -1.86 9.06 22.46 0.20 -1.65 16 21 C -0.11 -1.91 5.65 -19.78 -0.11 -2.02 16 22 C 0.13 2.35 6.49 38.24 0.25 2.60 16 23 N -0.65 -11.08 5.08 -303.92 -1.54 -12.62 16 24 C 0.52 9.86 7.72 87.63 0.68 10.54 16 25 O -0.58 -15.31 17.91 -3.07 -0.05 -15.36 16 26 C -0.13 -1.62 6.08 29.76 0.18 -1.44 16 27 C -0.07 -0.82 5.99 29.81 0.18 -0.65 16 28 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.07 0.76 6.86 -2.39 -0.02 0.74 16 30 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 31 H 0.14 2.58 6.19 -2.91 -0.02 2.56 16 32 H 0.16 3.53 6.19 -2.91 -0.02 3.51 16 33 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 34 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 35 H 0.12 5.13 5.62 -2.91 -0.02 5.11 16 36 H 0.14 3.69 6.19 -2.91 -0.02 3.68 16 37 H 0.15 2.30 6.19 -2.91 -0.02 2.28 16 38 H 0.41 6.08 7.21 -92.70 -0.67 5.42 16 39 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.12 0.82 8.06 -2.39 -0.02 0.80 16 42 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -74.19 348.75 4.94 -69.25 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.42 Total: 24.85 kcal Atomic # 6 Polarization: -45.32 SS G_CDS: 4.01 Total: -41.30 kcal Atomic # 7 Polarization: -66.43 SS G_CDS: -1.25 Total: -67.68 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.27 Total: -28.91 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -74.19 4.94 -69.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243593729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.861 kcal (2) G-P(sol) polarization free energy of solvation -74.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds