Wall clock time and date at job start Tue Mar 31 2020 13:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38100 * 119.98407 * 2 1 4 4 C 1.39336 * 120.13633 * 180.02562 * 3 2 1 5 5 C 1.48365 * 120.02766 * 179.97438 * 4 3 2 6 6 C 1.39356 * 120.11864 * 180.02562 * 5 4 3 7 7 C 1.38016 * 119.87454 * 179.97438 * 6 5 4 8 8 C 1.38325 * 120.12397 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.87925 * 179.70027 * 8 7 6 10 10 C 1.50698 * 109.46625 * 89.99944 * 9 8 7 11 11 H 1.07997 * 120.00546 * 0.02562 * 10 9 8 12 12 C 1.37886 * 119.99811 * 179.97438 * 10 9 8 13 13 N 1.31508 * 120.00348 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99711 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47213 * 89.99627 * 14 12 10 16 16 H 1.48496 * 109.47004 * 209.99833 * 14 12 10 17 17 H 1.48498 * 109.47180 * 330.00002 * 14 12 10 18 18 C 1.38324 * 120.24668 * 359.97438 * 8 7 6 19 19 C 1.38016 * 120.12370 * 0.02562 * 18 8 7 20 20 C 1.39439 * 119.94042 * 0.21046 * 4 3 2 21 21 C 1.38246 * 119.72427 * 359.48618 * 20 4 3 22 22 C 1.38485 * 119.98105 * 179.97438 * 2 1 3 23 23 O 1.36003 * 120.54005 * 0.06352 * 22 2 1 24 24 C 1.42980 * 116.71886 * 147.12587 * 23 22 2 25 25 C 1.50751 * 109.64348 * 46.50174 * 24 23 22 26 26 O 1.21304 * 120.13277 * 148.64297 * 25 24 23 27 27 N 1.35077 * 119.73091 * 328.62946 * 25 24 23 28 28 H 1.09001 * 109.47372 * 90.00329 * 1 2 3 29 29 H 1.08998 * 109.47392 * 210.00041 * 1 2 3 30 30 H 1.08999 * 109.47635 * 330.00579 * 1 2 3 31 31 H 1.08006 * 119.92580 * 359.97438 * 3 2 1 32 32 H 1.08000 * 120.06402 * 359.97438 * 6 5 4 33 33 H 1.08001 * 119.94425 * 180.02562 * 7 6 5 34 34 H 1.08995 * 109.46862 * 209.99580 * 9 8 7 35 35 H 1.08999 * 109.46894 * 330.00264 * 9 8 7 36 36 H 0.96996 * 120.00102 * 180.02562 * 13 12 10 37 37 H 1.08001 * 119.94304 * 180.02562 * 18 8 7 38 38 H 1.07999 * 120.06715 * 180.02562 * 19 18 8 39 39 H 1.08001 * 120.13775 * 179.72232 * 20 4 3 40 40 H 1.09002 * 109.44456 * 166.55614 * 24 23 22 41 41 H 1.09002 * 109.44496 * 286.48740 * 24 23 22 42 42 H 0.97001 * 120.50815 * 181.65142 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1971 1.1962 0.0000 4 6 3.5904 1.1999 -0.0005 5 6 4.3295 2.4864 -0.0011 6 6 5.7230 2.4923 -0.0022 7 6 6.4054 3.6920 -0.0033 8 6 5.7086 4.8869 -0.0027 9 6 6.4593 6.1937 0.0030 10 6 6.7143 6.6326 -1.4160 11 1 6.3671 6.0262 -2.2395 12 6 7.3899 7.8089 -1.6629 13 7 7.6129 8.1917 -2.9011 14 14 7.9898 8.8581 -0.2385 15 1 9.3630 8.4390 0.1410 16 1 8.0029 10.2858 -0.6465 17 1 7.0804 8.6833 0.9224 18 6 4.3254 4.8870 -0.0016 19 6 3.6327 3.6932 -0.0006 20 6 4.2896 -0.0066 -0.0055 21 6 3.5946 -1.2016 0.0009 22 6 2.1989 -1.1995 0.0005 23 8 1.5297 -2.3835 -0.0002 24 6 2.1477 -3.4709 -0.6930 25 6 3.6037 -3.5532 -0.3108 26 8 4.1671 -4.6271 -0.2863 27 7 4.2784 -2.4261 0.0039 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 1.6556 2.1307 -0.0004 32 1 6.2680 1.5599 -0.0022 33 1 7.4854 3.6979 -0.0045 34 1 5.8669 6.9508 0.5165 35 1 7.4103 6.0641 0.5196 36 1 8.0885 9.0190 -3.0748 37 1 3.7864 5.8228 -0.0016 38 1 2.5527 3.6943 -0.0002 39 1 5.3696 -0.0074 -0.0105 40 1 1.6490 -4.4023 -0.4248 41 1 2.0639 -3.3109 -1.7679 42 1 5.2213 -2.4630 0.2283 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244063457.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:01 Heat of formation + Delta-G solvation = -28.268196 kcal Electronic energy + Delta-G solvation = -25412.582545 eV Core-core repulsion = 21708.145319 eV Total energy + Delta-G solvation = -3704.437226 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.75266 -39.60849 -38.78962 -37.57463 -35.76168 -33.96452 -32.64511 -31.36686 -30.62344 -30.00983 -28.41537 -27.37818 -26.76017 -24.13952 -23.14883 -22.19465 -21.36332 -20.66742 -19.55286 -19.05182 -17.82028 -17.29793 -16.84357 -16.53455 -16.27791 -15.61486 -15.09394 -14.91832 -14.73736 -14.31787 -14.16349 -13.94564 -13.84284 -13.63013 -13.24415 -13.00484 -12.90967 -12.63665 -12.55898 -12.35826 -12.07440 -11.75974 -11.52167 -11.51196 -11.38858 -10.90463 -10.71251 -10.46729 -10.31304 -10.11335 -10.04236 -9.46555 -8.87727 -8.65109 -8.50377 -8.44382 -7.48082 -6.13841 -4.13815 0.60184 0.88509 1.78003 1.87354 2.18174 2.40199 2.95318 3.23635 3.32021 3.33840 3.47496 3.61588 4.27592 4.35361 4.37352 4.50325 4.53851 4.68797 4.85507 4.96372 5.05175 5.16271 5.17129 5.24466 5.35073 5.42603 5.52681 5.60111 5.73896 5.78802 5.87935 5.96395 6.02275 6.17770 6.29392 6.34813 6.40475 6.41671 6.54112 6.83615 6.91636 6.92490 6.92751 6.98755 7.39401 7.44631 7.46906 7.62636 8.41723 8.90906 9.45864 10.98934 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.024264 B = 0.002380 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.694759 B =11760.349841 C =12459.505548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.066 4.066 3 C -0.111 4.111 4 C -0.002 4.002 5 C -0.088 4.088 6 C -0.104 4.104 7 C -0.122 4.122 8 C -0.016 4.016 9 C 0.011 3.989 10 C -0.515 4.515 11 H 0.074 0.926 12 C 0.070 3.930 13 N -0.898 5.898 14 Si 0.878 3.122 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.264 1.264 18 C -0.122 4.122 19 C -0.102 4.102 20 C -0.128 4.128 21 C 0.100 3.900 22 C 0.061 3.939 23 O -0.300 6.300 24 C 0.051 3.949 25 C 0.491 3.509 26 O -0.517 6.517 27 N -0.658 5.658 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.138 0.862 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.030 0.970 35 H 0.025 0.975 36 H 0.265 0.735 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.099 0.901 42 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.255 -19.212 6.934 24.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.067 4.067 3 C -0.129 4.129 4 C -0.003 4.003 5 C -0.088 4.088 6 C -0.122 4.122 7 C -0.140 4.140 8 C -0.016 4.016 9 C -0.026 4.026 10 C -0.553 4.553 11 H 0.092 0.908 12 C -0.132 4.132 13 N -0.536 5.536 14 Si 0.705 3.295 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.189 1.189 18 C -0.140 4.140 19 C -0.120 4.120 20 C -0.148 4.148 21 C 0.005 3.995 22 C 0.015 3.985 23 O -0.215 6.215 24 C -0.027 4.027 25 C 0.278 3.722 26 O -0.392 6.392 27 N -0.305 5.305 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.156 0.844 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.048 0.952 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.154 0.846 40 H 0.162 0.838 41 H 0.116 0.884 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -13.222 -19.780 6.868 24.763 hybrid contribution 1.249 0.621 0.472 1.472 sum -11.973 -19.159 7.341 23.755 Atomic orbital electron populations 1.20669 0.89840 1.03230 1.02737 1.19216 0.96689 0.89619 1.01170 1.21040 0.93128 0.97262 1.01506 1.18608 0.92573 0.91888 0.97196 1.18421 0.92974 0.91112 1.06266 1.21077 0.93016 0.97839 1.00239 1.21022 1.00114 0.91648 1.01258 1.20434 0.93636 0.96417 0.91087 1.18871 0.94967 0.90024 0.98756 1.20896 1.36957 1.07136 0.90307 0.90784 1.25002 0.95368 0.97296 0.95540 1.69890 1.41419 1.23432 1.18893 0.86805 0.79714 0.79815 0.83187 1.20139 1.21194 1.18905 1.21030 0.94192 0.97573 1.01200 1.21093 0.99137 0.91721 1.00010 1.20668 1.00219 0.89492 1.04470 1.17854 0.90491 0.85988 1.05169 1.18342 0.87750 0.86059 1.06373 1.86210 1.46258 1.16988 1.72018 1.23154 0.88923 0.91633 0.99025 1.21581 0.90475 0.83550 0.76585 1.90818 1.70301 1.27285 1.50780 1.43733 1.14075 1.05344 1.67329 0.90889 0.90876 0.91078 0.84408 0.86680 0.85996 0.95227 0.95701 0.92516 0.85914 0.86367 0.84599 0.83846 0.88354 0.74433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 9.80 36.00 0.35 -0.45 16 2 C -0.07 -0.65 5.88 -104.59 -0.62 -1.26 16 3 C -0.11 -1.17 9.07 -39.22 -0.36 -1.53 16 4 C 0.00 -0.02 5.88 -104.87 -0.62 -0.64 16 5 C -0.09 -1.25 5.88 -104.90 -0.62 -1.87 16 6 C -0.10 -1.54 9.43 -39.25 -0.37 -1.91 16 7 C -0.12 -2.15 9.68 -39.63 -0.38 -2.53 16 8 C -0.02 -0.31 5.07 -104.56 -0.53 -0.84 16 9 C 0.01 0.25 4.17 -29.03 -0.12 0.13 16 10 C -0.52 -14.13 9.65 -34.44 -0.33 -14.46 16 11 H 0.07 2.23 7.98 -52.49 -0.42 1.82 16 12 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 13 N -0.90 -26.93 13.96 55.43 0.77 -26.16 16 14 Si 0.88 20.76 27.47 -169.99 -4.67 16.09 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 18 C -0.12 -2.13 9.68 -39.63 -0.38 -2.51 16 19 C -0.10 -1.49 9.43 -39.25 -0.37 -1.86 16 20 C -0.13 -1.39 9.32 -39.13 -0.36 -1.76 16 21 C 0.10 1.05 6.54 -83.51 -0.55 0.50 16 22 C 0.06 0.63 6.41 -39.00 -0.25 0.38 16 23 O -0.30 -2.82 9.52 -19.75 -0.19 -3.01 16 24 C 0.05 0.38 7.16 36.03 0.26 0.64 16 25 C 0.49 5.00 7.94 -10.83 -0.09 4.92 16 26 O -0.52 -6.76 17.95 5.54 0.10 -6.66 16 27 N -0.66 -6.31 5.47 -9.68 -0.05 -6.36 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.53 7.55 -51.93 -0.39 0.14 16 30 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.14 1.25 6.19 -52.48 -0.32 0.93 16 32 H 0.12 1.39 6.20 -52.49 -0.33 1.06 16 33 H 0.12 2.06 8.06 -52.49 -0.42 1.63 16 34 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 35 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 38 H 0.12 1.38 6.20 -52.49 -0.33 1.05 16 39 H 0.14 1.29 6.21 -52.49 -0.33 0.96 16 40 H 0.14 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.42 3.37 8.89 -40.82 -0.36 3.00 16 LS Contribution 352.37 15.07 5.31 5.31 Total: -1.00 -32.51 352.37 -9.09 -41.60 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -4.94 Total: 2.37 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -5.43 Total: -23.19 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.72 Total: -32.52 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.09 Total: -9.67 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.51 -9.09 -41.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244063457.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.337 kcal (2) G-P(sol) polarization free energy of solvation -32.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds