Wall clock time and date at job start Tue Mar 31 2020 13:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38098 * 119.98056 * 2 1 4 4 C 1.39342 * 120.13736 * 179.97438 * 3 2 1 5 5 C 1.48354 * 120.03412 * 179.97438 * 4 3 2 6 6 C 1.39380 * 120.12236 * 359.72986 * 5 4 3 7 7 C 1.37991 * 119.87604 * 179.74037 * 6 5 4 8 8 C 1.38347 * 120.12174 * 0.50849 * 7 6 5 9 9 C 1.38298 * 120.25125 * 359.76414 * 8 7 6 10 10 C 1.50699 * 119.94263 * 179.97438 * 9 8 7 11 11 C 1.50694 * 109.47415 * 270.02380 * 10 9 8 12 12 H 1.07999 * 119.99827 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99904 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00066 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99945 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.46994 * 90.00053 * 15 13 11 17 17 H 1.48497 * 109.47145 * 209.99455 * 15 13 11 18 18 H 1.48494 * 109.47296 * 329.99980 * 15 13 11 19 19 C 1.38041 * 120.11823 * 359.97438 * 9 8 7 20 20 C 1.39441 * 119.93446 * 359.96568 * 4 3 2 21 21 C 1.38245 * 119.72903 * 359.97438 * 20 4 3 22 22 C 1.38480 * 119.98015 * 179.72098 * 2 1 3 23 23 O 1.36003 * 120.53584 * 0.09545 * 22 2 1 24 24 C 1.42985 * 116.71692 * 147.11421 * 23 22 2 25 25 C 1.50756 * 109.64012 * 46.50222 * 24 23 22 26 26 O 1.21300 * 120.13411 * 148.64681 * 25 24 23 27 27 N 1.34831 * 119.65585 * 328.11824 * 25 24 23 28 28 H 1.09002 * 109.47152 * 90.00261 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00361 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00342 * 1 2 3 31 31 H 1.08001 * 119.93103 * 359.97098 * 3 2 1 32 32 H 1.07997 * 120.06043 * 359.97438 * 6 5 4 33 33 H 1.08000 * 119.94183 * 180.22960 * 7 6 5 34 34 H 1.07999 * 119.87676 * 179.74361 * 8 7 6 35 35 H 1.08997 * 109.46785 * 30.03306 * 10 9 8 36 36 H 1.09004 * 109.46633 * 150.02218 * 10 9 8 37 37 H 0.97004 * 119.99961 * 180.02562 * 14 13 11 38 38 H 1.08006 * 120.06267 * 179.97438 * 19 9 8 39 39 H 1.08006 * 120.13436 * 179.97438 * 20 4 3 40 40 H 1.08993 * 109.44436 * 166.55796 * 24 23 22 41 41 H 1.09003 * 109.43842 * 286.48960 * 24 23 22 42 42 H 0.96999 * 120.38692 * 181.65959 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1962 0.0000 4 6 3.5905 1.2000 0.0005 5 6 4.3295 2.4864 0.0000 6 6 3.6327 3.6934 -0.0068 7 6 4.3252 4.8870 -0.0019 8 6 5.7086 4.8870 -0.0009 9 6 6.4053 3.6923 0.0001 10 6 7.9123 3.7004 0.0006 11 6 8.4152 3.7028 -1.4199 12 1 7.7137 3.6993 -2.2411 13 6 9.7708 3.7095 -1.6713 14 7 10.6250 3.7143 -0.6713 15 14 10.3941 3.7132 -3.4323 16 1 10.5525 5.1143 -3.8984 17 1 11.7058 3.0197 -3.4946 18 1 9.4198 3.0087 -4.3038 19 6 5.7229 2.4924 0.0007 20 6 4.2897 -0.0065 0.0018 21 6 3.5947 -1.2015 0.0031 22 6 2.1990 -1.1995 0.0058 23 8 1.5296 -2.3834 0.0097 24 6 2.1479 -3.4736 -0.6785 25 6 3.6037 -3.5544 -0.2955 26 8 4.1671 -4.6282 -0.2665 27 7 4.2783 -2.4261 0.0040 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.6557 2.1307 -0.0005 32 1 2.5527 3.6946 -0.0121 33 1 3.7862 5.8229 -0.0034 34 1 6.2466 5.8234 -0.0012 35 1 8.2706 4.5924 0.5145 36 1 8.2802 2.8125 0.5148 37 1 11.5788 3.7194 -0.8482 38 1 6.2679 1.5600 0.0010 39 1 5.3697 -0.0073 0.0018 40 1 1.6491 -4.4039 -0.4068 41 1 2.0643 -3.3178 -1.7541 42 1 5.2213 -2.4631 0.2285 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244064280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:05 Heat of formation + Delta-G solvation = -32.434939 kcal Electronic energy + Delta-G solvation = -25750.803904 eV Core-core repulsion = 22046.185995 eV Total energy + Delta-G solvation = -3704.617910 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.67131 -39.52212 -38.69561 -37.47008 -35.66633 -33.73842 -32.87228 -31.43726 -30.61457 -29.39958 -27.94406 -27.10646 -26.84482 -24.07702 -23.27895 -22.67347 -21.15311 -20.57359 -19.27746 -18.98044 -17.65805 -17.14409 -16.55614 -16.39041 -16.21227 -15.49583 -15.01760 -14.92335 -14.71499 -14.45234 -14.09689 -13.98274 -13.86852 -13.34039 -13.11102 -12.95131 -12.73062 -12.66322 -12.40716 -12.05412 -11.96012 -11.61120 -11.43762 -11.32909 -11.05232 -10.82587 -10.77204 -10.54791 -10.40042 -10.32651 -9.62646 -9.52117 -8.97501 -8.48718 -8.40873 -8.04009 -7.56414 -6.10773 -4.15051 0.66447 0.97886 1.85372 1.99736 2.26314 2.51873 3.03435 3.26057 3.32844 3.36499 3.55252 3.71076 4.33510 4.37361 4.51168 4.57925 4.61067 4.76435 4.93835 5.04766 5.13754 5.22753 5.23948 5.32764 5.45427 5.45879 5.57127 5.65708 5.84888 5.90427 5.91664 6.05534 6.08755 6.26600 6.36354 6.43901 6.50027 6.59425 6.64236 6.95184 7.05067 7.06486 7.09323 7.41552 7.51167 7.58859 7.74216 7.84909 8.24009 8.90309 9.49406 10.99052 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012236 B = 0.003277 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.806405 B = 8542.490835 C =10275.561484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.070 4.070 3 C -0.109 4.109 4 C -0.007 4.007 5 C -0.062 4.062 6 C -0.132 4.132 7 C -0.122 4.122 8 C -0.115 4.115 9 C -0.033 4.033 10 C 0.047 3.953 11 C -0.514 4.514 12 H 0.057 0.943 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.895 3.105 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.107 4.107 20 C -0.122 4.122 21 C 0.100 3.900 22 C 0.063 3.937 23 O -0.301 6.301 24 C 0.051 3.949 25 C 0.491 3.509 26 O -0.517 6.517 27 N -0.656 5.656 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.137 0.863 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.030 0.970 36 H 0.029 0.971 37 H 0.263 0.737 38 H 0.120 0.880 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.098 0.902 42 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.667 -7.480 1.819 22.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.071 4.071 3 C -0.128 4.128 4 C -0.008 4.008 5 C -0.062 4.062 6 C -0.150 4.150 7 C -0.140 4.140 8 C -0.133 4.133 9 C -0.033 4.033 10 C 0.010 3.990 11 C -0.552 4.552 12 H 0.076 0.924 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.722 3.278 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.125 4.125 20 C -0.142 4.142 21 C 0.005 3.995 22 C 0.017 3.983 23 O -0.215 6.215 24 C -0.028 4.028 25 C 0.278 3.722 26 O -0.392 6.392 27 N -0.303 5.303 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.155 0.845 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.138 0.862 39 H 0.159 0.841 40 H 0.161 0.839 41 H 0.116 0.884 42 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -20.520 -8.199 1.905 22.179 hybrid contribution 1.306 0.003 -1.010 1.651 sum -19.214 -8.195 0.896 20.908 Atomic orbital electron populations 1.20654 0.89908 1.03150 1.02611 1.19187 0.96602 0.89637 1.01664 1.21004 0.93060 0.97149 1.01540 1.18632 0.92530 0.91996 0.97655 1.18569 0.93136 0.91076 1.03447 1.20913 0.98845 0.91790 1.03457 1.20982 0.94496 0.97276 1.01292 1.21224 0.93535 0.98511 1.00012 1.20643 0.99058 0.91691 0.91878 1.18373 0.84287 0.98491 0.97830 1.21042 0.91463 1.51287 0.91400 0.92440 1.25006 0.96895 0.95089 0.97248 1.69954 1.02236 1.50282 1.30712 0.86547 0.78256 0.78255 0.84735 1.20518 1.21124 1.19798 1.21143 0.92202 0.98561 1.00558 1.20794 1.00676 0.89453 1.03262 1.17864 0.90445 0.86061 1.05145 1.18354 0.87750 0.86063 1.06149 1.86202 1.46269 1.16850 1.72196 1.23161 0.89065 0.91489 0.99051 1.21474 0.90460 0.83594 0.76714 1.90819 1.70334 1.27330 1.50732 1.43695 1.14090 1.05197 1.67346 0.91007 0.91194 0.90894 0.84527 0.86669 0.86682 0.86236 0.95185 0.95312 0.92772 0.86232 0.84147 0.83883 0.88400 0.74237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 9.80 36.01 0.35 -0.47 16 2 C -0.07 -0.73 5.88 -104.58 -0.62 -1.35 16 3 C -0.11 -1.22 9.07 -39.22 -0.36 -1.57 16 4 C -0.01 -0.10 5.88 -104.87 -0.62 -0.71 16 5 C -0.06 -0.97 5.88 -104.90 -0.62 -1.59 16 6 C -0.13 -1.88 9.43 -39.25 -0.37 -2.25 16 7 C -0.12 -1.85 10.03 -39.63 -0.40 -2.24 16 8 C -0.11 -2.09 9.69 -39.52 -0.38 -2.47 16 9 C -0.03 -0.67 5.06 -104.67 -0.53 -1.20 16 10 C 0.05 1.16 5.10 -29.04 -0.15 1.01 16 11 C -0.51 -13.96 9.09 -34.44 -0.31 -14.27 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -25.82 13.29 55.43 0.74 -25.09 16 15 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 C -0.11 -1.95 9.08 -39.25 -0.36 -2.31 16 20 C -0.12 -1.58 9.32 -39.13 -0.36 -1.94 16 21 C 0.10 1.21 6.54 -83.51 -0.55 0.66 16 22 C 0.06 0.72 6.41 -39.00 -0.25 0.47 16 23 O -0.30 -3.10 9.51 -19.75 -0.19 -3.28 16 24 C 0.05 0.43 7.16 36.03 0.26 0.69 16 25 C 0.49 5.72 7.94 -10.93 -0.09 5.64 16 26 O -0.52 -7.54 17.95 5.54 0.10 -7.44 16 27 N -0.66 -7.52 5.46 -9.73 -0.05 -7.58 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.07 0.56 7.54 -51.93 -0.39 0.17 16 31 H 0.14 1.26 6.19 -52.49 -0.32 0.93 16 32 H 0.12 1.28 6.20 -52.49 -0.33 0.95 16 33 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 35 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 36 H 0.03 0.74 8.08 -51.93 -0.42 0.32 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.12 2.11 6.20 -52.48 -0.33 1.78 16 39 H 0.14 1.78 6.21 -52.48 -0.33 1.46 16 40 H 0.14 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.42 4.36 8.88 -40.82 -0.36 4.00 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -31.74 355.95 -9.47 -41.20 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -4.97 Total: 3.06 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -5.44 Total: -22.36 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.68 Total: -32.66 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.74 -9.47 -41.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244064280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.768 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds