Wall clock time and date at job start Tue Mar 31 2020 13:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38098 * 119.98056 * 2 1 4 4 C 1.39342 * 120.13736 * 179.97438 * 3 2 1 5 5 C 1.48354 * 120.03412 * 179.97438 * 4 3 2 6 6 C 1.39380 * 120.12236 * 359.72986 * 5 4 3 7 7 C 1.37991 * 119.87604 * 179.74037 * 6 5 4 8 8 C 1.38347 * 120.12174 * 0.50849 * 7 6 5 9 9 C 1.38298 * 120.25125 * 359.76414 * 8 7 6 10 10 C 1.50699 * 119.94263 * 179.97438 * 9 8 7 11 11 C 1.50694 * 109.47415 * 270.02380 * 10 9 8 12 12 H 1.07999 * 119.99827 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99904 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00066 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99945 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.46994 * 90.00053 * 15 13 11 17 17 H 1.48497 * 109.47145 * 209.99455 * 15 13 11 18 18 H 1.48494 * 109.47296 * 329.99980 * 15 13 11 19 19 C 1.38041 * 120.11823 * 359.97438 * 9 8 7 20 20 C 1.39441 * 119.93446 * 359.96568 * 4 3 2 21 21 C 1.38245 * 119.72903 * 359.97438 * 20 4 3 22 22 C 1.38480 * 119.98015 * 179.72098 * 2 1 3 23 23 O 1.36003 * 120.53584 * 0.09545 * 22 2 1 24 24 C 1.42985 * 116.71692 * 147.11421 * 23 22 2 25 25 C 1.50756 * 109.64012 * 46.50222 * 24 23 22 26 26 O 1.21300 * 120.13411 * 148.64681 * 25 24 23 27 27 N 1.34831 * 119.65585 * 328.11824 * 25 24 23 28 28 H 1.09002 * 109.47152 * 90.00261 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00361 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00342 * 1 2 3 31 31 H 1.08001 * 119.93103 * 359.97098 * 3 2 1 32 32 H 1.07997 * 120.06043 * 359.97438 * 6 5 4 33 33 H 1.08000 * 119.94183 * 180.22960 * 7 6 5 34 34 H 1.07999 * 119.87676 * 179.74361 * 8 7 6 35 35 H 1.08997 * 109.46785 * 30.03306 * 10 9 8 36 36 H 1.09004 * 109.46633 * 150.02218 * 10 9 8 37 37 H 0.97004 * 119.99961 * 180.02562 * 14 13 11 38 38 H 1.08006 * 120.06267 * 179.97438 * 19 9 8 39 39 H 1.08006 * 120.13436 * 179.97438 * 20 4 3 40 40 H 1.08993 * 109.44436 * 166.55796 * 24 23 22 41 41 H 1.09003 * 109.43842 * 286.48960 * 24 23 22 42 42 H 0.96999 * 120.38692 * 181.65959 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1962 0.0000 4 6 3.5905 1.2000 0.0005 5 6 4.3295 2.4864 0.0000 6 6 3.6327 3.6934 -0.0068 7 6 4.3252 4.8870 -0.0019 8 6 5.7086 4.8870 -0.0009 9 6 6.4053 3.6923 0.0001 10 6 7.9123 3.7004 0.0006 11 6 8.4152 3.7028 -1.4199 12 1 7.7137 3.6993 -2.2411 13 6 9.7708 3.7095 -1.6713 14 7 10.6250 3.7143 -0.6713 15 14 10.3941 3.7132 -3.4323 16 1 10.5525 5.1143 -3.8984 17 1 11.7058 3.0197 -3.4946 18 1 9.4198 3.0087 -4.3038 19 6 5.7229 2.4924 0.0007 20 6 4.2897 -0.0065 0.0018 21 6 3.5947 -1.2015 0.0031 22 6 2.1990 -1.1995 0.0058 23 8 1.5296 -2.3834 0.0097 24 6 2.1479 -3.4736 -0.6785 25 6 3.6037 -3.5544 -0.2955 26 8 4.1671 -4.6282 -0.2665 27 7 4.2783 -2.4261 0.0040 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.6557 2.1307 -0.0005 32 1 2.5527 3.6946 -0.0121 33 1 3.7862 5.8229 -0.0034 34 1 6.2466 5.8234 -0.0012 35 1 8.2706 4.5924 0.5145 36 1 8.2802 2.8125 0.5148 37 1 11.5788 3.7194 -0.8482 38 1 6.2679 1.5600 0.0010 39 1 5.3697 -0.0073 0.0018 40 1 1.6491 -4.4039 -0.4068 41 1 2.0643 -3.3178 -1.7541 42 1 5.2213 -2.4631 0.2285 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244064280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:04 Heat of formation + Delta-G solvation = -50.590402 kcal Electronic energy + Delta-G solvation = -25751.591184 eV Core-core repulsion = 22046.185995 eV Total energy + Delta-G solvation = -3705.405189 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.54927 -40.61693 -39.78568 -38.43292 -36.59806 -35.52422 -34.04080 -32.99810 -31.65588 -30.40861 -29.17926 -28.30081 -27.85263 -25.41669 -24.75647 -23.81823 -22.10047 -21.88135 -20.34771 -19.84622 -18.62215 -18.51524 -18.00951 -17.61171 -17.26825 -16.62922 -16.35589 -16.06370 -15.86623 -15.64412 -15.24862 -15.02327 -14.71163 -14.52184 -14.39883 -14.05818 -13.92641 -13.70168 -13.45169 -13.36028 -13.29591 -12.89563 -12.72366 -12.63222 -12.45411 -12.31827 -12.10765 -11.86847 -11.81696 -11.51662 -11.33352 -11.22405 -10.63472 -10.00572 -9.48290 -9.35979 -8.65309 -8.23024 -6.36509 -0.35156 0.05902 0.66895 0.81448 1.24080 1.37447 1.37953 1.49379 1.65159 2.22460 2.36695 2.58550 2.88390 3.07701 3.18038 3.48760 3.59944 3.97300 4.01119 4.08499 4.12697 4.18880 4.26429 4.39620 4.42999 4.52659 4.63585 4.73467 4.75219 4.82976 4.95805 5.06715 5.19770 5.24456 5.28271 5.31250 5.35407 5.40463 5.45826 5.60351 5.64384 5.70762 5.72990 5.82933 6.08213 6.10664 6.19951 6.26532 6.59942 6.76454 7.32339 8.86089 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012236 B = 0.003277 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.806405 B = 8542.490835 C =10275.561484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.067 4.067 3 C -0.096 4.096 4 C -0.029 4.029 5 C -0.054 4.054 6 C -0.120 4.120 7 C -0.110 4.110 8 C -0.134 4.134 9 C -0.065 4.065 10 C 0.056 3.944 11 C -0.528 4.528 12 H 0.054 0.946 13 C 0.005 3.995 14 N -0.930 5.930 15 Si 0.963 3.037 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.267 1.267 19 C -0.127 4.127 20 C -0.133 4.133 21 C 0.091 3.909 22 C 0.063 3.937 23 O -0.299 6.299 24 C 0.053 3.947 25 C 0.487 3.513 26 O -0.553 6.553 27 N -0.659 5.659 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.166 0.834 32 H 0.162 0.838 33 H 0.154 0.846 34 H 0.113 0.887 35 H 0.004 0.996 36 H 0.000 1.000 37 H 0.265 0.735 38 H 0.108 0.892 39 H 0.128 0.872 40 H 0.171 0.829 41 H 0.122 0.878 42 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.893 -7.299 0.583 25.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.069 4.069 3 C -0.115 4.115 4 C -0.030 4.030 5 C -0.054 4.054 6 C -0.138 4.138 7 C -0.128 4.128 8 C -0.153 4.153 9 C -0.065 4.065 10 C 0.019 3.981 11 C -0.566 4.566 12 H 0.072 0.928 13 C -0.193 4.193 14 N -0.570 5.570 15 Si 0.788 3.212 16 H -0.195 1.195 17 H -0.206 1.206 18 H -0.191 1.191 19 C -0.145 4.145 20 C -0.154 4.154 21 C -0.004 4.004 22 C 0.017 3.983 23 O -0.213 6.213 24 C -0.024 4.024 25 C 0.275 3.725 26 O -0.431 6.431 27 N -0.306 5.306 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.183 0.817 32 H 0.179 0.821 33 H 0.172 0.828 34 H 0.131 0.869 35 H 0.022 0.978 36 H 0.018 0.982 37 H 0.074 0.926 38 H 0.126 0.874 39 H 0.145 0.855 40 H 0.188 0.812 41 H 0.139 0.861 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -24.766 -8.001 0.673 26.035 hybrid contribution 2.503 -0.136 -0.565 2.569 sum -22.264 -8.137 0.107 23.704 Atomic orbital electron populations 1.20741 0.87403 1.04183 1.03788 1.19550 0.98260 0.88824 1.00219 1.21266 0.91794 0.98661 0.99735 1.18598 0.93658 0.90790 0.99965 1.18770 0.91865 0.93071 1.01715 1.21428 1.01037 0.90483 1.00819 1.21349 0.92875 0.99459 0.99119 1.21265 0.95408 0.97187 1.01395 1.20294 0.96528 0.93877 0.95817 1.18097 0.88032 0.95701 0.96253 1.21368 0.91839 1.50916 0.92444 0.92766 1.25913 0.97122 0.94596 1.01674 1.70081 1.02574 1.51302 1.33022 0.85472 0.77676 0.78689 0.79406 1.19460 1.20578 1.19118 1.21094 0.93963 0.97280 1.02147 1.20779 1.00345 0.90262 1.03994 1.17910 0.91024 0.85688 1.05827 1.18608 0.87385 0.87105 1.05220 1.86208 1.45956 1.16696 1.72488 1.23427 0.86742 0.91996 1.00239 1.22119 0.91724 0.82857 0.75779 1.90800 1.71408 1.28442 1.52447 1.43801 1.14302 1.05391 1.67057 0.89602 0.89267 0.90850 0.81685 0.82082 0.82788 0.86879 0.97810 0.98207 0.92570 0.87420 0.85457 0.81152 0.86056 0.74364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 9.80 71.24 0.70 -0.42 16 2 C -0.07 -1.16 5.88 -19.84 -0.12 -1.28 16 3 C -0.10 -1.78 9.07 22.50 0.20 -1.57 16 4 C -0.03 -0.74 5.88 -20.03 -0.12 -0.86 16 5 C -0.05 -1.63 5.88 -20.05 -0.12 -1.74 16 6 C -0.12 -3.00 9.43 22.49 0.21 -2.78 16 7 C -0.11 -3.03 10.03 22.24 0.22 -2.81 16 8 C -0.13 -4.96 9.69 22.31 0.22 -4.75 16 9 C -0.07 -2.83 5.06 -19.90 -0.10 -2.93 16 10 C 0.06 3.01 5.10 29.10 0.15 3.16 16 11 C -0.53 -30.18 9.09 25.60 0.23 -29.94 16 12 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 13 C 0.01 0.29 5.46 84.65 0.46 0.76 16 14 N -0.93 -56.19 13.29 21.45 0.28 -55.91 16 15 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 19 C -0.13 -4.87 9.08 22.49 0.20 -4.66 16 20 C -0.13 -3.50 9.32 22.56 0.21 -3.29 16 21 C 0.09 2.13 6.54 38.12 0.25 2.38 16 22 C 0.06 1.29 6.41 22.65 0.15 1.44 16 23 O -0.30 -5.28 9.51 -93.58 -0.89 -6.17 16 24 C 0.05 0.77 7.16 71.25 0.51 1.29 16 25 C 0.49 11.03 7.94 87.67 0.70 11.73 16 26 O -0.55 -16.16 17.95 -3.09 -0.06 -16.22 16 27 N -0.66 -15.27 5.46 -303.06 -1.65 -16.93 16 28 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 0.64 8.08 -2.39 -0.02 0.62 16 30 H 0.07 0.81 7.54 -2.38 -0.02 0.80 16 31 H 0.17 2.04 6.19 -2.91 -0.02 2.02 16 32 H 0.16 2.54 6.20 -2.91 -0.02 2.52 16 33 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 34 H 0.11 4.17 8.06 -2.91 -0.02 4.15 16 35 H 0.00 0.20 8.08 -2.39 -0.02 0.19 16 36 H 0.00 -0.02 8.08 -2.38 -0.02 -0.04 16 37 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 38 H 0.11 4.21 6.20 -2.91 -0.02 4.19 16 39 H 0.13 3.56 6.21 -2.91 -0.02 3.54 16 40 H 0.17 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.12 1.26 8.14 -2.39 -0.02 1.25 16 42 H 0.42 9.31 8.88 -92.71 -0.82 8.48 16 Total: -1.00 -73.05 355.95 3.92 -69.13 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.25 Total: 15.98 kcal Atomic # 6 Polarization: -40.25 SS G_CDS: 3.96 Total: -36.29 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -1.37 Total: -72.84 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.95 Total: -22.38 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -73.05 3.92 -69.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244064280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.543 kcal (2) G-P(sol) polarization free energy of solvation -73.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds