Wall clock time and date at job start Tue Mar 31 2020 13:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36234 * 119.94065 * 2 1 4 4 C 1.40935 * 119.87924 * 180.02562 * 3 2 1 5 5 C 1.40990 * 120.11005 * 179.97438 * 4 3 2 6 6 H 1.08003 * 119.99987 * 330.11513 * 5 4 3 7 7 C 1.39973 * 120.00037 * 150.10437 * 5 4 3 8 8 N 1.30814 * 120.00259 * 161.74166 * 7 5 4 9 9 Si 1.86799 * 119.99806 * 341.74132 * 7 5 4 10 10 H 1.48499 * 109.47022 * 95.41518 * 9 7 5 11 11 H 1.48495 * 109.47214 * 215.41558 * 9 7 5 12 12 H 1.48503 * 109.47129 * 335.41656 * 9 7 5 13 13 C 1.40969 * 119.77624 * 0.02562 * 4 3 2 14 14 C 1.36195 * 119.88346 * 359.73402 * 13 4 3 15 15 C 1.39982 * 119.94162 * 180.02562 * 2 1 3 16 16 C 1.47878 * 119.88642 * 359.95219 * 15 2 1 17 17 C 1.39722 * 120.05226 * 130.00091 * 16 15 2 18 18 C 1.37905 * 120.11278 * 179.68154 * 17 16 15 19 19 C 1.50698 * 119.96659 * 180.28910 * 18 17 16 20 20 C 1.38669 * 120.06458 * 0.31539 * 18 17 16 21 21 C 1.39679 * 120.10047 * 359.97438 * 20 18 17 22 22 C 1.38140 * 120.11651 * 359.96432 * 21 20 18 23 23 N 1.40232 * 119.25111 * 179.90947 * 21 20 18 24 24 C 1.35083 * 118.98087 * 15.53194 * 23 21 20 25 25 O 1.21288 * 120.13336 * 181.63275 * 24 23 21 26 26 C 1.50749 * 119.72899 * 1.65451 * 24 23 21 27 27 O 1.35938 * 120.51622 * 180.02562 * 20 18 17 28 28 H 1.08995 * 109.46974 * 269.97153 * 1 2 3 29 29 H 1.08999 * 109.47178 * 29.97967 * 1 2 3 30 30 H 1.09000 * 109.46683 * 149.97590 * 1 2 3 31 31 H 1.07994 * 120.05927 * 0.02562 * 3 2 1 32 32 H 0.97002 * 120.00439 * 180.02562 * 8 7 5 33 33 H 1.07997 * 120.05628 * 180.02562 * 13 4 3 34 34 H 1.07997 * 119.94593 * 180.25614 * 14 13 4 35 35 H 1.08002 * 119.94074 * 359.96096 * 17 16 15 36 36 H 1.08998 * 109.47476 * 90.00325 * 19 18 17 37 37 H 1.08999 * 109.47397 * 210.00561 * 19 18 17 38 38 H 1.09005 * 109.47117 * 330.00330 * 19 18 17 39 39 H 1.08008 * 120.14315 * 180.02562 * 22 21 20 40 40 H 0.97002 * 120.50639 * 195.50593 * 23 21 20 41 41 H 1.09010 * 109.43862 * 208.54998 * 26 24 23 42 42 H 1.09001 * 109.41690 * 88.64542 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1869 1.1805 0.0000 4 6 3.5963 1.1790 -0.0005 5 6 4.3049 2.3979 -0.0011 6 1 3.8750 3.2723 -0.4672 7 6 5.5654 2.4749 0.6026 8 7 6.3723 3.4617 0.3086 9 14 6.0954 1.1686 1.8281 10 1 6.8951 0.1302 1.1298 11 1 6.9190 1.7944 2.8935 12 1 4.8934 0.5425 2.4351 13 6 4.2950 -0.0453 -0.0016 14 6 3.6058 -1.2200 0.0033 15 6 2.2057 -1.2130 -0.0005 16 6 1.4624 -2.4914 0.0000 17 6 1.7822 -3.4870 -0.9267 18 6 1.0943 -4.6823 -0.9231 19 6 1.4462 -5.7563 -1.9199 20 6 0.0787 -4.8965 -0.0036 21 6 -0.2498 -3.9029 0.9215 22 6 0.4363 -2.7039 0.9239 23 7 -1.2812 -4.1378 1.8421 24 6 -1.7151 -5.4031 2.0302 25 8 -2.6259 -5.6265 2.7994 26 6 -1.0622 -6.5365 1.2806 27 8 -0.6050 -6.0714 0.0085 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6470 2.1158 0.0004 32 1 7.2460 3.5149 0.7267 33 1 5.3750 -0.0517 -0.0016 34 1 4.1401 -2.1585 0.0067 35 1 2.5724 -3.3220 -1.6442 36 1 2.2133 -6.4060 -1.4984 37 1 0.5577 -6.3446 -2.1492 38 1 1.8223 -5.2953 -2.8332 39 1 0.1829 -1.9355 1.6393 40 1 -1.6767 -3.4029 2.3366 41 1 -1.7851 -7.3393 1.1353 42 1 -0.2151 -6.9107 1.8556 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244066896.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:26 Heat of formation + Delta-G solvation = -38.696468 kcal Electronic energy + Delta-G solvation = -26313.209874 eV Core-core repulsion = 22608.320444 eV Total energy + Delta-G solvation = -3704.889430 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.46515 -39.23159 -38.39135 -37.15916 -35.47949 -34.18621 -32.57463 -31.65951 -30.69764 -29.43371 -27.77563 -27.02094 -26.26829 -25.18975 -23.22024 -21.67862 -20.90431 -20.55705 -19.40210 -18.75630 -17.55216 -17.17995 -17.01041 -16.25218 -15.88118 -15.28659 -15.04259 -14.77853 -14.47200 -14.19008 -13.80341 -13.67006 -13.59447 -13.21870 -12.94997 -12.85055 -12.77735 -12.56998 -12.36868 -12.15613 -11.90046 -11.71120 -11.50778 -11.23941 -11.06332 -10.89132 -10.84034 -10.44631 -10.28477 -10.23099 -9.91719 -9.68151 -9.27794 -8.39359 -8.06122 -7.77821 -7.33239 -7.13733 -4.62446 1.07949 1.29459 2.12115 2.46381 2.60878 2.66757 3.00803 3.12631 3.20845 3.22528 3.78525 3.85128 3.86444 4.33480 4.63063 4.71503 4.87236 5.04412 5.19349 5.26435 5.42873 5.45288 5.52795 5.63803 5.72123 5.75182 5.84067 5.99333 6.04209 6.08077 6.12040 6.29293 6.36872 6.42173 6.48232 6.61665 6.70050 6.75446 6.80280 6.84644 7.03222 7.26967 7.34866 7.52122 7.61707 7.67120 7.74702 7.96442 8.18128 8.50817 8.62402 9.87261 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019983 B = 0.003155 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.854827 B = 8872.476141 C = 9218.376443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.027 4.027 3 C -0.211 4.211 4 C 0.101 3.899 5 C -0.434 4.434 6 H 0.093 0.907 7 C 0.083 3.917 8 N -0.797 5.797 9 Si 0.915 3.085 10 H -0.268 1.268 11 H -0.290 1.290 12 H -0.243 1.243 13 C -0.245 4.245 14 C -0.046 4.046 15 C -0.208 4.208 16 C 0.033 3.967 17 C -0.118 4.118 18 C -0.068 4.068 19 C -0.106 4.106 20 C 0.045 3.955 21 C 0.095 3.905 22 C -0.133 4.133 23 N -0.656 5.656 24 C 0.491 3.509 25 O -0.524 6.524 26 C 0.051 3.949 27 O -0.302 6.302 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.288 0.712 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.132 0.868 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.131 0.869 40 H 0.415 0.585 41 H 0.141 0.859 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.999 -14.971 -0.119 16.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.027 4.027 3 C -0.230 4.230 4 C 0.098 3.902 5 C -0.462 4.462 6 H 0.111 0.889 7 C -0.138 4.138 8 N -0.420 5.420 9 Si 0.741 3.259 10 H -0.194 1.194 11 H -0.217 1.217 12 H -0.166 1.166 13 C -0.264 4.264 14 C -0.064 4.064 15 C -0.209 4.209 16 C 0.033 3.967 17 C -0.137 4.137 18 C -0.069 4.069 19 C -0.162 4.162 20 C -0.001 4.001 21 C 0.000 4.000 22 C -0.153 4.153 23 N -0.303 5.303 24 C 0.278 3.722 25 O -0.399 6.399 26 C -0.027 4.027 27 O -0.217 6.217 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.150 0.850 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.149 0.851 40 H 0.254 0.746 41 H 0.158 0.842 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.283 -15.186 0.083 17.298 hybrid contribution 0.312 0.196 1.042 1.105 sum -7.971 -14.990 1.125 17.015 Atomic orbital electron populations 1.20859 0.93441 1.01639 1.00898 1.19177 0.93789 0.92600 0.97137 1.20565 0.93789 0.95783 1.12866 1.17772 0.91947 0.92586 0.87889 1.19574 0.99315 0.97096 1.30170 0.88909 1.26269 0.94922 0.96197 0.96418 1.69687 1.07603 1.29854 1.34819 0.86252 0.80010 0.79991 0.79688 1.19425 1.21712 1.16574 1.20709 0.98238 0.92817 1.14608 1.20353 0.92583 0.96700 0.96773 1.17779 0.92200 0.89688 1.21238 1.18686 0.92662 0.93517 0.91876 1.21137 1.00704 0.92110 0.99738 1.19179 0.93162 0.96807 0.97748 1.20635 1.02023 0.96583 0.97002 1.18305 0.96982 0.85354 0.99429 1.17893 0.92743 0.96066 0.93251 1.20843 0.97803 0.95396 1.01267 1.43724 1.35897 1.09502 1.41179 1.21574 0.83390 0.84872 0.82394 1.90791 1.28498 1.83672 1.36977 1.23087 1.00484 0.94841 0.84275 1.86168 1.70310 1.36734 1.28472 0.92420 0.92492 0.92222 0.88032 0.90109 0.88102 0.88599 0.84994 0.91283 0.91167 0.91306 0.85076 0.74650 0.84174 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 8.42 36.00 0.30 -1.42 16 2 C -0.03 -0.52 5.83 -104.69 -0.61 -1.13 16 3 C -0.21 -4.57 9.36 -39.28 -0.37 -4.94 16 4 C 0.10 2.41 5.10 -106.80 -0.54 1.86 16 5 C -0.43 -11.08 9.55 -37.89 -0.36 -11.44 16 6 H 0.09 2.48 8.06 -52.48 -0.42 2.05 16 7 C 0.08 2.05 5.40 -17.34 -0.09 1.96 16 8 N -0.80 -20.17 13.93 55.55 0.77 -19.39 16 9 Si 0.91 19.77 24.51 -169.99 -4.17 15.60 16 10 H -0.27 -5.61 6.70 56.52 0.38 -5.23 16 11 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.24 -5.40 6.87 56.52 0.39 -5.01 16 13 C -0.24 -5.51 7.11 -39.28 -0.28 -5.78 16 14 C -0.05 -0.92 9.43 -39.65 -0.37 -1.29 16 15 C -0.21 -3.92 5.50 -104.63 -0.57 -4.50 16 16 C 0.03 0.53 4.72 -104.85 -0.49 0.04 16 17 C -0.12 -1.68 9.14 -39.15 -0.36 -2.04 16 18 C -0.07 -0.87 5.88 -104.59 -0.62 -1.48 16 19 C -0.11 -1.06 9.80 36.00 0.35 -0.71 16 20 C 0.04 0.59 6.42 -38.88 -0.25 0.34 16 21 C 0.10 1.26 6.54 -83.51 -0.55 0.71 16 22 C -0.13 -1.89 7.77 -39.07 -0.30 -2.20 16 23 N -0.66 -7.89 5.47 -9.68 -0.05 -7.94 16 24 C 0.49 6.03 7.94 -10.82 -0.09 5.94 16 25 O -0.52 -7.80 17.95 5.55 0.10 -7.70 16 26 C 0.05 0.49 7.16 36.03 0.26 0.75 16 27 O -0.30 -3.55 9.52 -19.54 -0.19 -3.74 16 28 H 0.06 0.80 7.46 -51.93 -0.39 0.41 16 29 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 30 H 0.06 0.88 6.43 -51.93 -0.33 0.55 16 31 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 32 H 0.29 6.58 8.30 -40.82 -0.34 6.24 16 33 H 0.10 2.27 4.73 -52.49 -0.25 2.02 16 34 H 0.10 1.70 8.03 -52.49 -0.42 1.27 16 35 H 0.13 1.78 8.04 -52.49 -0.42 1.35 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.68 7.55 -51.93 -0.39 0.29 16 38 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 39 H 0.13 1.79 6.80 -52.48 -0.36 1.43 16 40 H 0.41 4.37 8.89 -40.82 -0.36 4.01 16 41 H 0.14 1.00 8.14 -51.92 -0.42 0.58 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 346.06 15.07 5.21 5.21 Total: -1.00 -27.83 346.06 -8.31 -36.14 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -5.05 Total: 7.13 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -4.95 Total: -25.32 kcal Atomic # 7 Polarization: -28.05 SS G_CDS: 0.72 Total: -27.33 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -0.09 Total: -11.44 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.17 Total: 15.60 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.83 -8.31 -36.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244066896.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.559 kcal (2) G-P(sol) polarization free energy of solvation -27.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds