Wall clock time and date at job start Tue Mar 31 2020 14:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36224 * 120.05705 * 2 1 4 4 C 1.39978 * 120.11571 * 180.24830 * 3 2 1 5 5 C 1.47881 * 119.88974 * 179.71413 * 4 3 2 6 6 C 1.39718 * 120.05764 * 180.02562 * 5 4 3 7 7 C 1.37904 * 120.11567 * 179.97438 * 6 5 4 8 8 C 1.50699 * 119.96973 * 180.02562 * 7 6 5 9 9 C 1.38676 * 120.06532 * 0.05962 * 7 6 5 10 10 C 1.39678 * 120.09711 * 359.97438 * 9 7 6 11 11 C 1.38152 * 120.11932 * 359.65437 * 10 9 7 12 12 N 1.40228 * 119.24827 * 179.91133 * 10 9 7 13 13 C 1.35069 * 118.98641 * 15.52915 * 12 10 9 14 14 O 1.21293 * 120.13808 * 181.63154 * 13 12 10 15 15 C 1.50758 * 119.73037 * 1.65854 * 13 12 10 16 16 O 1.35932 * 120.52014 * 180.02562 * 9 7 6 17 17 C 1.40022 * 120.22913 * 359.73912 * 4 3 2 18 18 C 1.36200 * 120.11150 * 359.97438 * 17 4 3 19 19 C 1.40928 * 120.05826 * 179.70967 * 2 1 3 20 20 C 1.40999 * 120.11395 * 0.03073 * 19 2 1 21 21 H 1.07997 * 120.00038 * 26.47286 * 20 19 2 22 22 C 1.39971 * 119.99871 * 206.47643 * 20 19 2 23 23 N 1.30821 * 119.99912 * 16.22801 * 22 20 19 24 24 Si 1.86798 * 119.99887 * 196.22696 * 22 20 19 25 25 H 1.48495 * 109.47491 * 265.18837 * 24 22 20 26 26 H 1.48506 * 109.47050 * 25.18970 * 24 22 20 27 27 H 1.48505 * 109.46932 * 145.18907 * 24 22 20 28 28 H 1.08996 * 109.47658 * 270.28718 * 1 2 3 29 29 H 1.09006 * 109.47314 * 30.29150 * 1 2 3 30 30 H 1.09003 * 109.46943 * 150.28592 * 1 2 3 31 31 H 1.08005 * 119.94634 * 359.97438 * 3 2 1 32 32 H 1.08006 * 119.94263 * 359.97438 * 6 5 4 33 33 H 1.09003 * 109.46811 * 90.00319 * 8 7 6 34 34 H 1.08997 * 109.47587 * 209.99840 * 8 7 6 35 35 H 1.08997 * 109.47066 * 330.00702 * 8 7 6 36 36 H 1.07994 * 120.14680 * 180.33145 * 11 10 9 37 37 H 0.97003 * 120.50431 * 195.50791 * 12 10 9 38 38 H 1.08996 * 109.44503 * 208.55338 * 15 13 12 39 39 H 1.09000 * 109.41630 * 88.63452 * 15 13 12 40 40 H 1.07993 * 119.94381 * 179.97438 * 17 4 3 41 41 H 1.08003 * 120.05577 * 180.02562 * 18 17 4 42 42 H 0.97004 * 119.99707 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1893 1.1791 0.0000 4 6 3.5890 1.1805 -0.0052 5 6 4.3247 2.4633 -0.0116 6 6 5.7218 2.4689 -0.0174 7 6 6.4090 3.6645 -0.0239 8 6 7.9160 3.6666 -0.0307 9 6 5.7146 4.8649 -0.0234 10 6 4.3179 4.8662 -0.0169 11 6 3.6235 3.6718 -0.0182 12 7 3.6338 6.0903 -0.0147 13 6 4.3068 7.2167 -0.3350 14 8 3.7432 8.2905 -0.3110 15 6 5.7612 7.1340 -0.7231 16 8 6.3826 6.0488 -0.0303 17 6 4.2953 -0.0286 -0.0050 18 6 3.6225 -1.2128 0.0009 19 6 2.2129 -1.2197 0.0062 20 6 1.5115 -2.4429 0.0117 21 1 0.5169 -2.4970 -0.4054 22 6 2.1045 -3.5871 0.5579 23 7 3.1499 -3.4740 1.3363 24 14 1.4032 -5.2757 0.1754 25 1 0.4624 -5.6765 1.2521 26 1 0.6809 -5.2295 -1.1213 27 1 2.5089 -6.2634 0.0913 28 1 -0.3634 0.0052 1.0276 29 1 -0.3634 0.8874 -0.5184 30 1 -0.3633 -0.8926 -0.5094 31 1 1.6493 2.1144 -0.0004 32 1 6.2646 1.5351 -0.0168 33 1 8.2746 3.6643 -1.0600 34 1 8.2804 4.5585 0.4789 35 1 8.2829 2.7786 0.4839 36 1 2.5436 3.6723 -0.0186 37 1 2.6917 6.1274 0.2131 38 1 6.2607 8.0663 -0.4596 39 1 5.8407 6.9708 -1.7978 40 1 5.3752 -0.0221 -0.0095 41 1 4.1681 -2.1449 0.0015 42 1 3.5606 -4.2669 1.7151 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244066920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:19 Heat of formation + Delta-G solvation = -39.218639 kcal Electronic energy + Delta-G solvation = -25966.638652 eV Core-core repulsion = 22261.726580 eV Total energy + Delta-G solvation = -3704.912073 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.30911 -39.03125 -38.18784 -37.06514 -35.37180 -34.08247 -32.51746 -31.49619 -30.04512 -29.20050 -27.63915 -27.05256 -26.10957 -24.84445 -23.22798 -22.05393 -20.74486 -19.99202 -18.99170 -18.64658 -17.49937 -17.30714 -16.76857 -16.06242 -15.71127 -15.18196 -15.02512 -14.58325 -14.43630 -13.92915 -13.62313 -13.50050 -13.45275 -12.94564 -12.79271 -12.77815 -12.56867 -12.37986 -11.96848 -11.91979 -11.58612 -11.47617 -11.31176 -11.23935 -11.06977 -10.95544 -10.81457 -10.63460 -10.25757 -10.05361 -9.71192 -9.48103 -9.35531 -8.36982 -7.98308 -7.57973 -7.10382 -6.94642 -4.51774 1.18543 1.41842 2.22915 2.66360 2.77102 2.93006 2.94603 2.97253 3.05765 3.39375 3.73449 3.96442 4.02231 4.54251 4.77081 4.82769 4.97753 5.19648 5.36828 5.46637 5.56441 5.57484 5.67961 5.75615 5.84547 6.05109 6.14976 6.15560 6.21468 6.26802 6.47750 6.54831 6.57014 6.58245 6.70144 6.84702 6.87129 6.88955 6.98280 7.08030 7.25530 7.44910 7.46450 7.71700 7.73857 7.83253 7.93965 8.06978 8.39049 8.62207 8.73944 9.90278 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023394 B = 0.002826 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.584032 B = 9904.200251 C =10990.314178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.201 4.201 3 C -0.058 4.058 4 C -0.206 4.206 5 C 0.044 3.956 6 C -0.138 4.138 7 C -0.059 4.059 8 C -0.105 4.105 9 C 0.026 3.974 10 C 0.105 3.895 11 C -0.156 4.156 12 N -0.656 5.656 13 C 0.491 3.509 14 O -0.527 6.527 15 C 0.052 3.948 16 O -0.303 6.303 17 C -0.074 4.074 18 C -0.169 4.169 19 C 0.126 3.874 20 C -0.441 4.441 21 H 0.086 0.914 22 C 0.073 3.927 23 N -0.776 5.776 24 Si 0.910 3.090 25 H -0.268 1.268 26 H -0.258 1.258 27 H -0.273 1.273 28 H 0.046 0.954 29 H 0.037 0.963 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.132 0.868 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.129 0.871 37 H 0.414 0.586 38 H 0.139 0.861 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.118 0.882 42 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.178 8.953 -2.864 10.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.202 4.202 3 C -0.076 4.076 4 C -0.207 4.207 5 C 0.043 3.957 6 C -0.156 4.156 7 C -0.060 4.060 8 C -0.162 4.162 9 C -0.019 4.019 10 C 0.010 3.990 11 C -0.177 4.177 12 N -0.302 5.302 13 C 0.278 3.722 14 O -0.403 6.403 15 C -0.027 4.027 16 O -0.218 6.218 17 C -0.092 4.092 18 C -0.188 4.188 19 C 0.123 3.877 20 C -0.468 4.468 21 H 0.104 0.896 22 C -0.147 4.147 23 N -0.400 5.400 24 Si 0.734 3.266 25 H -0.193 1.193 26 H -0.182 1.182 27 H -0.198 1.198 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.150 0.850 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.147 0.853 37 H 0.252 0.748 38 H 0.156 0.844 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.136 0.864 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.387 9.484 -2.659 11.226 hybrid contribution -0.995 -0.766 0.022 1.256 sum 4.392 8.717 -2.637 10.111 Atomic orbital electron populations 1.20412 0.93364 1.00251 1.00136 1.19441 0.94537 0.93023 1.13210 1.20246 0.92789 0.96060 0.98553 1.17938 0.92415 0.90231 1.20123 1.18772 0.92185 0.92341 0.92389 1.21000 0.93524 0.96689 1.04410 1.19132 0.96104 0.89813 1.00975 1.20629 0.90569 1.02783 1.02220 1.18203 0.87674 0.85614 1.10421 1.17860 0.90442 0.85656 1.05025 1.20623 0.99794 0.89606 1.07641 1.43725 1.14001 1.05647 1.66871 1.21598 0.90496 0.83531 0.76587 1.90781 1.70384 1.27449 1.51669 1.23051 0.88955 0.91895 0.98775 1.86157 1.46147 1.17202 1.72263 1.20514 0.97432 0.92328 0.98950 1.20964 0.94425 0.96669 1.06786 1.17604 0.91960 0.91703 0.86455 1.19762 1.02294 0.92668 1.32120 0.89579 1.26033 0.94150 1.01814 0.92744 1.69816 1.17507 1.32473 1.20197 0.86249 0.79629 0.80446 0.80285 1.19314 1.18182 1.19780 0.93519 0.94381 0.92308 0.89035 0.85032 0.91365 0.91242 0.91408 0.85319 0.74760 0.84354 0.88877 0.88819 0.86375 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.62 9.61 36.01 0.35 -1.27 16 2 C -0.20 -4.45 5.90 -104.33 -0.62 -5.07 16 3 C -0.06 -1.21 8.99 -39.65 -0.36 -1.56 16 4 C -0.21 -4.22 5.90 -104.63 -0.62 -4.83 16 5 C 0.04 0.78 5.88 -104.85 -0.62 0.16 16 6 C -0.14 -2.19 9.07 -39.15 -0.36 -2.55 16 7 C -0.06 -0.85 5.88 -104.58 -0.62 -1.47 16 8 C -0.11 -1.19 9.80 36.01 0.35 -0.84 16 9 C 0.03 0.39 6.42 -38.88 -0.25 0.14 16 10 C 0.10 1.55 6.54 -83.51 -0.55 1.01 16 11 C -0.16 -2.49 9.32 -39.06 -0.36 -2.85 16 12 N -0.66 -8.70 5.47 -9.68 -0.05 -8.75 16 13 C 0.49 6.56 7.94 -10.83 -0.09 6.47 16 14 O -0.53 -8.33 17.95 5.55 0.10 -8.23 16 15 C 0.05 0.55 7.16 36.03 0.26 0.81 16 16 O -0.30 -3.96 9.52 -19.53 -0.19 -4.15 16 17 C -0.07 -1.58 9.36 -39.65 -0.37 -1.95 16 18 C -0.17 -4.02 8.61 -39.28 -0.34 -4.36 16 19 C 0.13 3.05 5.55 -106.80 -0.59 2.45 16 20 C -0.44 -10.52 8.43 -37.89 -0.32 -10.84 16 21 H 0.09 1.96 6.25 -52.49 -0.33 1.63 16 22 C 0.07 1.66 5.15 -17.33 -0.09 1.57 16 23 N -0.78 -18.35 11.00 55.55 0.61 -17.74 16 24 Si 0.91 16.99 29.59 -169.99 -5.03 11.97 16 25 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 26 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 27 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.04 0.63 8.08 -51.93 -0.42 0.21 16 30 H 0.06 1.11 6.25 -51.93 -0.32 0.78 16 31 H 0.09 1.66 6.17 -52.48 -0.32 1.34 16 32 H 0.13 1.98 6.16 -52.48 -0.32 1.66 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.76 7.55 -51.93 -0.39 0.37 16 35 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 36 H 0.13 1.91 6.18 -52.49 -0.32 1.59 16 37 H 0.41 4.84 8.89 -40.82 -0.36 4.48 16 38 H 0.14 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 1.77 6.16 -52.49 -0.32 1.45 16 41 H 0.12 2.88 6.25 -52.48 -0.33 2.56 16 42 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 LS Contribution 347.25 15.07 5.23 5.23 Total: -1.00 -27.10 347.25 -9.20 -36.30 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -4.70 Total: 10.35 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -5.18 Total: -24.98 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.56 Total: -26.49 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -0.09 Total: -12.38 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.97 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.10 -9.20 -36.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244066920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.919 kcal (2) G-P(sol) polarization free energy of solvation -27.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds