Wall clock time and date at job start Tue Mar 31 2020 14:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36224 * 120.05705 * 2 1 4 4 C 1.39978 * 120.11571 * 180.24830 * 3 2 1 5 5 C 1.47881 * 119.88974 * 179.71413 * 4 3 2 6 6 C 1.39718 * 120.05764 * 180.02562 * 5 4 3 7 7 C 1.37904 * 120.11567 * 179.97438 * 6 5 4 8 8 C 1.50699 * 119.96973 * 180.02562 * 7 6 5 9 9 C 1.38676 * 120.06532 * 0.05962 * 7 6 5 10 10 C 1.39678 * 120.09711 * 359.97438 * 9 7 6 11 11 C 1.38152 * 120.11932 * 359.65437 * 10 9 7 12 12 N 1.40228 * 119.24827 * 179.91133 * 10 9 7 13 13 C 1.35069 * 118.98641 * 15.52915 * 12 10 9 14 14 O 1.21293 * 120.13808 * 181.63154 * 13 12 10 15 15 C 1.50758 * 119.73037 * 1.65854 * 13 12 10 16 16 O 1.35932 * 120.52014 * 180.02562 * 9 7 6 17 17 C 1.40022 * 120.22913 * 359.73912 * 4 3 2 18 18 C 1.36200 * 120.11150 * 359.97438 * 17 4 3 19 19 C 1.40928 * 120.05826 * 179.70967 * 2 1 3 20 20 C 1.40999 * 120.11395 * 0.03073 * 19 2 1 21 21 H 1.07997 * 120.00038 * 26.47286 * 20 19 2 22 22 C 1.39971 * 119.99871 * 206.47643 * 20 19 2 23 23 N 1.30821 * 119.99912 * 16.22801 * 22 20 19 24 24 Si 1.86798 * 119.99887 * 196.22696 * 22 20 19 25 25 H 1.48495 * 109.47491 * 265.18837 * 24 22 20 26 26 H 1.48506 * 109.47050 * 25.18970 * 24 22 20 27 27 H 1.48505 * 109.46932 * 145.18907 * 24 22 20 28 28 H 1.08996 * 109.47658 * 270.28718 * 1 2 3 29 29 H 1.09006 * 109.47314 * 30.29150 * 1 2 3 30 30 H 1.09003 * 109.46943 * 150.28592 * 1 2 3 31 31 H 1.08005 * 119.94634 * 359.97438 * 3 2 1 32 32 H 1.08006 * 119.94263 * 359.97438 * 6 5 4 33 33 H 1.09003 * 109.46811 * 90.00319 * 8 7 6 34 34 H 1.08997 * 109.47587 * 209.99840 * 8 7 6 35 35 H 1.08997 * 109.47066 * 330.00702 * 8 7 6 36 36 H 1.07994 * 120.14680 * 180.33145 * 11 10 9 37 37 H 0.97003 * 120.50431 * 195.50791 * 12 10 9 38 38 H 1.08996 * 109.44503 * 208.55338 * 15 13 12 39 39 H 1.09000 * 109.41630 * 88.63452 * 15 13 12 40 40 H 1.07993 * 119.94381 * 179.97438 * 17 4 3 41 41 H 1.08003 * 120.05577 * 180.02562 * 18 17 4 42 42 H 0.97004 * 119.99707 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1893 1.1791 0.0000 4 6 3.5890 1.1805 -0.0052 5 6 4.3247 2.4633 -0.0116 6 6 5.7218 2.4689 -0.0174 7 6 6.4090 3.6645 -0.0239 8 6 7.9160 3.6666 -0.0307 9 6 5.7146 4.8649 -0.0234 10 6 4.3179 4.8662 -0.0169 11 6 3.6235 3.6718 -0.0182 12 7 3.6338 6.0903 -0.0147 13 6 4.3068 7.2167 -0.3350 14 8 3.7432 8.2905 -0.3110 15 6 5.7612 7.1340 -0.7231 16 8 6.3826 6.0488 -0.0303 17 6 4.2953 -0.0286 -0.0050 18 6 3.6225 -1.2128 0.0009 19 6 2.2129 -1.2197 0.0062 20 6 1.5115 -2.4429 0.0117 21 1 0.5169 -2.4970 -0.4054 22 6 2.1045 -3.5871 0.5579 23 7 3.1499 -3.4740 1.3363 24 14 1.4032 -5.2757 0.1754 25 1 0.4624 -5.6765 1.2521 26 1 0.6809 -5.2295 -1.1213 27 1 2.5089 -6.2634 0.0913 28 1 -0.3634 0.0052 1.0276 29 1 -0.3634 0.8874 -0.5184 30 1 -0.3633 -0.8926 -0.5094 31 1 1.6493 2.1144 -0.0004 32 1 6.2646 1.5351 -0.0168 33 1 8.2746 3.6643 -1.0600 34 1 8.2804 4.5585 0.4789 35 1 8.2829 2.7786 0.4839 36 1 2.5436 3.6723 -0.0186 37 1 2.6917 6.1274 0.2131 38 1 6.2607 8.0663 -0.4596 39 1 5.8407 6.9708 -1.7978 40 1 5.3752 -0.0221 -0.0095 41 1 4.1681 -2.1449 0.0015 42 1 3.5606 -4.2669 1.7151 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244066920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:18 Heat of formation + Delta-G solvation = -52.723071 kcal Electronic energy + Delta-G solvation = -25967.224249 eV Core-core repulsion = 22261.726580 eV Total energy + Delta-G solvation = -3705.497669 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.41412 -40.32008 -39.58651 -38.31996 -36.51423 -35.66416 -33.93612 -32.94332 -31.42052 -30.49760 -28.77977 -28.37649 -27.45238 -26.38379 -24.49031 -23.48238 -22.00005 -21.51885 -20.31009 -19.74714 -19.11023 -18.45462 -17.87912 -17.31988 -17.18925 -16.49762 -16.21976 -15.78860 -15.63238 -15.42580 -15.05081 -14.83274 -14.57706 -14.32077 -14.22452 -14.00834 -13.84201 -13.49586 -13.48101 -13.10295 -12.97463 -12.83074 -12.80421 -12.72733 -12.46294 -12.25577 -12.14767 -12.00557 -11.57054 -11.37473 -11.22303 -11.07154 -10.96854 -9.70563 -9.25492 -9.23250 -8.71052 -8.47892 -6.25997 -0.08310 0.19981 1.00051 1.20863 1.28744 1.39978 1.52103 1.58494 1.73177 2.19093 2.33431 2.59939 2.94896 3.00675 3.64146 3.76521 3.93259 4.04214 4.18084 4.21631 4.29947 4.40764 4.46396 4.57117 4.60118 4.72160 4.89450 4.89896 4.91875 5.00295 5.04175 5.13507 5.22791 5.28012 5.28513 5.39641 5.43644 5.53620 5.66682 5.71182 5.76621 5.80479 6.06984 6.13780 6.27730 6.34271 6.38112 6.67609 6.68448 6.91342 7.04028 8.28348 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023394 B = 0.002826 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.584032 B = 9904.200251 C =10990.314178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.216 4.216 3 C -0.071 4.071 4 C -0.195 4.195 5 C 0.014 3.986 6 C -0.136 4.136 7 C -0.062 4.062 8 C -0.103 4.103 9 C 0.037 3.963 10 C 0.102 3.898 11 C -0.151 4.151 12 N -0.654 5.654 13 C 0.489 3.511 14 O -0.553 6.553 15 C 0.051 3.949 16 O -0.303 6.303 17 C -0.084 4.084 18 C -0.192 4.192 19 C 0.092 3.908 20 C -0.478 4.478 21 H 0.086 0.914 22 C 0.035 3.965 23 N -0.816 5.816 24 Si 0.978 3.022 25 H -0.264 1.264 26 H -0.257 1.257 27 H -0.268 1.268 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.117 0.883 32 H 0.136 0.864 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.137 0.863 37 H 0.419 0.581 38 H 0.169 0.831 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.101 0.899 42 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.245 11.233 -3.421 13.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.217 4.217 3 C -0.089 4.089 4 C -0.196 4.196 5 C 0.013 3.987 6 C -0.154 4.154 7 C -0.063 4.063 8 C -0.160 4.160 9 C -0.009 4.009 10 C 0.007 3.993 11 C -0.171 4.171 12 N -0.301 5.301 13 C 0.278 3.722 14 O -0.431 6.431 15 C -0.026 4.026 16 O -0.218 6.218 17 C -0.102 4.102 18 C -0.212 4.212 19 C 0.089 3.911 20 C -0.506 4.506 21 H 0.104 0.896 22 C -0.181 4.181 23 N -0.441 5.441 24 Si 0.799 3.201 25 H -0.188 1.188 26 H -0.181 1.181 27 H -0.192 1.192 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.135 0.865 32 H 0.154 0.846 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.155 0.845 37 H 0.259 0.741 38 H 0.186 0.814 39 H 0.136 0.864 40 H 0.131 0.869 41 H 0.119 0.881 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.454 11.784 -3.218 13.815 hybrid contribution -1.151 -1.033 0.177 1.557 sum 5.303 10.751 -3.041 12.367 Atomic orbital electron populations 1.20393 0.91524 1.01204 1.00550 1.19860 0.96234 0.92929 1.12707 1.20560 0.93202 0.96662 0.98519 1.18277 0.92760 0.91214 1.17339 1.18711 0.93008 0.91631 0.95383 1.21126 0.92951 0.97737 1.03611 1.19422 0.97816 0.89070 1.00005 1.20697 0.88175 1.03634 1.03488 1.18413 0.87682 0.86501 1.08294 1.17840 0.90710 0.85771 1.04974 1.20669 1.00283 0.89456 1.06716 1.43750 1.14431 1.05243 1.66644 1.22098 0.91488 0.82890 0.75764 1.90780 1.71222 1.28248 1.52834 1.23390 0.87121 0.92105 1.00001 1.86165 1.46028 1.16949 1.72615 1.20745 0.98541 0.92111 0.98842 1.20953 0.94738 0.96871 1.08613 1.17951 0.92475 0.92901 0.87764 1.19925 1.02811 0.93678 1.34207 0.89630 1.26782 0.94342 1.04949 0.92059 1.69873 1.19109 1.33486 1.21607 0.85238 0.78902 0.76027 0.79920 1.18838 1.18084 1.19207 0.93283 0.91873 0.92811 0.86500 0.84595 0.89781 0.90534 0.90475 0.84544 0.74141 0.81381 0.86385 0.86934 0.88143 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.06 9.61 71.24 0.68 -2.37 16 2 C -0.22 -9.78 5.90 -19.68 -0.12 -9.90 16 3 C -0.07 -2.95 8.99 22.22 0.20 -2.75 16 4 C -0.19 -7.96 5.90 -19.87 -0.12 -8.07 16 5 C 0.01 0.46 5.88 -20.01 -0.12 0.34 16 6 C -0.14 -4.07 9.07 22.55 0.20 -3.87 16 7 C -0.06 -1.60 5.88 -19.84 -0.12 -1.72 16 8 C -0.10 -1.98 9.80 71.24 0.70 -1.28 16 9 C 0.04 0.97 6.42 22.72 0.15 1.11 16 10 C 0.10 2.75 6.54 38.12 0.25 3.00 16 11 C -0.15 -4.51 9.32 22.61 0.21 -4.30 16 12 N -0.65 -15.67 5.47 -302.76 -1.66 -17.33 16 13 C 0.49 11.62 7.94 87.63 0.70 12.31 16 14 O -0.55 -16.18 17.95 -3.07 -0.06 -16.23 16 15 C 0.05 0.88 7.16 71.25 0.51 1.39 16 16 O -0.30 -6.70 9.52 -92.79 -0.88 -7.58 16 17 C -0.08 -3.69 9.36 22.23 0.21 -3.48 16 18 C -0.19 -9.61 8.61 22.46 0.19 -9.42 16 19 C 0.09 4.65 5.55 -21.28 -0.12 4.54 16 20 C -0.48 -24.00 8.43 23.37 0.20 -23.80 16 21 H 0.09 4.10 6.25 -2.91 -0.02 4.08 16 22 C 0.03 1.66 5.15 85.26 0.44 2.10 16 23 N -0.82 -40.57 11.00 21.83 0.24 -40.33 16 24 Si 0.98 36.04 29.59 68.60 2.03 38.07 16 25 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 26 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 27 H -0.27 -9.47 7.11 99.48 0.71 -8.77 16 28 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.06 2.03 8.08 -2.38 -0.02 2.01 16 30 H 0.05 2.07 6.25 -2.39 -0.01 2.06 16 31 H 0.12 4.09 6.17 -2.91 -0.02 4.07 16 32 H 0.14 3.89 6.16 -2.91 -0.02 3.87 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.38 7.55 -2.39 -0.02 1.36 16 35 H 0.08 1.35 8.08 -2.39 -0.02 1.33 16 36 H 0.14 3.78 6.18 -2.91 -0.02 3.76 16 37 H 0.42 8.93 8.89 -92.71 -0.82 8.10 16 38 H 0.17 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.11 4.32 6.16 -2.91 -0.02 4.30 16 41 H 0.10 5.26 6.25 -2.91 -0.02 5.24 16 42 H 0.29 13.02 8.30 -92.71 -0.77 12.25 16 Total: -1.00 -60.56 347.25 4.00 -56.56 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: 0.27 Total: 33.01 kcal Atomic # 6 Polarization: -50.22 SS G_CDS: 4.05 Total: -46.17 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -1.42 Total: -57.66 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.94 Total: -23.81 kcal Atomic # 14 Polarization: 36.04 SS G_CDS: 2.03 Total: 38.07 kcal Total: -60.56 4.00 -56.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244066920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.840 kcal (2) G-P(sol) polarization free energy of solvation -60.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds