Wall clock time and date at job start Tue Mar 31 2020 13:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99817 * 2 1 4 4 O 1.42893 * 109.47308 * 75.00010 * 3 2 1 5 5 C 1.35778 * 117.00149 * 74.99928 * 4 3 2 6 6 C 1.38572 * 120.13605 * 359.97438 * 5 4 3 7 7 C 1.38186 * 120.08046 * 180.29949 * 6 5 4 8 8 C 1.38509 * 120.36665 * 359.44189 * 7 6 5 9 9 C 1.50699 * 119.86734 * 180.27638 * 8 7 6 10 10 C 1.37875 * 120.27220 * 0.56222 * 8 7 6 11 11 C 1.39600 * 119.91189 * 359.71739 * 10 8 7 12 12 C 1.47888 * 120.17890 * 179.97438 * 11 10 8 13 13 C 1.40047 * 119.50001 * 130.02553 * 12 11 10 14 14 C 1.35970 * 121.18392 * 180.02562 * 13 12 11 15 15 C 1.41067 * 120.11344 * 359.94608 * 14 13 12 16 16 C 1.40414 * 120.48176 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99767 * 154.62299 * 16 15 14 18 18 C 1.40282 * 120.00209 * 334.63159 * 16 15 14 19 19 N 1.30645 * 119.99838 * 342.97931 * 18 16 15 20 20 Si 1.86799 * 120.00302 * 162.98698 * 18 16 15 21 21 H 1.48498 * 109.47297 * 59.99446 * 20 18 16 22 22 H 1.48496 * 109.47258 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47027 * 299.99576 * 20 18 16 24 24 C 1.46652 * 119.03414 * 0.02839 * 15 14 13 25 25 C 1.43202 * 120.56316 * 179.97438 * 24 15 14 26 26 N 8.74409 * 69.70597 * 63.95464 * 2 1 3 27 27 C 1.39052 * 118.87527 * 359.77110 * 24 15 14 28 28 H 1.08993 * 109.46812 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46950 * 300.00520 * 1 2 3 30 30 H 1.08997 * 109.46713 * 59.99936 * 1 2 3 31 31 H 1.08996 * 109.47088 * 314.99695 * 3 2 1 32 32 H 1.09010 * 109.46709 * 195.00003 * 3 2 1 33 33 H 1.07995 * 119.95789 * 0.02562 * 6 5 4 34 34 H 1.08005 * 119.81863 * 179.72551 * 7 6 5 35 35 H 1.09000 * 109.47600 * 270.28414 * 9 8 7 36 36 H 1.09002 * 109.46732 * 30.28369 * 9 8 7 37 37 H 1.08996 * 109.46977 * 150.27549 * 9 8 7 38 38 H 1.08000 * 120.04887 * 179.74523 * 10 8 7 39 39 H 1.07992 * 119.41022 * 359.97438 * 13 12 11 40 40 H 1.08005 * 119.94080 * 179.97438 * 14 13 12 41 41 H 0.97003 * 120.00470 * 180.02562 * 19 18 16 42 42 H 1.07994 * 120.10213 * 180.22506 * 27 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8854 1.8825 1.3013 5 6 2.7180 1.4136 2.2659 6 6 3.6362 0.4190 1.9693 7 6 4.4787 -0.0616 2.9535 8 6 4.4205 0.4533 4.2380 9 6 5.3490 -0.0748 5.3010 10 6 3.5127 1.4431 4.5495 11 6 2.6520 1.9331 3.5656 12 6 1.6755 2.9943 3.8934 13 6 1.5922 4.1303 3.0787 14 6 0.7074 5.1268 3.3486 15 6 -0.1498 5.0292 4.4647 16 6 -1.0668 6.0534 4.7503 17 1 -1.9654 5.8337 5.3076 18 6 -0.8159 7.3620 4.3115 19 7 0.3883 7.7070 3.9407 20 14 -2.2036 8.6114 4.2577 21 1 -2.7610 8.7912 5.6223 22 1 -1.6815 9.9100 3.7617 23 1 -3.2714 8.1262 3.3468 24 6 -0.0690 3.8424 5.3225 25 6 -0.9232 3.7097 6.4642 26 7 -1.6038 3.6010 7.3684 27 6 0.8480 2.8462 5.0059 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.4942 1.9329 -0.7267 32 1 3.0649 1.2336 -0.2660 33 1 3.6903 0.0160 0.9689 34 1 5.1897 -0.8400 2.7187 35 1 4.8790 -0.9176 5.8080 36 1 6.2807 -0.4021 4.8396 37 1 5.5589 0.7132 6.0242 38 1 3.4676 1.8391 5.5533 39 1 2.2430 4.2169 2.2213 40 1 0.6604 5.9944 2.7070 41 1 0.5620 8.6120 3.6376 42 1 0.9216 1.9622 5.6219 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244405153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:43 Heat of formation + Delta-G solvation = -28.178782 kcal Electronic energy + Delta-G solvation = -26196.435471 eV Core-core repulsion = 22492.002122 eV Total energy + Delta-G solvation = -3704.433349 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.08875 -38.28082 -37.44095 -36.31303 -35.08975 -34.28730 -31.96943 -31.21759 -29.90391 -29.01926 -27.75134 -26.41065 -25.62673 -24.76058 -22.59289 -22.11995 -20.91932 -20.21793 -18.18572 -17.67325 -17.01546 -16.80518 -16.33042 -15.54071 -15.33338 -14.89339 -14.47988 -14.19316 -14.05262 -13.76039 -13.58301 -13.30754 -13.13799 -13.09532 -12.84833 -12.64536 -12.06619 -12.00617 -11.85232 -11.83559 -11.67964 -11.46736 -11.35733 -11.23208 -11.13352 -10.91711 -10.87864 -10.60918 -10.51067 -10.12799 -9.81471 -9.76778 -9.47871 -8.57812 -7.88784 -7.68945 -7.31897 -7.11260 -4.70519 1.61878 1.76701 2.25640 2.68552 2.89182 2.92387 3.05527 3.49156 3.66623 3.69468 3.92355 4.05545 4.29258 4.44912 4.95904 5.04082 5.11799 5.19513 5.27178 5.32041 5.42456 5.46146 5.48462 5.51158 5.72094 5.73046 5.74997 5.91121 5.99890 6.03331 6.10589 6.31699 6.45768 6.63066 6.66498 6.67442 6.84801 6.86892 6.95606 7.05265 7.16142 7.26732 7.54251 7.66393 7.77474 7.86703 7.91759 8.24011 8.41154 8.57854 8.84263 9.71414 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011906 B = 0.003861 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.258360 B = 7249.642174 C = 8263.371328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.399 6.399 3 C 0.209 3.791 4 O -0.312 6.312 5 C 0.117 3.883 6 C -0.191 4.191 7 C -0.107 4.107 8 C -0.121 4.121 9 C -0.106 4.106 10 C -0.092 4.092 11 C -0.016 4.016 12 C -0.190 4.190 13 C -0.039 4.039 14 C -0.169 4.169 15 C 0.157 3.843 16 C -0.425 4.425 17 H 0.086 0.914 18 C 0.076 3.924 19 N -0.758 5.758 20 Si 0.915 3.085 21 H -0.260 1.260 22 H -0.273 1.273 23 H -0.258 1.258 24 C -0.191 4.191 25 C 0.301 3.699 26 N -0.512 5.512 27 C -0.005 4.005 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.126 0.874 39 H 0.093 0.907 40 H 0.124 0.876 41 H 0.292 0.708 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.079 -8.475 -9.133 14.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.319 6.319 3 C 0.096 3.904 4 O -0.227 6.227 5 C 0.072 3.928 6 C -0.210 4.210 7 C -0.125 4.125 8 C -0.122 4.122 9 C -0.163 4.163 10 C -0.111 4.111 11 C -0.016 4.016 12 C -0.191 4.191 13 C -0.059 4.059 14 C -0.188 4.188 15 C 0.152 3.848 16 C -0.452 4.452 17 H 0.104 0.896 18 C -0.147 4.147 19 N -0.379 5.379 20 Si 0.738 3.262 21 H -0.184 1.184 22 H -0.197 1.197 23 H -0.182 1.182 24 C -0.197 4.197 25 C -0.008 4.008 26 N -0.191 5.191 27 C -0.026 4.026 28 H 0.102 0.898 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.142 0.858 34 H 0.132 0.868 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.143 0.857 39 H 0.112 0.888 40 H 0.142 0.858 41 H 0.103 0.897 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.139 -8.444 -7.802 13.033 hybrid contribution -0.297 0.707 -0.631 0.993 sum 5.842 -7.736 -8.433 12.849 Atomic orbital electron populations 1.22803 0.80206 1.02693 1.00931 1.88002 1.21095 1.28946 1.93828 1.24139 0.99207 0.83201 0.83862 1.86347 1.57344 1.59703 1.19278 1.19042 0.90619 0.94170 0.88937 1.21083 0.99204 1.00336 1.00377 1.20649 0.99468 0.99975 0.92454 1.19684 0.99002 0.98468 0.94997 1.20685 0.97666 1.00873 0.97083 1.21041 0.94496 0.96636 0.98886 1.18325 0.96918 0.96781 0.89614 1.17595 1.03572 0.96595 1.01386 1.20378 0.96562 0.92508 0.96408 1.20872 0.99720 0.99487 0.98707 1.18464 0.89573 0.88710 0.88075 1.19747 1.05482 0.92136 1.27863 0.89619 1.26133 0.96577 1.00018 0.92013 1.69716 1.20562 1.20965 1.26706 0.86209 0.81112 0.78419 0.80446 1.18448 1.19727 1.18171 1.16759 1.04824 1.01984 0.96159 1.25822 0.91776 0.91061 0.92153 1.81057 1.12934 1.11444 1.13691 1.20499 0.92629 0.95269 0.94236 0.89827 0.92659 0.93900 0.88161 0.88590 0.85797 0.86762 0.91840 0.92196 0.91818 0.85654 0.88850 0.85832 0.89704 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.89 101.05 1.10 1.43 16 2 O -0.40 -5.10 10.19 -59.04 -0.60 -5.71 16 3 C 0.21 2.50 6.39 101.05 0.65 3.15 16 4 O -0.31 -5.02 8.49 -42.86 -0.36 -5.38 16 5 C 0.12 1.95 6.51 -38.75 -0.25 1.70 16 6 C -0.19 -2.77 8.78 -39.48 -0.35 -3.12 16 7 C -0.11 -1.46 9.69 -39.50 -0.38 -1.84 16 8 C -0.12 -1.71 5.88 -104.66 -0.61 -2.32 16 9 C -0.11 -1.16 10.00 36.01 0.36 -0.80 16 10 C -0.09 -1.50 9.12 -39.21 -0.36 -1.86 16 11 C -0.02 -0.29 5.46 -104.73 -0.57 -0.86 16 12 C -0.19 -3.88 5.29 -104.82 -0.55 -4.44 16 13 C -0.04 -0.83 8.62 -39.72 -0.34 -1.17 16 14 C -0.17 -3.87 8.62 -39.32 -0.34 -4.21 16 15 C 0.16 3.82 5.73 -104.61 -0.60 3.22 16 16 C -0.43 -10.37 8.55 -37.99 -0.32 -10.70 16 17 H 0.09 2.12 7.38 -52.49 -0.39 1.73 16 18 C 0.08 1.72 5.15 -17.29 -0.09 1.63 16 19 N -0.76 -17.22 10.96 55.57 0.61 -16.62 16 20 Si 0.92 17.05 29.59 -169.99 -5.03 12.02 16 21 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 22 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 23 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 24 C -0.19 -4.45 5.93 -104.27 -0.62 -5.07 16 25 C 0.30 7.18 14.30 -22.44 -0.32 6.86 16 26 N -0.51 -12.50 18.54 41.87 0.78 -11.73 16 27 C -0.01 -0.12 9.18 -38.83 -0.36 -0.47 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.71 8.03 -51.93 -0.42 0.29 16 30 H 0.04 0.39 8.11 -51.93 -0.42 -0.03 16 31 H 0.10 0.97 8.01 -51.93 -0.42 0.56 16 32 H 0.10 0.97 6.70 -51.92 -0.35 0.62 16 33 H 0.12 1.58 5.85 -52.49 -0.31 1.27 16 34 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 37 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 38 H 0.13 1.95 8.03 -52.49 -0.42 1.53 16 39 H 0.09 1.84 7.60 -52.49 -0.40 1.44 16 40 H 0.12 2.87 6.20 -52.48 -0.33 2.55 16 41 H 0.29 5.94 8.29 -40.82 -0.34 5.61 16 42 H 0.10 1.90 8.02 -52.49 -0.42 1.48 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -27.11 365.95 -8.17 -35.27 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.11 Total: 5.50 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -3.97 Total: -18.88 kcal Atomic # 7 Polarization: -29.73 SS G_CDS: 1.39 Total: -28.34 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -0.97 Total: -11.08 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.02 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.11 -8.17 -35.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244405153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.095 kcal (2) G-P(sol) polarization free energy of solvation -27.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds