Wall clock time and date at job start Tue Mar 31 2020 13:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99817 * 2 1 4 4 O 1.42893 * 109.47308 * 75.00010 * 3 2 1 5 5 C 1.35778 * 117.00149 * 74.99928 * 4 3 2 6 6 C 1.38572 * 120.13605 * 359.97438 * 5 4 3 7 7 C 1.38186 * 120.08046 * 180.29949 * 6 5 4 8 8 C 1.38509 * 120.36665 * 359.44189 * 7 6 5 9 9 C 1.50699 * 119.86734 * 180.27638 * 8 7 6 10 10 C 1.37875 * 120.27220 * 0.56222 * 8 7 6 11 11 C 1.39600 * 119.91189 * 359.71739 * 10 8 7 12 12 C 1.47888 * 120.17890 * 179.97438 * 11 10 8 13 13 C 1.40047 * 119.50001 * 130.02553 * 12 11 10 14 14 C 1.35970 * 121.18392 * 180.02562 * 13 12 11 15 15 C 1.41067 * 120.11344 * 359.94608 * 14 13 12 16 16 C 1.40414 * 120.48176 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99767 * 154.62299 * 16 15 14 18 18 C 1.40282 * 120.00209 * 334.63159 * 16 15 14 19 19 N 1.30645 * 119.99838 * 342.97931 * 18 16 15 20 20 Si 1.86799 * 120.00302 * 162.98698 * 18 16 15 21 21 H 1.48498 * 109.47297 * 59.99446 * 20 18 16 22 22 H 1.48496 * 109.47258 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47027 * 299.99576 * 20 18 16 24 24 C 1.46652 * 119.03414 * 0.02839 * 15 14 13 25 25 C 1.43202 * 120.56316 * 179.97438 * 24 15 14 26 26 N 8.74409 * 69.70597 * 63.95464 * 2 1 3 27 27 C 1.39052 * 118.87527 * 359.77110 * 24 15 14 28 28 H 1.08993 * 109.46812 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46950 * 300.00520 * 1 2 3 30 30 H 1.08997 * 109.46713 * 59.99936 * 1 2 3 31 31 H 1.08996 * 109.47088 * 314.99695 * 3 2 1 32 32 H 1.09010 * 109.46709 * 195.00003 * 3 2 1 33 33 H 1.07995 * 119.95789 * 0.02562 * 6 5 4 34 34 H 1.08005 * 119.81863 * 179.72551 * 7 6 5 35 35 H 1.09000 * 109.47600 * 270.28414 * 9 8 7 36 36 H 1.09002 * 109.46732 * 30.28369 * 9 8 7 37 37 H 1.08996 * 109.46977 * 150.27549 * 9 8 7 38 38 H 1.08000 * 120.04887 * 179.74523 * 10 8 7 39 39 H 1.07992 * 119.41022 * 359.97438 * 13 12 11 40 40 H 1.08005 * 119.94080 * 179.97438 * 14 13 12 41 41 H 0.97003 * 120.00470 * 180.02562 * 19 18 16 42 42 H 1.07994 * 120.10213 * 180.22506 * 27 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8854 1.8825 1.3013 5 6 2.7180 1.4136 2.2659 6 6 3.6362 0.4190 1.9693 7 6 4.4787 -0.0616 2.9535 8 6 4.4205 0.4533 4.2380 9 6 5.3490 -0.0748 5.3010 10 6 3.5127 1.4431 4.5495 11 6 2.6520 1.9331 3.5656 12 6 1.6755 2.9943 3.8934 13 6 1.5922 4.1303 3.0787 14 6 0.7074 5.1268 3.3486 15 6 -0.1498 5.0292 4.4647 16 6 -1.0668 6.0534 4.7503 17 1 -1.9654 5.8337 5.3076 18 6 -0.8159 7.3620 4.3115 19 7 0.3883 7.7070 3.9407 20 14 -2.2036 8.6114 4.2577 21 1 -2.7610 8.7912 5.6223 22 1 -1.6815 9.9100 3.7617 23 1 -3.2714 8.1262 3.3468 24 6 -0.0690 3.8424 5.3225 25 6 -0.9232 3.7097 6.4642 26 7 -1.6038 3.6010 7.3684 27 6 0.8480 2.8462 5.0059 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.4942 1.9329 -0.7267 32 1 3.0649 1.2336 -0.2660 33 1 3.6903 0.0160 0.9689 34 1 5.1897 -0.8400 2.7187 35 1 4.8790 -0.9176 5.8080 36 1 6.2807 -0.4021 4.8396 37 1 5.5589 0.7132 6.0242 38 1 3.4676 1.8391 5.5533 39 1 2.2430 4.2169 2.2213 40 1 0.6604 5.9944 2.7070 41 1 0.5620 8.6120 3.6376 42 1 0.9216 1.9622 5.6219 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244405153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:42 Heat of formation + Delta-G solvation = -39.426769 kcal Electronic energy + Delta-G solvation = -26196.923220 eV Core-core repulsion = 22492.002122 eV Total energy + Delta-G solvation = -3704.921098 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.25001 -39.59285 -38.89457 -37.35906 -36.96811 -35.95460 -33.34594 -32.38503 -31.65490 -30.56581 -28.68430 -27.49636 -27.16809 -25.72373 -24.11171 -23.76153 -22.21950 -21.63753 -19.54625 -19.24576 -18.47747 -17.79451 -17.53872 -17.13438 -16.40415 -16.16786 -15.91577 -15.61100 -15.45104 -14.89292 -14.73563 -14.70273 -14.52325 -14.40967 -14.19964 -14.04981 -13.75039 -13.53833 -13.47606 -13.16789 -12.96145 -12.88783 -12.72474 -12.62688 -12.36498 -12.21466 -12.15641 -11.86584 -11.79175 -11.50968 -11.40840 -11.15518 -11.03808 -9.92790 -9.46870 -9.24675 -8.89712 -8.64770 -6.50131 0.31680 0.49241 0.60533 1.08631 1.35895 1.46304 1.53397 2.01467 2.12550 2.36651 2.47226 2.63870 2.77896 3.01292 3.58828 3.64686 3.99560 4.06178 4.13940 4.16992 4.30441 4.35000 4.47165 4.50696 4.57235 4.59318 4.61825 4.78223 4.85961 4.92611 4.93667 4.95201 5.09104 5.20921 5.22579 5.28777 5.45037 5.49383 5.56593 5.74770 5.84652 5.90525 5.93375 6.08651 6.12538 6.15152 6.46521 6.62923 6.65314 6.80832 6.95833 8.05958 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011906 B = 0.003861 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.258360 B = 7249.642174 C = 8263.371328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.409 6.409 3 C 0.201 3.799 4 O -0.336 6.336 5 C 0.109 3.891 6 C -0.191 4.191 7 C -0.098 4.098 8 C -0.124 4.124 9 C -0.105 4.105 10 C -0.100 4.100 11 C -0.055 4.055 12 C -0.174 4.174 13 C -0.036 4.036 14 C -0.180 4.180 15 C 0.136 3.864 16 C -0.460 4.460 17 H 0.070 0.930 18 C 0.046 3.954 19 N -0.780 5.780 20 Si 0.978 3.022 21 H -0.268 1.268 22 H -0.253 1.253 23 H -0.255 1.255 24 C -0.211 4.211 25 C 0.306 3.694 26 N -0.530 5.530 27 C -0.011 4.011 28 H 0.099 0.901 29 H 0.029 0.971 30 H 0.062 0.938 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.123 0.877 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.302 0.698 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.792 -9.782 -10.627 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C 0.089 3.911 4 O -0.252 6.252 5 C 0.065 3.935 6 C -0.210 4.210 7 C -0.115 4.115 8 C -0.124 4.124 9 C -0.162 4.162 10 C -0.118 4.118 11 C -0.055 4.055 12 C -0.175 4.175 13 C -0.055 4.055 14 C -0.199 4.199 15 C 0.131 3.869 16 C -0.487 4.487 17 H 0.089 0.911 18 C -0.176 4.176 19 N -0.403 5.403 20 Si 0.798 3.202 21 H -0.193 1.193 22 H -0.177 1.177 23 H -0.179 1.179 24 C -0.217 4.217 25 C -0.002 4.002 26 N -0.210 5.210 27 C -0.031 4.031 28 H 0.117 0.883 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.141 0.859 39 H 0.125 0.875 40 H 0.135 0.865 41 H 0.114 0.886 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.869 -9.767 -9.305 15.617 hybrid contribution -0.656 0.923 -0.265 1.163 sum 7.213 -8.844 -9.570 14.894 Atomic orbital electron populations 1.22893 0.79625 1.03683 1.00639 1.87976 1.21811 1.29392 1.93708 1.24546 1.00820 0.83307 0.82451 1.86317 1.57610 1.60561 1.20669 1.19157 0.91156 0.94656 0.88533 1.21335 0.98498 0.99484 1.01645 1.21102 0.98986 0.99686 0.91775 1.20033 0.98610 0.97500 0.96262 1.20739 0.97869 1.01168 0.96378 1.21143 0.94944 0.97301 0.98433 1.18327 0.98085 0.97817 0.91296 1.17875 1.02903 0.96727 1.00033 1.20545 0.96000 0.92165 0.96773 1.20841 1.00546 0.99946 0.98601 1.18717 0.90254 0.89248 0.88729 1.19828 1.05555 0.93579 1.29712 0.91136 1.26789 0.98667 1.00865 0.91251 1.69711 1.21730 1.22041 1.26771 0.85288 0.78210 0.76800 0.79888 1.19266 1.17686 1.17936 1.16942 1.05696 1.02769 0.96290 1.25999 0.91565 0.90580 0.92105 1.81024 1.13532 1.12156 1.14306 1.20675 0.92212 0.95305 0.94942 0.88296 0.95214 0.91903 0.86117 0.86499 0.83836 0.83433 0.90834 0.90073 0.91662 0.85895 0.87523 0.86529 0.88600 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.89 113.37 1.23 1.81 16 2 O -0.41 -9.63 10.19 -126.21 -1.29 -10.92 16 3 C 0.20 4.40 6.39 113.37 0.72 5.13 16 4 O -0.34 -10.49 8.49 -68.30 -0.58 -11.07 16 5 C 0.11 3.51 6.51 22.81 0.15 3.66 16 6 C -0.19 -4.98 8.78 22.34 0.20 -4.79 16 7 C -0.10 -2.29 9.69 22.32 0.22 -2.07 16 8 C -0.12 -3.15 5.88 -19.89 -0.12 -3.27 16 9 C -0.10 -1.95 10.00 71.24 0.71 -1.23 16 10 C -0.10 -3.14 9.12 22.51 0.21 -2.94 16 11 C -0.05 -1.95 5.46 -19.94 -0.11 -2.06 16 12 C -0.17 -7.20 5.29 -19.99 -0.11 -7.31 16 13 C -0.04 -1.54 8.62 22.18 0.19 -1.34 16 14 C -0.18 -8.56 8.62 22.44 0.19 -8.37 16 15 C 0.14 6.88 5.73 -19.86 -0.11 6.77 16 16 C -0.46 -23.43 8.55 23.30 0.20 -23.23 16 17 H 0.07 3.68 7.38 -2.91 -0.02 3.66 16 18 C 0.05 2.11 5.15 85.37 0.44 2.55 16 19 N -0.78 -36.10 10.96 21.88 0.24 -35.86 16 20 Si 0.98 35.28 29.59 68.60 2.03 37.31 16 21 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 22 H -0.25 -8.27 7.11 99.48 0.71 -7.56 16 23 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 24 C -0.21 -10.20 5.93 -19.64 -0.12 -10.32 16 25 C 0.31 15.13 14.30 88.32 1.26 16.40 16 26 N -0.53 -26.65 18.54 19.02 0.35 -26.30 16 27 C -0.01 -0.46 9.18 22.76 0.21 -0.25 16 28 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.03 0.76 8.03 -2.39 -0.02 0.74 16 30 H 0.06 1.04 8.11 -2.39 -0.02 1.02 16 31 H 0.12 2.08 8.01 -2.39 -0.02 2.07 16 32 H 0.12 2.02 6.70 -2.38 -0.02 2.00 16 33 H 0.14 3.13 5.85 -2.91 -0.02 3.11 16 34 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.17 8.09 -2.39 -0.02 1.16 16 37 H 0.06 1.20 8.08 -2.39 -0.02 1.18 16 38 H 0.12 3.79 8.03 -2.91 -0.02 3.77 16 39 H 0.11 4.23 7.60 -2.91 -0.02 4.21 16 40 H 0.12 5.62 6.20 -2.91 -0.02 5.60 16 41 H 0.30 12.35 8.29 -92.71 -0.77 11.58 16 42 H 0.11 4.44 8.02 -2.91 -0.02 4.41 16 Total: -1.00 -60.10 365.95 7.18 -52.92 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 1.05 Total: 24.78 kcal Atomic # 6 Polarization: -36.24 SS G_CDS: 5.37 Total: -30.87 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: 0.59 Total: -62.16 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -1.87 Total: -21.99 kcal Atomic # 14 Polarization: 35.28 SS G_CDS: 2.03 Total: 37.31 kcal Total: -60.10 7.18 -52.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244405153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.491 kcal (2) G-P(sol) polarization free energy of solvation -60.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds