Wall clock time and date at job start Tue Mar 31 2020 13:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00140 * 2 1 4 4 O 1.42898 * 109.46920 * 74.99709 * 3 2 1 5 5 C 1.35910 * 116.99927 * 75.00482 * 4 3 2 6 6 C 1.38832 * 119.99339 * 359.71819 * 5 4 3 7 7 C 1.38220 * 120.19335 * 179.72632 * 6 5 4 8 8 C 1.38054 * 120.18341 * 0.55359 * 7 6 5 9 9 C 1.50710 * 120.00565 * 179.74776 * 8 7 6 10 10 C 1.39374 * 119.98690 * 359.72546 * 8 7 6 11 11 C 1.48326 * 120.09932 * 179.97438 * 10 8 7 12 12 C 1.39810 * 119.53535 * 310.02109 * 11 10 8 13 13 C 1.37716 * 121.17273 * 180.02562 * 12 11 10 14 14 C 1.39580 * 120.18514 * 359.97438 * 13 12 11 15 15 C 1.43201 * 120.45729 * 180.02562 * 14 13 12 16 16 N 9.93005 * 129.46706 * 242.73299 * 4 1 2 17 17 C 1.46536 * 119.08601 * 359.97438 * 14 13 12 18 18 C 1.40838 * 120.55252 * 180.02562 * 17 14 13 19 19 H 1.08009 * 120.00098 * 330.05035 * 18 17 14 20 20 C 1.40230 * 120.00328 * 150.04972 * 18 17 14 21 21 N 1.30664 * 120.00423 * 161.85315 * 20 18 17 22 22 Si 1.86800 * 120.00049 * 341.85250 * 20 18 17 23 23 H 1.48500 * 109.47344 * 95.39544 * 22 20 18 24 24 H 1.48496 * 109.47603 * 215.40253 * 22 20 18 25 25 H 1.48503 * 109.46813 * 335.40137 * 22 20 18 26 26 C 1.38597 * 119.53677 * 129.74885 * 11 10 8 27 27 C 1.38488 * 119.99169 * 179.97438 * 5 4 3 28 28 H 1.08999 * 109.46546 * 59.99933 * 1 2 3 29 29 H 1.08996 * 109.47234 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46996 * 300.00232 * 1 2 3 31 31 H 1.08998 * 109.47125 * 314.99962 * 3 2 1 32 32 H 1.09001 * 109.46755 * 194.99584 * 3 2 1 33 33 H 1.08003 * 119.90731 * 0.02562 * 6 5 4 34 34 H 1.08006 * 119.90571 * 180.25990 * 7 6 5 35 35 H 1.08996 * 109.46878 * 269.97598 * 9 8 7 36 36 H 1.08996 * 109.46781 * 29.97848 * 9 8 7 37 37 H 1.09005 * 109.46798 * 149.97671 * 9 8 7 38 38 H 1.08002 * 119.41454 * 359.97438 * 12 11 10 39 39 H 1.08005 * 119.90835 * 179.97438 * 13 12 11 40 40 H 0.97000 * 120.00006 * 180.02562 * 21 20 18 41 41 H 1.08001 * 120.13070 * 359.97438 * 26 11 10 42 42 H 1.08005 * 120.09653 * 359.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 8 1.8854 1.8825 1.3014 5 6 2.7188 1.4131 2.2669 6 6 3.6340 0.4129 1.9677 7 6 4.4874 -0.0635 2.9451 8 6 4.4267 0.4446 4.2273 9 6 5.3552 -0.0818 5.2913 10 6 3.5069 1.4448 4.5375 11 6 3.4392 1.9921 5.9144 12 6 3.3549 1.1162 7.0009 13 6 3.2898 1.5876 8.2932 14 6 3.3078 2.9611 8.5410 15 6 3.2410 3.4576 9.8825 16 7 3.1883 3.8518 10.9466 17 6 3.3971 3.8879 7.4095 18 6 3.4180 5.2797 7.6240 19 1 2.9097 5.7022 8.4783 20 6 4.0987 6.1171 6.7286 21 7 3.8391 7.3975 6.7053 22 14 5.3767 5.4022 5.5688 23 1 4.7472 5.1144 4.2550 24 1 6.4804 6.3786 5.3857 25 1 5.9186 4.1448 6.1439 26 6 3.4662 3.3644 6.1063 27 6 2.6513 1.9290 3.5504 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.4943 1.9330 -0.7267 32 1 3.0649 1.2336 -0.2659 33 1 3.6826 0.0092 0.9672 34 1 5.2004 -0.8387 2.7062 35 1 4.8856 -0.9242 5.7990 36 1 6.2873 -0.4088 4.8306 37 1 5.5642 0.7072 6.0138 38 1 3.3397 0.0509 6.8235 39 1 3.2247 0.8925 9.1173 40 1 4.3097 7.9766 6.0856 41 1 3.5364 4.0292 5.2580 42 1 1.9373 2.7045 3.7855 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244456963.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:36 Heat of formation + Delta-G solvation = -24.756189 kcal Electronic energy + Delta-G solvation = -26167.354334 eV Core-core repulsion = 22463.069400 eV Total energy + Delta-G solvation = -3704.284934 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.31811 -38.85336 -37.58533 -36.55087 -35.17226 -34.04675 -32.05329 -31.81044 -30.65783 -28.97819 -27.85305 -26.56950 -25.59786 -24.96609 -23.43692 -21.55614 -21.34044 -20.36697 -18.34019 -17.69594 -17.35797 -17.07174 -16.83391 -15.67975 -15.24434 -15.19526 -14.74662 -14.41966 -14.14854 -13.88964 -13.75885 -13.64352 -13.36395 -13.11555 -12.99614 -12.69994 -12.49096 -12.26098 -11.97708 -11.83317 -11.69813 -11.58705 -11.49940 -11.40804 -11.07277 -10.96042 -10.88279 -10.74275 -10.46819 -10.32976 -10.04826 -9.92950 -9.38659 -8.78483 -8.02130 -7.91427 -7.48792 -7.29342 -4.82489 1.26146 1.62451 2.05401 2.47467 2.96676 3.03868 3.14746 3.18020 3.44700 3.73883 3.83254 3.83940 4.10736 4.40093 4.69977 4.83181 4.97673 5.05271 5.06930 5.16946 5.19527 5.26055 5.29979 5.42577 5.45638 5.52222 5.66552 5.79683 5.92530 5.95871 6.16469 6.19353 6.30627 6.39830 6.44590 6.48841 6.58278 6.61714 6.78386 6.88525 6.92652 7.03518 7.29076 7.38746 7.49476 7.55844 7.72869 7.98459 8.26367 8.39816 8.72833 9.69646 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013155 B = 0.003916 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.999897 B = 7149.244746 C = 7952.117815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.396 6.396 3 C 0.212 3.788 4 O -0.332 6.332 5 C 0.117 3.883 6 C -0.199 4.199 7 C -0.088 4.088 8 C -0.106 4.106 9 C -0.111 4.111 10 C 0.001 3.999 11 C 0.011 3.989 12 C -0.234 4.234 13 C -0.018 4.018 14 C -0.168 4.168 15 C 0.296 3.704 16 N -0.498 5.498 17 C 0.127 3.873 18 C -0.415 4.415 19 H 0.098 0.902 20 C 0.084 3.916 21 N -0.775 5.775 22 Si 0.907 3.093 23 H -0.261 1.261 24 H -0.284 1.284 25 H -0.236 1.236 26 C -0.213 4.213 27 C -0.134 4.134 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.294 0.706 41 H 0.111 0.889 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.245 -12.438 -16.009 20.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.316 6.316 3 C 0.099 3.901 4 O -0.248 6.248 5 C 0.073 3.927 6 C -0.217 4.217 7 C -0.106 4.106 8 C -0.106 4.106 9 C -0.167 4.167 10 C 0.001 3.999 11 C 0.010 3.990 12 C -0.253 4.253 13 C -0.038 4.038 14 C -0.173 4.173 15 C -0.014 4.014 16 N -0.177 5.177 17 C 0.121 3.879 18 C -0.442 4.442 19 H 0.116 0.884 20 C -0.140 4.140 21 N -0.396 5.396 22 Si 0.731 3.269 23 H -0.187 1.187 24 H -0.211 1.211 25 H -0.158 1.158 26 C -0.232 4.232 27 C -0.152 4.152 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.105 0.895 41 H 0.129 0.871 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.356 -11.531 -14.395 18.447 hybrid contribution 0.316 -0.029 -1.271 1.310 sum -0.040 -11.560 -15.667 19.470 Atomic orbital electron populations 1.22816 0.80245 1.02975 1.00636 1.88040 1.21058 1.28754 1.93715 1.24143 0.99643 0.83218 0.83111 1.86228 1.57922 1.60613 1.20011 1.18764 0.90759 0.94524 0.88633 1.21173 0.99416 1.00478 1.00667 1.20688 0.98473 0.99217 0.92198 1.19902 0.98302 0.97330 0.95100 1.20852 0.96912 1.01678 0.97294 1.18767 0.93985 0.94180 0.92938 1.18329 0.97433 0.93064 0.90131 1.20152 1.16371 0.97670 0.91135 1.20498 0.94645 0.92709 0.95983 1.16900 1.23245 0.92484 0.84697 1.25697 0.91511 0.91822 0.92387 1.81036 1.14289 1.09287 1.13061 1.18359 0.88058 0.92227 0.89278 1.19661 1.26037 0.89639 1.08834 0.88424 1.26359 0.97125 0.94532 0.95955 1.69597 1.33676 1.05740 1.30614 0.86350 0.79606 0.80667 0.80277 1.18658 1.21120 1.15817 1.21033 1.12817 0.93262 0.96115 1.20576 1.02222 1.02709 0.89730 0.93828 0.89538 0.93007 0.88029 0.88176 0.85565 0.86034 0.91349 0.92521 0.90268 0.87547 0.87598 0.89543 0.87118 0.84914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.89 101.05 1.10 1.35 16 2 O -0.40 -4.22 10.17 -59.04 -0.60 -4.82 16 3 C 0.21 2.07 6.39 101.05 0.65 2.71 16 4 O -0.33 -4.53 10.19 -43.27 -0.44 -4.97 16 5 C 0.12 1.77 6.62 -39.27 -0.26 1.51 16 6 C -0.20 -2.67 8.77 -39.37 -0.35 -3.02 16 7 C -0.09 -1.17 9.68 -39.66 -0.38 -1.55 16 8 C -0.11 -1.61 5.86 -104.26 -0.61 -2.22 16 9 C -0.11 -1.47 8.43 36.01 0.30 -1.17 16 10 C 0.00 0.03 5.44 -104.92 -0.57 -0.55 16 11 C 0.01 0.22 4.72 -105.03 -0.50 -0.28 16 12 C -0.23 -4.18 7.81 -39.18 -0.31 -4.48 16 13 C -0.02 -0.33 9.74 -39.27 -0.38 -0.71 16 14 C -0.17 -3.66 5.95 -104.13 -0.62 -4.28 16 15 C 0.30 6.81 14.35 -22.47 -0.32 6.48 16 16 N -0.50 -11.93 18.54 41.84 0.78 -11.16 16 17 C 0.13 2.94 5.27 -104.68 -0.55 2.39 16 18 C -0.42 -10.50 9.02 -37.85 -0.34 -10.84 16 19 H 0.10 2.69 7.65 -52.48 -0.40 2.29 16 20 C 0.08 2.05 5.41 -17.30 -0.09 1.95 16 21 N -0.78 -19.19 13.92 55.56 0.77 -18.42 16 22 Si 0.91 19.10 24.53 -169.99 -4.17 14.93 16 23 H -0.26 -5.34 6.72 56.52 0.38 -4.96 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 25 H -0.24 -5.01 6.86 56.52 0.39 -4.62 16 26 C -0.21 -4.59 6.59 -38.55 -0.25 -4.84 16 27 C -0.13 -2.28 9.41 -39.09 -0.37 -2.64 16 28 H 0.04 0.28 8.11 -51.93 -0.42 -0.14 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.49 8.03 -51.93 -0.42 0.07 16 31 H 0.10 0.71 8.01 -51.93 -0.42 0.30 16 32 H 0.10 0.83 6.71 -51.93 -0.35 0.48 16 33 H 0.13 1.44 5.84 -52.48 -0.31 1.14 16 34 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 35 H 0.07 0.82 7.45 -51.93 -0.39 0.43 16 36 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 37 H 0.08 1.19 6.45 -51.93 -0.33 0.86 16 38 H 0.11 1.66 6.75 -52.49 -0.35 1.31 16 39 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 40 H 0.29 6.50 8.29 -40.82 -0.34 6.16 16 41 H 0.11 2.40 4.69 -52.49 -0.25 2.16 16 42 H 0.13 2.29 8.03 -52.48 -0.42 1.87 16 LS Contribution 356.74 15.07 5.38 5.38 Total: -1.00 -27.71 356.74 -7.06 -34.76 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -4.91 Total: 4.49 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -3.86 Total: -20.18 kcal Atomic # 7 Polarization: -31.13 SS G_CDS: 1.55 Total: -29.58 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -1.04 Total: -9.80 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.17 Total: 14.93 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.71 -7.06 -34.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244456963.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.006 kcal (2) G-P(sol) polarization free energy of solvation -27.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds