Wall clock time and date at job start Tue Mar 31 2020 13:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00297 * 2 1 4 4 O 1.42903 * 109.47104 * 74.99627 * 3 2 1 5 5 C 1.35908 * 116.99804 * 75.00473 * 4 3 2 6 6 C 1.38900 * 119.98552 * 359.71796 * 5 4 3 7 7 C 1.38274 * 120.23167 * 179.76620 * 6 5 4 8 8 C 1.37988 * 120.19724 * 0.51649 * 7 6 5 9 9 C 1.50705 * 120.01566 * 179.76372 * 8 7 6 10 10 C 1.39595 * 119.97096 * 359.74568 * 8 7 6 11 11 C 1.48026 * 120.11637 * 179.97438 * 10 8 7 12 12 C 1.39968 * 119.50131 * 310.01854 * 11 10 8 13 13 C 1.36009 * 121.19691 * 179.97438 * 12 11 10 14 14 C 1.41037 * 120.10895 * 359.97438 * 13 12 11 15 15 C 1.40449 * 120.49312 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99990 * 204.71239 * 15 14 13 17 17 C 1.40304 * 119.99930 * 24.70253 * 15 14 13 18 18 N 1.30632 * 120.00343 * 17.51972 * 17 15 14 19 19 Si 1.86802 * 120.00016 * 197.51714 * 17 15 14 20 20 H 1.48500 * 109.47031 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47091 * 120.00086 * 19 17 15 22 22 H 1.48498 * 109.47376 * 240.00266 * 19 17 15 23 23 C 1.46646 * 119.01887 * 0.02562 * 14 13 12 24 24 C 1.43198 * 120.56448 * 179.97438 * 23 14 13 25 25 N 9.42448 * 115.03495 * 245.67309 * 3 1 2 26 26 C 1.39088 * 118.86464 * 359.73544 * 23 14 13 27 27 C 1.38426 * 119.98327 * 180.02562 * 5 4 3 28 28 H 1.09004 * 109.46754 * 60.00038 * 1 2 3 29 29 H 1.09001 * 109.46919 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47470 * 300.00286 * 1 2 3 31 31 H 1.08999 * 109.47190 * 314.99905 * 3 2 1 32 32 H 1.08995 * 109.47593 * 194.99925 * 3 2 1 33 33 H 1.08004 * 119.88089 * 0.03219 * 6 5 4 34 34 H 1.07996 * 119.89782 * 180.24166 * 7 6 5 35 35 H 1.08992 * 109.47074 * 269.98135 * 9 8 7 36 36 H 1.09001 * 109.46944 * 29.98446 * 9 8 7 37 37 H 1.09001 * 109.47195 * 149.97685 * 9 8 7 38 38 H 1.08000 * 119.40042 * 359.97438 * 12 11 10 39 39 H 1.08000 * 119.94599 * 180.02562 * 13 12 11 40 40 H 0.96993 * 120.00084 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.09631 * 180.28499 * 26 23 14 42 42 H 1.08000 * 120.09897 * 359.94937 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 1.8854 1.8825 1.3014 5 6 2.7188 1.4131 2.2669 6 6 3.6343 0.4124 1.9674 7 6 4.4879 -0.0655 2.9447 8 6 4.4283 0.4415 4.2267 9 6 5.3570 -0.0861 5.2899 10 6 3.5077 1.4435 4.5382 11 6 3.4407 1.9893 5.9126 12 6 3.3560 1.1114 6.9994 13 6 3.2932 1.5752 8.2764 14 6 3.3132 2.9630 8.5269 15 6 3.2493 3.4508 9.8424 16 1 2.8712 4.4445 10.0321 17 6 3.6764 2.6470 10.9102 18 7 4.4364 1.6091 10.6832 19 14 3.1582 3.0611 12.6565 20 1 2.3040 4.2758 12.6445 21 1 2.3931 1.9242 13.2285 22 1 4.3650 3.3122 13.4846 23 6 3.4017 3.8892 7.3934 24 6 3.4238 5.3046 7.6096 25 7 3.4393 6.4276 7.7809 26 6 3.4689 3.3693 6.1051 27 6 2.6504 1.9282 3.5500 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.4943 1.9329 -0.7267 32 1 3.0648 1.2337 -0.2659 33 1 3.6825 0.0092 0.9667 34 1 5.2003 -0.8409 2.7049 35 1 4.8871 -0.9287 5.7971 36 1 6.2887 -0.4134 4.8286 37 1 5.5668 0.7022 6.0128 38 1 3.3403 0.0464 6.8208 39 1 3.2287 0.8796 9.1001 40 1 4.7320 1.0537 11.4214 41 1 3.5392 4.0332 5.2562 42 1 1.9362 2.7034 3.7851 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244457240.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:46 Heat of formation + Delta-G solvation = -28.757171 kcal Electronic energy + Delta-G solvation = -25707.587250 eV Core-core repulsion = 22003.128821 eV Total energy + Delta-G solvation = -3704.458430 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.15558 -38.64894 -37.44954 -36.44429 -35.10696 -34.22895 -31.76990 -31.46989 -29.85583 -29.15389 -27.92242 -26.58899 -25.39300 -24.87657 -22.67106 -22.08391 -20.97549 -20.30843 -18.33670 -17.72514 -17.02477 -16.73745 -16.59731 -15.63367 -15.26601 -15.01434 -14.62769 -14.38950 -14.14285 -13.71613 -13.64423 -13.39951 -13.13923 -12.95866 -12.89591 -12.66983 -12.16447 -12.04946 -11.85634 -11.70954 -11.63572 -11.57731 -11.36747 -11.33628 -11.11208 -10.90817 -10.79030 -10.56194 -10.51498 -10.26970 -9.87108 -9.83656 -9.59477 -8.54156 -7.85737 -7.74211 -7.42547 -7.21560 -4.76999 1.60937 1.80579 2.18999 2.61660 2.87748 2.93986 2.98867 3.29127 3.52165 3.63202 3.89407 4.02910 4.27594 4.40824 4.76103 4.91890 5.09582 5.13976 5.21665 5.26713 5.36630 5.42725 5.48999 5.49812 5.66604 5.75533 5.91350 5.97734 6.10984 6.11882 6.30307 6.38191 6.52947 6.60384 6.62638 6.71016 6.74121 6.82831 6.93461 7.08292 7.12740 7.21641 7.51285 7.62298 7.65330 7.77555 7.83061 8.17073 8.34924 8.50687 8.80615 9.64217 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018445 B = 0.002902 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.675499 B = 9646.922039 C =10249.209618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.396 6.396 3 C 0.213 3.787 4 O -0.334 6.334 5 C 0.118 3.882 6 C -0.213 4.213 7 C -0.084 4.084 8 C -0.120 4.120 9 C -0.108 4.108 10 C 0.043 3.957 11 C -0.203 4.203 12 C -0.050 4.050 13 C -0.168 4.168 14 C 0.156 3.844 15 C -0.420 4.420 16 H 0.088 0.912 17 C 0.075 3.925 18 N -0.754 5.754 19 Si 0.915 3.085 20 H -0.255 1.255 21 H -0.265 1.265 22 H -0.268 1.268 23 C -0.191 4.191 24 C 0.300 3.700 25 N -0.509 5.509 26 C 0.000 4.000 27 C -0.152 4.152 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.292 0.708 41 H 0.100 0.900 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.501 -7.937 -13.249 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.316 6.316 3 C 0.100 3.900 4 O -0.251 6.251 5 C 0.075 3.925 6 C -0.232 4.232 7 C -0.103 4.103 8 C -0.120 4.120 9 C -0.164 4.164 10 C 0.043 3.957 11 C -0.205 4.205 12 C -0.069 4.069 13 C -0.187 4.187 14 C 0.150 3.850 15 C -0.446 4.446 16 H 0.106 0.894 17 C -0.149 4.149 18 N -0.375 5.375 19 Si 0.738 3.262 20 H -0.178 1.178 21 H -0.190 1.190 22 H -0.193 1.193 23 C -0.197 4.197 24 C -0.009 4.009 25 N -0.189 5.189 26 C -0.021 4.021 27 C -0.170 4.170 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.115 0.885 39 H 0.144 0.856 40 H 0.103 0.897 41 H 0.118 0.882 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.367 -6.412 -12.847 14.552 hybrid contribution -0.224 -0.327 0.435 0.589 sum -2.592 -6.739 -12.412 14.359 Atomic orbital electron populations 1.22804 0.80360 1.02929 1.00534 1.88044 1.20949 1.28832 1.93730 1.24102 0.99543 0.83130 0.83252 1.86204 1.58175 1.60683 1.19989 1.18792 0.90624 0.94578 0.88556 1.21076 1.00325 1.01312 1.00490 1.20653 0.98268 0.98937 0.92400 1.19968 0.98605 0.98694 0.94775 1.20790 0.96752 1.01503 0.97362 1.18574 0.91842 0.92798 0.92491 1.17665 1.20368 0.92234 0.90191 1.20471 0.96830 0.97370 0.92249 1.20906 1.07225 0.95068 0.95539 1.18488 0.84994 0.90849 0.90656 1.19862 1.32614 1.01405 0.90747 0.89416 1.26167 0.92328 0.93572 1.02847 1.69711 1.20157 1.11822 1.35807 0.86104 0.79901 0.80405 0.79798 1.17815 1.18963 1.19315 1.16743 1.25145 0.83682 0.94104 1.25767 0.91138 0.92592 0.91420 1.81027 1.15140 1.12900 1.09788 1.20522 0.94012 0.93523 0.94014 1.20581 1.02635 1.03905 0.89928 0.93926 0.89584 0.93047 0.88265 0.88258 0.86022 0.86525 0.91830 0.92893 0.90215 0.88502 0.85618 0.89677 0.88187 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.89 101.05 1.10 1.36 16 2 O -0.40 -4.45 10.16 -59.04 -0.60 -5.05 16 3 C 0.21 2.16 6.39 101.05 0.65 2.80 16 4 O -0.33 -4.64 10.19 -43.26 -0.44 -5.08 16 5 C 0.12 1.83 6.62 -39.27 -0.26 1.57 16 6 C -0.21 -3.05 8.78 -39.32 -0.35 -3.39 16 7 C -0.08 -1.22 9.68 -39.66 -0.38 -1.60 16 8 C -0.12 -1.94 5.86 -104.21 -0.61 -2.55 16 9 C -0.11 -1.61 8.43 36.01 0.30 -1.30 16 10 C 0.04 0.77 5.44 -104.90 -0.57 0.20 16 11 C -0.20 -3.98 4.74 -104.82 -0.50 -4.48 16 12 C -0.05 -1.00 7.74 -39.73 -0.31 -1.31 16 13 C -0.17 -3.71 8.63 -39.32 -0.34 -4.05 16 14 C 0.16 3.67 5.74 -104.61 -0.60 3.07 16 15 C -0.42 -9.98 8.56 -37.97 -0.33 -10.31 16 16 H 0.09 2.13 7.37 -52.49 -0.39 1.74 16 17 C 0.08 1.65 5.15 -17.29 -0.09 1.56 16 18 N -0.75 -16.58 10.95 55.57 0.61 -15.97 16 19 Si 0.92 16.69 29.60 -169.99 -5.03 11.66 16 20 H -0.25 -4.78 7.11 56.52 0.40 -4.38 16 21 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 22 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 23 C -0.19 -4.33 5.93 -104.26 -0.62 -4.95 16 24 C 0.30 7.04 14.29 -22.47 -0.32 6.72 16 25 N -0.51 -12.29 18.54 41.84 0.78 -11.52 16 26 C 0.00 0.00 9.18 -38.85 -0.36 -0.35 16 27 C -0.15 -2.59 9.42 -39.04 -0.37 -2.96 16 28 H 0.04 0.29 8.11 -51.93 -0.42 -0.14 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.50 8.03 -51.93 -0.42 0.09 16 31 H 0.10 0.72 8.01 -51.93 -0.42 0.30 16 32 H 0.10 0.87 6.71 -51.93 -0.35 0.53 16 33 H 0.12 1.51 5.83 -52.48 -0.31 1.20 16 34 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 35 H 0.06 0.90 7.45 -51.93 -0.39 0.51 16 36 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 37 H 0.08 1.35 6.45 -51.93 -0.34 1.01 16 38 H 0.10 1.76 6.75 -52.49 -0.35 1.40 16 39 H 0.13 2.81 6.17 -52.49 -0.32 2.49 16 40 H 0.29 5.71 8.29 -40.82 -0.34 5.38 16 41 H 0.10 1.91 8.02 -52.49 -0.42 1.49 16 42 H 0.13 2.13 8.03 -52.49 -0.42 1.71 16 LS Contribution 361.76 15.07 5.45 5.45 Total: -1.00 -26.27 361.76 -8.12 -34.39 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -4.94 Total: 6.09 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -3.94 Total: -19.96 kcal Atomic # 7 Polarization: -28.88 SS G_CDS: 1.38 Total: -27.49 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -1.04 Total: -10.13 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -5.03 Total: 11.66 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -26.27 -8.12 -34.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244457240.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.634 kcal (2) G-P(sol) polarization free energy of solvation -26.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds