Wall clock time and date at job start Tue Mar 31 2020 14:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00244 * 2 1 4 4 O 1.42896 * 109.47133 * 77.57533 * 3 2 1 5 5 C 1.35783 * 117.00352 * 76.18909 * 4 3 2 6 6 C 1.38576 * 120.13358 * 82.54727 * 5 4 3 7 7 C 1.50701 * 119.96039 * 359.97438 * 6 5 4 8 8 C 1.38189 * 120.08019 * 179.79311 * 6 5 4 9 9 C 1.38503 * 120.36145 * 0.46208 * 8 6 5 10 10 C 1.37879 * 120.28039 * 359.79308 * 9 8 6 11 11 C 1.39601 * 119.90565 * 359.97438 * 10 9 8 12 12 C 1.47886 * 120.17690 * 180.02562 * 11 10 9 13 13 C 1.40038 * 119.50533 * 123.19350 * 12 11 10 14 14 C 1.35965 * 121.18989 * 179.74841 * 13 12 11 15 15 C 1.41070 * 120.11505 * 0.52551 * 14 13 12 16 16 C 1.40406 * 120.48705 * 179.75843 * 15 14 13 17 17 H 1.08007 * 120.00067 * 150.22664 * 16 15 14 18 18 C 1.40284 * 119.99980 * 330.22854 * 16 15 14 19 19 N 1.30646 * 119.99551 * 166.52448 * 18 16 15 20 20 Si 1.86797 * 120.00119 * 346.52726 * 18 16 15 21 21 H 1.48498 * 109.47080 * 90.27771 * 20 18 16 22 22 H 1.48503 * 109.46777 * 210.27767 * 20 18 16 23 23 H 1.48493 * 109.47192 * 330.27849 * 20 18 16 24 24 C 1.46657 * 119.02685 * 359.73876 * 15 14 13 25 25 C 1.43200 * 120.56014 * 180.02562 * 24 15 14 26 26 N 5.69101 * 67.56991 * 151.01899 * 2 1 3 27 27 C 1.39058 * 118.87679 * 359.97438 * 24 15 14 28 28 H 1.08996 * 109.47087 * 66.94988 * 1 2 3 29 29 H 1.08999 * 109.47004 * 186.95016 * 1 2 3 30 30 H 1.09001 * 109.46707 * 306.95439 * 1 2 3 31 31 H 1.09010 * 109.47080 * 197.57446 * 3 2 1 32 32 H 1.08994 * 109.47355 * 317.56784 * 3 2 1 33 33 H 1.09002 * 109.46710 * 90.00086 * 7 6 5 34 34 H 1.08995 * 109.47004 * 210.00291 * 7 6 5 35 35 H 1.08998 * 109.46953 * 330.00231 * 7 6 5 36 36 H 1.07993 * 119.81558 * 180.23512 * 8 6 5 37 37 H 1.08004 * 119.86495 * 179.76689 * 9 8 6 38 38 H 1.07994 * 120.04610 * 179.97438 * 10 9 8 39 39 H 1.08004 * 119.40784 * 0.02562 * 13 12 11 40 40 H 1.08002 * 119.94909 * 180.26727 * 14 13 12 41 41 H 0.97008 * 119.99941 * 180.02562 * 19 18 16 42 42 H 1.07995 * 120.09824 * 179.97438 * 27 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 1.9392 1.8584 1.3157 5 6 2.8270 1.3900 2.2301 6 6 4.1135 1.9027 2.2767 7 6 4.5290 2.9820 1.3104 8 6 5.0148 1.4282 3.2106 9 6 4.6436 0.4325 4.0988 10 6 3.3690 -0.0920 4.0622 11 6 2.4478 0.3823 3.1267 12 6 1.0789 -0.1756 3.0825 13 6 -0.0199 0.6814 3.2209 14 6 -1.2931 0.2060 3.1805 15 6 -1.5282 -1.1742 3.0075 16 6 -2.8396 -1.6741 2.9696 17 1 -3.0639 -2.5587 2.3919 18 6 -3.8587 -1.0248 3.6822 19 7 -5.1097 -1.3185 3.4466 20 14 -3.4270 0.2599 4.9677 21 1 -3.3689 1.5992 4.3291 22 1 -4.4631 0.2632 6.0316 23 1 -2.1058 -0.0616 5.5645 24 6 -0.3826 -2.0790 2.8673 25 6 -0.5833 -3.4857 2.6897 26 7 -0.7424 -4.6017 2.5488 27 6 0.9018 -1.5478 2.9088 28 1 -0.3633 0.4024 -0.9456 29 1 -0.3633 -1.0201 0.1244 30 1 -0.3633 0.6178 0.8212 31 1 3.0531 1.2388 -0.3103 32 1 1.4652 1.9458 -0.6933 33 1 4.3193 3.9593 1.7452 34 1 5.5964 2.8963 1.1071 35 1 3.9719 2.8709 0.3802 36 1 6.0152 1.8335 3.2456 37 1 5.3557 0.0649 4.8229 38 1 3.0837 -0.8686 4.7563 39 1 0.1468 1.7397 3.3579 40 1 -2.1260 0.8856 3.2851 41 1 -5.8145 -0.8693 3.9391 42 1 1.7596 -2.1961 2.8080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244659568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:45 Heat of formation + Delta-G solvation = -19.730486 kcal Electronic energy + Delta-G solvation = -27383.543769 eV Core-core repulsion = 23679.476766 eV Total energy + Delta-G solvation = -3704.067003 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.08628 -37.96716 -37.73699 -35.85757 -35.23490 -34.25947 -32.75466 -31.12492 -30.30493 -29.14917 -27.44595 -26.53047 -25.53965 -24.50246 -22.59334 -22.10466 -21.26666 -20.51404 -17.88459 -17.71160 -17.36860 -16.54882 -16.27577 -15.55645 -15.36892 -14.98473 -14.64987 -14.36906 -14.04467 -13.80478 -13.74672 -13.31875 -13.25912 -12.92274 -12.73613 -12.57576 -12.37397 -12.07599 -11.97085 -11.88956 -11.77685 -11.55571 -11.43309 -11.11782 -11.05234 -10.89315 -10.68653 -10.36700 -10.29719 -9.94834 -9.89744 -9.66781 -9.40999 -8.50970 -8.29123 -7.90977 -7.54721 -7.34680 -4.85624 1.42943 1.50794 1.99264 2.46303 2.91205 3.02061 3.11672 3.64173 3.69599 3.83313 3.95318 4.11867 4.28502 4.38679 4.94992 4.96354 5.15563 5.23977 5.25104 5.28923 5.35543 5.38274 5.59087 5.70804 5.71947 5.77612 5.78218 5.83488 5.95311 6.06751 6.10596 6.29158 6.38107 6.45145 6.51215 6.61475 6.65885 6.80481 6.82742 6.94457 7.07504 7.25684 7.34803 7.40800 7.60281 7.71918 7.85384 7.93446 8.24508 8.34778 8.72592 9.63565 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014403 B = 0.004569 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.597182 B = 6127.046671 C = 6245.650483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.387 6.387 3 C 0.219 3.781 4 O -0.338 6.338 5 C 0.095 3.905 6 C -0.111 4.111 7 C -0.107 4.107 8 C -0.130 4.130 9 C -0.121 4.121 10 C -0.117 4.117 11 C 0.002 3.998 12 C -0.190 4.190 13 C -0.012 4.012 14 C -0.248 4.248 15 C 0.132 3.868 16 C -0.405 4.405 17 H 0.097 0.903 18 C 0.080 3.920 19 N -0.774 5.774 20 Si 0.921 3.079 21 H -0.263 1.263 22 H -0.288 1.288 23 H -0.237 1.237 24 C -0.172 4.172 25 C 0.296 3.704 26 N -0.498 5.498 27 C 0.017 3.983 28 H 0.028 0.972 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.295 0.705 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.212 10.655 -1.859 17.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C 0.106 3.894 4 O -0.256 6.256 5 C 0.051 3.949 6 C -0.112 4.112 7 C -0.164 4.164 8 C -0.148 4.148 9 C -0.139 4.139 10 C -0.135 4.135 11 C 0.001 3.999 12 C -0.192 4.192 13 C -0.031 4.031 14 C -0.267 4.267 15 C 0.126 3.874 16 C -0.432 4.432 17 H 0.115 0.885 18 C -0.144 4.144 19 N -0.395 5.395 20 Si 0.746 3.254 21 H -0.189 1.189 22 H -0.216 1.216 23 H -0.159 1.159 24 C -0.178 4.178 25 C -0.014 4.014 26 N -0.176 5.176 27 C -0.004 4.004 28 H 0.047 0.953 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.117 0.883 40 H 0.127 0.873 41 H 0.106 0.894 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 12.600 8.849 -2.061 15.534 hybrid contribution -0.113 1.062 0.440 1.155 sum 12.487 9.911 -1.621 16.024 Atomic orbital electron populations 1.22951 0.79610 1.04135 0.99901 1.88031 1.21418 1.27869 1.93346 1.24069 0.98192 0.84206 0.82951 1.86133 1.56549 1.61806 1.21116 1.18526 0.88119 0.95952 0.92287 1.20047 0.93102 0.99119 0.98897 1.20673 1.00956 0.96918 0.97825 1.20772 0.98880 0.98560 0.96579 1.21008 0.96358 0.97340 0.99168 1.21281 0.93051 1.00733 0.98470 1.19153 0.93988 0.92673 0.94070 1.17506 0.90060 0.92420 1.19195 1.20335 0.91777 0.97520 0.93443 1.20644 0.96091 0.94703 1.15263 1.18464 0.91319 0.90222 0.87426 1.19695 0.90363 1.10411 1.22683 0.88497 1.26458 0.94043 0.96428 0.97516 1.69565 1.01028 1.35146 1.33749 0.86189 0.80308 0.79680 0.79185 1.18884 1.21576 1.15944 1.16645 0.93359 0.83928 1.23866 1.25677 0.91676 0.92562 0.91484 1.81048 1.09367 1.12912 1.14317 1.20557 0.94087 0.93355 0.92400 0.95303 0.89444 0.91511 0.89923 0.89255 0.91256 0.91918 0.91930 0.86504 0.86415 0.85773 0.88327 0.87300 0.89404 0.87974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.31 101.05 1.04 1.53 16 2 O -0.39 -6.31 10.34 -59.04 -0.61 -6.92 16 3 C 0.22 2.91 6.38 101.05 0.64 3.56 16 4 O -0.34 -5.15 8.38 -42.87 -0.36 -5.51 16 5 C 0.09 1.46 5.54 -38.75 -0.21 1.25 16 6 C -0.11 -1.46 5.86 -104.51 -0.61 -2.07 16 7 C -0.11 -1.08 9.76 36.01 0.35 -0.73 16 8 C -0.13 -1.57 9.69 -39.50 -0.38 -1.95 16 9 C -0.12 -1.51 10.03 -39.62 -0.40 -1.91 16 10 C -0.12 -1.72 9.61 -39.20 -0.38 -2.10 16 11 C 0.00 0.03 5.37 -104.74 -0.56 -0.53 16 12 C -0.19 -3.50 3.95 -104.83 -0.41 -3.91 16 13 C -0.01 -0.22 7.21 -39.72 -0.29 -0.51 16 14 C -0.25 -5.10 6.22 -39.32 -0.24 -5.34 16 15 C 0.13 2.93 5.32 -104.61 -0.56 2.37 16 16 C -0.41 -9.87 9.05 -38.00 -0.34 -10.21 16 17 H 0.10 2.59 7.64 -52.48 -0.40 2.19 16 18 C 0.08 1.87 5.47 -17.29 -0.09 1.78 16 19 N -0.77 -18.61 13.92 55.57 0.77 -17.83 16 20 Si 0.92 18.54 24.41 -169.99 -4.15 14.39 16 21 H -0.26 -5.04 6.53 56.52 0.37 -4.67 16 22 H -0.29 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.24 -4.86 6.82 56.52 0.39 -4.47 16 24 C -0.17 -3.69 5.93 -104.27 -0.62 -4.31 16 25 C 0.30 6.76 14.36 -22.47 -0.32 6.44 16 26 N -0.50 -11.89 18.54 41.84 0.78 -11.11 16 27 C 0.02 0.33 9.30 -38.83 -0.36 -0.03 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 30 H 0.07 1.16 5.22 -51.93 -0.27 0.89 16 31 H 0.08 0.96 6.97 -51.92 -0.36 0.60 16 32 H 0.09 0.98 8.00 -51.93 -0.42 0.56 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 35 H 0.06 0.61 5.81 -51.93 -0.30 0.31 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 38 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.10 1.78 8.06 -52.48 -0.42 1.36 16 40 H 0.11 2.22 4.23 -52.49 -0.22 2.00 16 41 H 0.29 6.33 8.29 -40.82 -0.34 6.00 16 42 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 354.35 15.07 5.34 5.34 Total: -1.00 -26.27 354.35 -6.94 -33.21 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -4.96 Total: 5.13 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -3.75 Total: -16.70 kcal Atomic # 7 Polarization: -30.50 SS G_CDS: 1.55 Total: -28.95 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.97 Total: -12.43 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -4.15 Total: 14.39 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -26.27 -6.94 -33.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244659568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.478 kcal (2) G-P(sol) polarization free energy of solvation -26.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds