Wall clock time and date at job start Tue Mar 31 2020 14:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00244 * 2 1 4 4 O 1.42896 * 109.47133 * 77.57533 * 3 2 1 5 5 C 1.35783 * 117.00352 * 76.18909 * 4 3 2 6 6 C 1.38576 * 120.13358 * 82.54727 * 5 4 3 7 7 C 1.50701 * 119.96039 * 359.97438 * 6 5 4 8 8 C 1.38189 * 120.08019 * 179.79311 * 6 5 4 9 9 C 1.38503 * 120.36145 * 0.46208 * 8 6 5 10 10 C 1.37879 * 120.28039 * 359.79308 * 9 8 6 11 11 C 1.39601 * 119.90565 * 359.97438 * 10 9 8 12 12 C 1.47886 * 120.17690 * 180.02562 * 11 10 9 13 13 C 1.40038 * 119.50533 * 123.19350 * 12 11 10 14 14 C 1.35965 * 121.18989 * 179.74841 * 13 12 11 15 15 C 1.41070 * 120.11505 * 0.52551 * 14 13 12 16 16 C 1.40406 * 120.48705 * 179.75843 * 15 14 13 17 17 H 1.08007 * 120.00067 * 150.22664 * 16 15 14 18 18 C 1.40284 * 119.99980 * 330.22854 * 16 15 14 19 19 N 1.30646 * 119.99551 * 166.52448 * 18 16 15 20 20 Si 1.86797 * 120.00119 * 346.52726 * 18 16 15 21 21 H 1.48498 * 109.47080 * 90.27771 * 20 18 16 22 22 H 1.48503 * 109.46777 * 210.27767 * 20 18 16 23 23 H 1.48493 * 109.47192 * 330.27849 * 20 18 16 24 24 C 1.46657 * 119.02685 * 359.73876 * 15 14 13 25 25 C 1.43200 * 120.56014 * 180.02562 * 24 15 14 26 26 N 5.69101 * 67.56991 * 151.01899 * 2 1 3 27 27 C 1.39058 * 118.87679 * 359.97438 * 24 15 14 28 28 H 1.08996 * 109.47087 * 66.94988 * 1 2 3 29 29 H 1.08999 * 109.47004 * 186.95016 * 1 2 3 30 30 H 1.09001 * 109.46707 * 306.95439 * 1 2 3 31 31 H 1.09010 * 109.47080 * 197.57446 * 3 2 1 32 32 H 1.08994 * 109.47355 * 317.56784 * 3 2 1 33 33 H 1.09002 * 109.46710 * 90.00086 * 7 6 5 34 34 H 1.08995 * 109.47004 * 210.00291 * 7 6 5 35 35 H 1.08998 * 109.46953 * 330.00231 * 7 6 5 36 36 H 1.07993 * 119.81558 * 180.23512 * 8 6 5 37 37 H 1.08004 * 119.86495 * 179.76689 * 9 8 6 38 38 H 1.07994 * 120.04610 * 179.97438 * 10 9 8 39 39 H 1.08004 * 119.40784 * 0.02562 * 13 12 11 40 40 H 1.08002 * 119.94909 * 180.26727 * 14 13 12 41 41 H 0.97008 * 119.99941 * 180.02562 * 19 18 16 42 42 H 1.07995 * 120.09824 * 179.97438 * 27 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 1.9392 1.8584 1.3157 5 6 2.8270 1.3900 2.2301 6 6 4.1135 1.9027 2.2767 7 6 4.5290 2.9820 1.3104 8 6 5.0148 1.4282 3.2106 9 6 4.6436 0.4325 4.0988 10 6 3.3690 -0.0920 4.0622 11 6 2.4478 0.3823 3.1267 12 6 1.0789 -0.1756 3.0825 13 6 -0.0199 0.6814 3.2209 14 6 -1.2931 0.2060 3.1805 15 6 -1.5282 -1.1742 3.0075 16 6 -2.8396 -1.6741 2.9696 17 1 -3.0639 -2.5587 2.3919 18 6 -3.8587 -1.0248 3.6822 19 7 -5.1097 -1.3185 3.4466 20 14 -3.4270 0.2599 4.9677 21 1 -3.3689 1.5992 4.3291 22 1 -4.4631 0.2632 6.0316 23 1 -2.1058 -0.0616 5.5645 24 6 -0.3826 -2.0790 2.8673 25 6 -0.5833 -3.4857 2.6897 26 7 -0.7424 -4.6017 2.5488 27 6 0.9018 -1.5478 2.9088 28 1 -0.3633 0.4024 -0.9456 29 1 -0.3633 -1.0201 0.1244 30 1 -0.3633 0.6178 0.8212 31 1 3.0531 1.2388 -0.3103 32 1 1.4652 1.9458 -0.6933 33 1 4.3193 3.9593 1.7452 34 1 5.5964 2.8963 1.1071 35 1 3.9719 2.8709 0.3802 36 1 6.0152 1.8335 3.2456 37 1 5.3557 0.0649 4.8229 38 1 3.0837 -0.8686 4.7563 39 1 0.1468 1.7397 3.3579 40 1 -2.1260 0.8856 3.2851 41 1 -5.8145 -0.8693 3.9391 42 1 1.7596 -2.1961 2.8080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244659568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:44 Heat of formation + Delta-G solvation = -32.138948 kcal Electronic energy + Delta-G solvation = -27384.081840 eV Core-core repulsion = 23679.476766 eV Total energy + Delta-G solvation = -3704.605074 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.22782 -39.53909 -38.89018 -37.11764 -36.97186 -35.90093 -34.01090 -32.39487 -31.97057 -30.48266 -28.57484 -27.59132 -27.05611 -25.62566 -24.17784 -23.55648 -22.52023 -21.78993 -19.53645 -19.08937 -18.68811 -17.69491 -17.46409 -17.14425 -16.50498 -16.24487 -15.95243 -15.89044 -15.61774 -15.15866 -14.96461 -14.62681 -14.54616 -14.39680 -14.13163 -13.97065 -13.71859 -13.55724 -13.33607 -13.19937 -13.13860 -12.97510 -12.70571 -12.55071 -12.39617 -12.22764 -11.97983 -11.91574 -11.67411 -11.61384 -11.16677 -11.01781 -10.86104 -9.82078 -9.54577 -9.31374 -9.08294 -9.02232 -6.64311 0.20206 0.35608 0.47517 0.91082 1.28091 1.41626 1.51242 1.97558 2.05521 2.27547 2.57466 2.63820 2.97296 3.17993 3.45480 3.51072 3.98455 4.06856 4.15324 4.22630 4.25784 4.31009 4.47393 4.51663 4.56167 4.64596 4.69037 4.73595 4.79373 4.84917 4.87788 4.92073 5.07474 5.10174 5.14276 5.35355 5.35639 5.53937 5.59174 5.69496 5.74536 5.77182 5.94417 5.98287 6.03340 6.16746 6.19703 6.50066 6.58973 6.75245 6.88881 7.98018 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014403 B = 0.004569 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.597182 B = 6127.046671 C = 6245.650483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.405 6.405 3 C 0.211 3.789 4 O -0.348 6.348 5 C 0.083 3.917 6 C -0.115 4.115 7 C -0.107 4.107 8 C -0.120 4.120 9 C -0.118 4.118 10 C -0.126 4.126 11 C -0.037 4.037 12 C -0.158 4.158 13 C -0.008 4.008 14 C -0.247 4.247 15 C 0.131 3.869 16 C -0.446 4.446 17 H 0.054 0.946 18 C 0.050 3.950 19 N -0.819 5.819 20 Si 0.967 3.033 21 H -0.242 1.242 22 H -0.279 1.279 23 H -0.243 1.243 24 C -0.182 4.182 25 C 0.301 3.699 26 N -0.524 5.524 27 C 0.015 3.985 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.303 0.697 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.074 13.788 -1.487 21.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.325 6.325 3 C 0.099 3.901 4 O -0.267 6.267 5 C 0.039 3.961 6 C -0.115 4.115 7 C -0.163 4.163 8 C -0.138 4.138 9 C -0.136 4.136 10 C -0.144 4.144 11 C -0.037 4.037 12 C -0.160 4.160 13 C -0.027 4.027 14 C -0.266 4.266 15 C 0.126 3.874 16 C -0.473 4.473 17 H 0.072 0.928 18 C -0.169 4.169 19 N -0.442 5.442 20 Si 0.789 3.211 21 H -0.167 1.167 22 H -0.206 1.206 23 H -0.166 1.166 24 C -0.188 4.188 25 C -0.008 4.008 26 N -0.204 5.204 27 C -0.006 4.006 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.120 0.880 32 H 0.133 0.867 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.168 0.832 37 H 0.164 0.836 38 H 0.143 0.857 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.114 0.886 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 16.473 11.985 -1.702 20.443 hybrid contribution -0.923 0.173 0.254 0.973 sum 15.550 12.158 -1.447 19.792 Atomic orbital electron populations 1.22784 0.80120 1.02380 1.00648 1.88004 1.20995 1.30030 1.93482 1.24463 0.99499 0.83459 0.82673 1.86117 1.56968 1.61836 1.21733 1.18716 0.89215 0.95831 0.92303 1.20395 0.92155 0.99423 0.99547 1.20742 1.02367 0.96067 0.97127 1.21233 1.00069 0.97395 0.95082 1.21341 0.95796 0.96929 0.99562 1.21392 0.93802 1.00884 0.98316 1.19173 0.93273 0.94755 0.96548 1.17783 0.91502 0.91737 1.14941 1.20539 0.91217 0.98500 0.92481 1.20684 0.97048 0.93739 1.15089 1.18499 0.90601 0.91138 0.87172 1.19514 0.92147 1.10386 1.25259 0.92824 1.27086 0.93604 0.97788 0.98462 1.69590 1.01883 1.37191 1.35558 0.85506 0.79789 0.78495 0.77332 1.16713 1.20597 1.16607 1.16837 0.94270 0.83211 1.24453 1.26023 0.90945 0.92946 0.90896 1.81015 1.10167 1.13738 1.15431 1.20692 0.93390 0.94222 0.92313 0.92920 0.92026 0.92825 0.87994 0.86748 0.90538 0.89722 0.91728 0.83204 0.83571 0.85719 0.86608 0.86907 0.88552 0.86760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.19 10.31 113.37 1.17 2.35 16 2 O -0.41 -12.63 10.34 -126.21 -1.31 -13.93 16 3 C 0.21 5.04 6.38 113.37 0.72 5.76 16 4 O -0.35 -9.62 8.38 -68.35 -0.57 -10.20 16 5 C 0.08 2.30 5.54 22.81 0.13 2.42 16 6 C -0.11 -2.51 5.86 -19.80 -0.12 -2.63 16 7 C -0.11 -1.65 9.76 71.24 0.70 -0.96 16 8 C -0.12 -2.29 9.69 22.32 0.22 -2.07 16 9 C -0.12 -2.46 10.03 22.25 0.22 -2.23 16 10 C -0.13 -3.34 9.61 22.51 0.22 -3.13 16 11 C -0.04 -1.14 5.37 -19.94 -0.11 -1.25 16 12 C -0.16 -5.60 3.95 -20.00 -0.08 -5.68 16 13 C -0.01 -0.31 7.21 22.18 0.16 -0.15 16 14 C -0.25 -10.07 6.22 22.44 0.14 -9.93 16 15 C 0.13 6.05 5.32 -19.86 -0.11 5.94 16 16 C -0.45 -23.14 9.05 23.30 0.21 -22.93 16 17 H 0.05 3.15 7.64 -2.91 -0.02 3.13 16 18 C 0.05 2.46 5.47 85.37 0.47 2.92 16 19 N -0.82 -41.49 13.92 21.88 0.30 -41.19 16 20 Si 0.97 38.15 24.41 68.60 1.67 39.82 16 21 H -0.24 -8.69 6.53 99.48 0.65 -8.04 16 22 H -0.28 -10.51 7.11 99.48 0.71 -9.80 16 23 H -0.24 -9.71 6.82 99.48 0.68 -9.03 16 24 C -0.18 -8.03 5.93 -19.64 -0.12 -8.14 16 25 C 0.30 14.38 14.36 88.33 1.27 15.65 16 26 N -0.52 -26.16 18.54 19.01 0.35 -25.81 16 27 C 0.01 0.56 9.30 22.76 0.21 0.77 16 28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.05 1.84 5.22 -2.39 -0.01 1.83 16 31 H 0.10 2.02 6.97 -2.38 -0.02 2.01 16 32 H 0.12 2.13 8.00 -2.39 -0.02 2.11 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 35 H 0.06 0.98 5.81 -2.39 -0.01 0.97 16 36 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 37 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 38 H 0.12 3.20 8.06 -2.91 -0.02 3.18 16 39 H 0.12 3.89 8.06 -2.91 -0.02 3.86 16 40 H 0.11 4.51 4.23 -2.91 -0.01 4.50 16 41 H 0.30 13.60 8.29 -92.70 -0.77 12.83 16 42 H 0.11 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -60.00 354.35 6.73 -53.27 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.97 Total: 21.32 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: 5.30 Total: -23.28 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: 0.66 Total: -67.00 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -1.88 Total: -24.13 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 1.67 Total: 39.82 kcal Total: -60.00 6.73 -53.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244659568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.129 kcal (2) G-P(sol) polarization free energy of solvation -59.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds