Wall clock time and date at job start Tue Mar 31 2020 13:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38251 * 119.99766 * 2 1 4 4 C 1.38213 * 119.99957 * 179.72473 * 3 2 1 5 5 C 1.38257 * 119.99676 * 0.50843 * 4 3 2 6 6 S 1.76208 * 119.99864 * 179.76693 * 5 4 3 7 7 O 1.42098 * 106.39928 * 156.18659 * 6 5 4 8 8 O 1.42096 * 106.40111 * 23.26233 * 6 5 4 9 9 N 1.65603 * 107.21505 * 269.72842 * 6 5 4 10 10 C 1.47018 * 125.65059 * 90.00120 * 9 6 5 11 11 C 1.54325 * 107.40412 * 180.94353 * 10 9 6 12 12 C 1.55552 * 102.75696 * 22.23822 * 11 10 9 13 13 C 1.47430 * 125.64407 * 269.95475 * 9 6 5 14 14 C 1.38207 * 120.00280 * 359.49267 * 5 4 3 15 15 C 1.38214 * 120.00042 * 179.97438 * 2 1 3 16 16 C 1.50693 * 120.00198 * 0.02562 * 15 2 1 17 17 C 1.52997 * 109.47587 * 85.01949 * 16 15 2 18 18 C 1.50693 * 109.47587 * 179.97438 * 17 16 15 19 19 H 1.08007 * 120.00194 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00536 * 180.02562 * 18 17 16 21 21 N 1.31507 * 120.00482 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99521 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47258 * 90.00007 * 22 20 18 24 24 H 1.48504 * 109.46968 * 209.99991 * 22 20 18 25 25 H 1.48498 * 109.47405 * 330.00125 * 22 20 18 26 26 H 1.08995 * 109.47238 * 270.01758 * 1 2 3 27 27 H 1.08996 * 109.46887 * 30.02307 * 1 2 3 28 28 H 1.08998 * 109.46701 * 150.02489 * 1 2 3 29 29 H 1.08008 * 120.00266 * 359.97438 * 3 2 1 30 30 H 1.08000 * 120.00202 * 180.27290 * 4 3 2 31 31 H 1.09002 * 109.88241 * 300.43881 * 10 9 6 32 32 H 1.09000 * 109.88049 * 61.45011 * 10 9 6 33 33 H 1.08993 * 110.72531 * 140.63023 * 11 10 9 34 34 H 1.09000 * 110.72094 * 263.91129 * 11 10 9 35 35 H 1.08997 * 110.96565 * 206.40316 * 12 11 10 36 36 H 1.09000 * 111.02984 * 82.56372 * 12 11 10 37 37 H 1.08997 * 110.36526 * 274.74970 * 13 9 6 38 38 H 1.08992 * 110.36633 * 36.96435 * 13 9 6 39 39 H 1.08002 * 120.00320 * 180.27418 * 14 5 4 40 40 H 1.09002 * 109.47396 * 205.02389 * 16 15 2 41 41 H 1.09001 * 109.47414 * 325.02075 * 16 15 2 42 42 H 1.09002 * 109.47112 * 300.00614 * 17 16 15 43 43 H 1.09000 * 109.47041 * 60.00009 * 17 16 15 44 44 H 0.96997 * 120.00226 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0058 5 6 4.2717 0.0000 0.0009 6 16 6.0338 0.0001 0.0020 7 8 6.4346 -1.2495 0.5471 8 8 6.4346 1.2500 0.5462 9 7 6.5249 -0.0004 -1.5795 10 6 6.7790 1.1940 -2.3982 11 6 7.1905 0.7105 -3.8048 12 6 6.5945 -0.7251 -3.8625 13 6 6.7806 -1.1987 -2.3994 14 6 3.5807 -1.1969 0.0009 15 6 2.1981 -1.1970 0.0005 16 6 1.4447 -2.5020 0.0005 17 6 1.0818 -2.8815 -1.4365 18 6 0.3289 -4.1869 -1.4366 19 1 0.1288 -4.6950 -0.5047 20 6 -0.1046 -4.7328 -2.6262 21 7 -0.7620 -5.8718 -2.6262 22 14 0.2421 -3.8545 -4.2379 23 1 1.5421 -4.3191 -4.7853 24 1 -0.8402 -4.1565 -5.2089 25 1 0.3000 -2.3897 -4.0010 26 1 -0.3633 0.0003 1.0276 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5134 29 1 1.6582 2.1327 -0.0004 30 1 4.1204 2.1327 0.0102 31 1 5.8739 1.7979 -2.4638 32 1 7.5849 1.7809 -1.9575 33 1 6.7502 1.3442 -4.5746 34 1 8.2759 0.6828 -3.9009 35 1 7.1583 -1.3541 -4.5514 36 1 5.5391 -0.6999 -4.1338 37 1 7.7986 -1.5554 -2.2426 38 1 6.0632 -1.9832 -2.1587 39 1 4.1207 -2.1322 0.0015 40 1 2.0693 -3.2822 0.4357 41 1 0.5336 -2.3956 0.5893 42 1 0.4572 -2.1013 -1.8716 43 1 1.9929 -2.9880 -2.0253 44 1 -1.0673 -6.2556 -3.4630 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060595.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:48 Heat of formation + Delta-G solvation = -85.249144 kcal Electronic energy + Delta-G solvation = -25661.715997 eV Core-core repulsion = 22090.251843 eV Total energy + Delta-G solvation = -3571.464154 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.73422 -39.23337 -38.45773 -37.07563 -36.15790 -34.41851 -33.53765 -31.86589 -31.21343 -29.92174 -28.45076 -27.01937 -23.69902 -23.61675 -22.92897 -22.09879 -21.90687 -19.99025 -19.15840 -18.71042 -18.36658 -17.43250 -16.95728 -16.43203 -16.38003 -16.16751 -15.27198 -15.06818 -14.89801 -14.72495 -14.68361 -14.60958 -14.34314 -14.22481 -13.60599 -13.52239 -13.37991 -13.28897 -13.20445 -13.19298 -13.10147 -12.87885 -12.69913 -12.46284 -12.13526 -12.07794 -12.06137 -11.96317 -11.69162 -11.56877 -11.53860 -11.28076 -10.78385 -10.14278 -9.98890 -9.74968 -8.30902 -6.35381 -0.78528 -0.21542 0.28391 1.33378 1.34713 1.46565 1.86952 2.33751 2.42113 2.68652 3.04330 3.06457 3.61417 3.66663 3.80838 3.85858 3.88858 4.11080 4.18672 4.23812 4.36284 4.41034 4.55848 4.57843 4.61769 4.66700 4.69932 4.78061 4.84793 4.87603 4.98042 4.99518 5.03025 5.06146 5.07137 5.12453 5.17945 5.19259 5.38206 5.40884 5.43899 5.44478 5.60024 5.65917 5.88647 6.25568 6.72088 7.29227 8.85851 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012261 B = 0.004377 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.171150 B = 6394.970283 C = 7521.556036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.032 4.032 3 C -0.136 4.136 4 C -0.031 4.031 5 C -0.688 4.688 6 S 2.726 3.274 7 O -0.986 6.986 8 O -0.973 6.973 9 N -1.012 6.012 10 C 0.106 3.894 11 C -0.119 4.119 12 C -0.131 4.131 13 C 0.106 3.894 14 C -0.033 4.033 15 C -0.107 4.107 16 C -0.065 4.065 17 C 0.002 3.998 18 C -0.532 4.532 19 H 0.034 0.966 20 C 0.008 3.992 21 N -0.949 5.949 22 Si 0.945 3.055 23 H -0.266 1.266 24 H -0.282 1.282 25 H -0.247 1.247 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.165 0.835 30 H 0.159 0.841 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.129 0.871 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.026 0.974 43 H 0.012 0.988 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.396 19.975 -2.444 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.033 4.033 3 C -0.154 4.154 4 C -0.050 4.050 5 C -0.776 4.776 6 S 2.820 3.180 7 O -0.976 6.976 8 O -0.964 6.964 9 N -0.852 5.852 10 C -0.018 4.018 11 C -0.158 4.158 12 C -0.170 4.170 13 C -0.018 4.018 14 C -0.053 4.053 15 C -0.108 4.108 16 C -0.102 4.102 17 C -0.035 4.035 18 C -0.570 4.570 19 H 0.052 0.948 20 C -0.189 4.189 21 N -0.590 5.590 22 Si 0.768 3.232 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.170 1.170 26 H 0.108 0.892 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.183 0.817 30 H 0.177 0.823 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.147 0.853 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.044 0.956 43 H 0.030 0.970 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.839 19.856 -1.717 24.848 hybrid contribution -0.956 -0.728 -0.628 1.355 sum 13.883 19.129 -2.345 23.752 Atomic orbital electron populations 1.21092 0.89566 1.04216 1.03834 1.20447 0.97592 0.92545 0.92682 1.21489 0.94012 0.98409 1.01491 1.21130 0.95164 0.96397 0.92281 1.30830 1.26573 0.99697 1.20458 1.00658 0.73428 0.72291 0.71661 1.93539 1.82029 1.45318 1.76739 1.93522 1.81823 1.44448 1.76587 1.58494 1.82006 1.14918 1.29814 1.22048 1.01725 0.86030 0.92032 1.22720 1.02318 0.95988 0.94791 1.22890 1.02229 0.97380 0.94475 1.22274 1.01883 0.86274 0.91419 1.20822 0.94312 0.96818 0.93339 1.20195 0.93773 0.95972 1.00893 1.20459 0.99022 0.92317 0.98436 1.19439 0.95557 0.94867 0.93646 1.21438 1.35457 1.06441 0.93653 0.94785 1.25954 0.94284 0.95391 1.03252 1.70057 1.40040 1.20517 1.28364 0.85737 0.78355 0.80440 0.78653 1.19152 1.20784 1.17008 0.89160 0.88788 0.91756 0.81711 0.82315 0.90709 0.90363 0.88317 0.89155 0.88055 0.91178 0.89952 0.91545 0.85279 0.92445 0.90992 0.95608 0.96952 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.22 71.24 0.66 -2.60 16 2 C -0.03 -0.92 5.88 -19.87 -0.12 -1.03 16 3 C -0.14 -3.11 9.70 22.27 0.22 -2.89 16 4 C -0.03 -0.73 9.52 22.27 0.21 -0.52 16 5 C -0.69 -19.31 5.97 22.27 0.13 -19.18 16 6 S 2.73 73.67 5.94 -56.49 -0.34 73.33 16 7 O -0.99 -32.87 16.87 -128.00 -2.16 -35.03 16 8 O -0.97 -28.28 16.86 -128.00 -2.16 -30.44 16 9 N -1.01 -21.36 3.70 -506.43 -1.87 -23.23 16 10 C 0.11 1.61 6.98 86.73 0.61 2.21 16 11 C -0.12 -1.28 6.98 31.92 0.22 -1.05 16 12 C -0.13 -1.83 7.10 32.13 0.23 -1.61 16 13 C 0.11 2.03 6.98 86.85 0.61 2.64 16 14 C -0.03 -1.09 9.16 22.27 0.20 -0.89 16 15 C -0.11 -3.64 5.13 -19.87 -0.10 -3.74 16 16 C -0.06 -2.57 4.59 29.84 0.14 -2.43 16 17 C 0.00 0.10 3.83 29.84 0.11 0.22 16 18 C -0.53 -30.33 9.66 25.60 0.25 -30.08 16 19 H 0.03 2.14 7.99 -2.91 -0.02 2.11 16 20 C 0.01 0.48 5.47 84.66 0.46 0.94 16 21 N -0.95 -59.04 13.96 21.45 0.30 -58.74 16 22 Si 0.94 43.40 27.47 68.60 1.88 45.28 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.25 -10.46 6.54 99.48 0.65 -9.81 16 26 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.09 1.80 8.09 -2.39 -0.02 1.79 16 28 H 0.06 1.97 5.43 -2.39 -0.01 1.95 16 29 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 30 H 0.16 2.93 7.61 -2.91 -0.02 2.90 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.13 4.27 7.62 -2.91 -0.02 4.25 16 40 H 0.06 2.33 8.05 -2.39 -0.02 2.31 16 41 H 0.07 2.77 6.99 -2.39 -0.02 2.75 16 42 H 0.03 1.15 5.97 -2.39 -0.01 1.14 16 43 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 44 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -74.78 366.67 0.41 -74.37 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.93 Total: 14.49 kcal Atomic # 6 Polarization: -63.85 SS G_CDS: 3.83 Total: -60.02 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -1.57 Total: -81.98 kcal Atomic # 8 Polarization: -61.15 SS G_CDS: -4.32 Total: -65.47 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.88 Total: 45.28 kcal Atomic # 16 Polarization: 73.67 SS G_CDS: -0.34 Total: 73.33 kcal Total: -74.78 0.41 -74.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060595.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.882 kcal (2) G-P(sol) polarization free energy of solvation -74.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds