Wall clock time and date at job start Tue Mar 31 2020 13:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00325 * 2 1 4 4 H 1.48504 * 109.46890 * 269.99805 * 3 2 1 5 5 H 1.48496 * 109.46954 * 29.99568 * 3 2 1 6 6 H 1.48498 * 109.47296 * 150.00105 * 3 2 1 7 7 C 1.37886 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99765 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99948 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46773 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46640 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.46796 * 179.97438 * 11 10 9 13 13 C 1.38256 * 120.00163 * 89.99917 * 12 11 10 14 14 C 1.38212 * 119.99932 * 180.02562 * 13 12 11 15 15 C 1.38255 * 120.00686 * 359.97438 * 14 13 12 16 16 C 1.38209 * 119.99372 * 0.02562 * 15 14 13 17 17 S 1.76204 * 120.00079 * 179.97438 * 16 15 14 18 18 O 1.42105 * 106.39972 * 336.45673 * 17 16 15 19 19 O 1.42098 * 106.40426 * 203.53845 * 17 16 15 20 20 N 1.65595 * 107.21987 * 89.99558 * 17 16 15 21 21 C 1.47022 * 125.65174 * 269.69884 * 20 17 16 22 22 C 1.54309 * 107.27545 * 180.96757 * 21 20 17 23 23 C 1.55150 * 102.86683 * 22.52168 * 22 21 20 24 24 C 1.47427 * 125.64717 * 89.99829 * 20 17 16 25 25 C 1.38220 * 119.99908 * 270.27484 * 12 11 10 26 26 H 0.97008 * 119.99589 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46923 * 59.99554 * 9 7 2 28 28 H 1.08994 * 109.46833 * 299.99386 * 9 7 2 29 29 H 1.08991 * 109.47246 * 59.99716 * 10 9 7 30 30 H 1.09003 * 109.46804 * 299.99541 * 10 9 7 31 31 H 1.08994 * 109.47129 * 60.00102 * 11 10 9 32 32 H 1.08994 * 109.46851 * 299.99439 * 11 10 9 33 33 H 1.08004 * 120.00042 * 359.97438 * 13 12 11 34 34 H 1.08007 * 119.99665 * 179.97438 * 14 13 12 35 35 H 1.07991 * 120.00580 * 179.97438 * 15 14 13 36 36 H 1.09003 * 109.87941 * 300.51387 * 21 20 17 37 37 H 1.08997 * 109.88344 * 61.66999 * 21 20 17 38 38 H 1.09001 * 110.92560 * 264.10414 * 22 21 20 39 39 H 1.09004 * 110.58994 * 140.78667 * 22 21 20 40 40 H 1.09004 * 111.00629 * 206.22656 * 23 22 21 41 41 H 1.09008 * 111.03404 * 82.39573 * 23 22 21 42 42 H 1.09001 * 110.37172 * 274.67953 * 24 20 17 43 43 H 1.09005 * 110.36609 * 36.89229 * 24 20 17 44 44 H 1.07994 * 120.00128 * 0.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5514 -2.6367 0.0012 12 6 6.0537 -4.0576 0.0017 13 6 6.2850 -4.7095 -1.1954 14 6 6.7451 -6.0127 -1.1949 15 6 6.9746 -6.6645 0.0026 16 6 6.7433 -6.0128 1.1993 17 16 7.0351 -6.8435 2.7256 18 8 6.9490 -8.2346 2.4482 19 8 6.2273 -6.1934 3.6971 20 7 8.6078 -6.5482 3.1517 21 6 9.7658 -7.3744 2.7804 22 6 11.0133 -6.7282 3.4187 23 6 10.4145 -5.9008 4.5866 24 6 9.0779 -5.4165 3.9713 25 6 6.2776 -4.7110 1.1989 26 1 -0.4850 0.8401 -0.0004 27 1 3.8745 -0.6809 0.8905 28 1 3.8751 -0.6799 -0.8895 29 1 3.6583 -3.1503 -0.8902 30 1 3.6577 -3.1507 0.8897 31 1 5.9140 -2.1233 0.8916 32 1 5.9154 -2.1227 -0.8884 33 1 6.1054 -4.2006 -2.1309 34 1 6.9255 -6.5221 -2.1301 35 1 7.3337 -7.6829 0.0030 36 1 9.6353 -8.3876 3.1605 37 1 9.8747 -7.3943 1.6961 38 1 11.5224 -6.0783 2.7070 39 1 11.6910 -7.4939 3.7963 40 1 11.0574 -5.0571 4.8377 41 1 10.2378 -6.5282 5.4603 42 1 9.2437 -4.5387 3.3468 43 1 8.3563 -5.1914 4.7568 44 1 6.0923 -4.2034 2.1340 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065559.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:18 Heat of formation + Delta-G solvation = -64.369555 kcal Electronic energy + Delta-G solvation = -24782.879277 eV Core-core repulsion = 21212.320530 eV Total energy + Delta-G solvation = -3570.558747 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.47542 -38.69038 -37.40650 -36.00464 -35.01875 -32.69060 -31.39720 -31.25734 -30.75219 -29.38632 -27.27497 -23.73977 -23.41099 -22.86231 -21.69282 -21.40755 -20.12821 -19.14335 -18.02256 -17.58863 -16.72381 -16.57851 -16.09612 -15.92985 -15.17024 -14.50906 -14.26497 -14.17478 -14.07450 -13.82131 -13.69129 -13.45232 -13.20790 -13.03077 -12.63476 -12.37596 -12.28962 -12.18458 -12.04455 -11.92738 -11.73273 -11.71582 -11.56568 -11.42871 -11.13694 -11.04116 -10.90142 -10.70102 -9.94130 -9.80448 -9.73298 -9.44197 -9.31701 -9.20058 -8.72160 -8.53478 -6.03455 -4.01537 0.13085 0.75557 1.22909 2.73118 3.30029 3.37593 3.40877 3.41341 3.63017 3.88813 4.14810 4.37833 4.45220 4.51962 4.70745 4.75737 4.88015 4.93465 5.04776 5.13847 5.17955 5.26687 5.30143 5.33669 5.39898 5.42790 5.46181 5.52311 5.69937 5.71696 5.78165 5.82790 5.84010 5.92867 6.08243 6.16068 6.18332 6.31369 6.61687 6.63607 6.77521 6.89009 7.29261 7.41725 7.79813 8.55098 9.01982 9.58731 11.10156 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018095 B = 0.002755 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.018879 B =10160.263478 C =10550.908550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.098 4.098 11 C -0.089 4.089 12 C -0.085 4.085 13 C -0.062 4.062 14 C -0.138 4.138 15 C -0.035 4.035 16 C -0.675 4.675 17 S 2.709 3.291 18 O -0.955 6.955 19 O -0.949 6.949 20 N -1.013 6.013 21 C 0.119 3.881 22 C -0.129 4.129 23 C -0.129 4.129 24 C 0.112 3.888 25 C -0.020 4.020 26 H 0.263 0.737 27 H 0.016 0.984 28 H 0.011 0.989 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.135 0.865 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.480 -14.401 4.341 30.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.136 4.136 11 C -0.126 4.126 12 C -0.086 4.086 13 C -0.080 4.080 14 C -0.157 4.157 15 C -0.054 4.054 16 C -0.763 4.763 17 S 2.802 3.198 18 O -0.946 6.946 19 O -0.940 6.940 20 N -0.852 5.852 21 C -0.007 4.007 22 C -0.168 4.168 23 C -0.168 4.168 24 C -0.013 4.013 25 C -0.039 4.039 26 H 0.072 0.928 27 H 0.035 0.965 28 H 0.029 0.971 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 25.628 -14.802 4.788 29.980 hybrid contribution 0.371 1.357 -0.837 1.637 sum 25.999 -13.445 3.951 29.535 Atomic orbital electron populations 1.69922 1.06323 1.26855 1.51192 1.25054 0.94742 0.99199 0.94614 0.86757 0.80362 0.83604 0.78418 1.20361 1.21398 1.19001 1.21160 0.89547 0.94482 1.50711 0.91069 1.19592 0.97189 0.92100 0.96239 1.21498 0.90430 1.00099 1.01580 1.20877 0.98491 0.90373 1.02876 1.20308 0.97765 0.97752 0.92739 1.21461 0.93912 0.94338 0.98295 1.21250 1.01149 0.95237 0.98076 1.20793 0.94592 0.98761 0.91283 1.30843 1.17541 1.08032 1.19867 1.01421 0.71141 0.73508 0.73733 1.93566 1.85210 1.29928 1.85896 1.93599 1.65128 1.76943 1.58281 1.58684 1.23738 1.37175 1.65616 1.21738 0.84745 0.94507 0.99673 1.22635 0.96499 0.99828 0.97824 1.22766 0.95684 1.00353 0.98031 1.22116 0.96692 0.88358 0.94119 1.20850 0.92162 0.91700 0.99209 0.92753 0.96545 0.97066 0.92636 0.92451 0.90983 0.91007 0.85079 0.85215 0.84763 0.90858 0.91589 0.90488 0.90047 0.89786 0.90437 0.91263 0.89557 0.84315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.29 13.96 55.43 0.77 -27.52 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.82 27.47 -169.99 -4.67 17.16 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.52 -15.09 9.66 -34.44 -0.33 -15.43 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -1.94 5.14 -26.73 -0.14 -2.08 16 11 C -0.09 -1.37 5.34 -27.88 -0.15 -1.52 16 12 C -0.08 -1.20 5.13 -104.62 -0.54 -1.73 16 13 C -0.06 -0.77 9.70 -39.58 -0.38 -1.15 16 14 C -0.14 -1.52 10.05 -39.58 -0.40 -1.92 16 15 C -0.03 -0.40 9.52 -39.59 -0.38 -0.78 16 16 C -0.68 -8.59 5.97 -39.58 -0.24 -8.83 16 17 S 2.71 33.59 5.94 -107.50 -0.64 32.95 16 18 O -0.96 -13.60 16.86 -57.17 -0.96 -14.56 16 19 O -0.95 -14.54 16.60 -57.17 -0.95 -15.49 16 20 N -1.01 -9.27 3.70 -111.43 -0.41 -9.68 16 21 C 0.12 0.82 6.98 -3.07 -0.02 0.80 16 22 C -0.13 -0.61 6.95 -24.91 -0.17 -0.79 16 23 C -0.13 -0.67 7.08 -24.59 -0.17 -0.85 16 24 C 0.11 0.84 7.11 -2.53 -0.02 0.83 16 25 C -0.02 -0.28 9.18 -39.58 -0.36 -0.64 16 26 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 27 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 28 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 32 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 33 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 34 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.13 1.28 7.62 -52.49 -0.40 0.88 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.69 7.78 -51.93 -0.40 0.28 16 44 H 0.14 1.85 7.61 -52.49 -0.40 1.45 16 LS Contribution 372.25 15.07 5.61 5.61 Total: -1.00 -35.72 372.25 -11.81 -47.52 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -7.05 Total: -3.28 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: -3.51 Total: -32.71 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.36 Total: -37.20 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -1.91 Total: -30.05 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.16 kcal Atomic # 16 Polarization: 33.59 SS G_CDS: -0.64 Total: 32.95 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.72 -11.81 -47.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065559.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.846 kcal (2) G-P(sol) polarization free energy of solvation -35.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds