Wall clock time and date at job start Tue Mar 31 2020 13:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00325 * 2 1 4 4 H 1.48504 * 109.46890 * 269.99805 * 3 2 1 5 5 H 1.48496 * 109.46954 * 29.99568 * 3 2 1 6 6 H 1.48498 * 109.47296 * 150.00105 * 3 2 1 7 7 C 1.37886 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99765 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99948 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46773 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46640 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.46796 * 179.97438 * 11 10 9 13 13 C 1.38256 * 120.00163 * 89.99917 * 12 11 10 14 14 C 1.38212 * 119.99932 * 180.02562 * 13 12 11 15 15 C 1.38255 * 120.00686 * 359.97438 * 14 13 12 16 16 C 1.38209 * 119.99372 * 0.02562 * 15 14 13 17 17 S 1.76204 * 120.00079 * 179.97438 * 16 15 14 18 18 O 1.42105 * 106.39972 * 336.45673 * 17 16 15 19 19 O 1.42098 * 106.40426 * 203.53845 * 17 16 15 20 20 N 1.65595 * 107.21987 * 89.99558 * 17 16 15 21 21 C 1.47022 * 125.65174 * 269.69884 * 20 17 16 22 22 C 1.54309 * 107.27545 * 180.96757 * 21 20 17 23 23 C 1.55150 * 102.86683 * 22.52168 * 22 21 20 24 24 C 1.47427 * 125.64717 * 89.99829 * 20 17 16 25 25 C 1.38220 * 119.99908 * 270.27484 * 12 11 10 26 26 H 0.97008 * 119.99589 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46923 * 59.99554 * 9 7 2 28 28 H 1.08994 * 109.46833 * 299.99386 * 9 7 2 29 29 H 1.08991 * 109.47246 * 59.99716 * 10 9 7 30 30 H 1.09003 * 109.46804 * 299.99541 * 10 9 7 31 31 H 1.08994 * 109.47129 * 60.00102 * 11 10 9 32 32 H 1.08994 * 109.46851 * 299.99439 * 11 10 9 33 33 H 1.08004 * 120.00042 * 359.97438 * 13 12 11 34 34 H 1.08007 * 119.99665 * 179.97438 * 14 13 12 35 35 H 1.07991 * 120.00580 * 179.97438 * 15 14 13 36 36 H 1.09003 * 109.87941 * 300.51387 * 21 20 17 37 37 H 1.08997 * 109.88344 * 61.66999 * 21 20 17 38 38 H 1.09001 * 110.92560 * 264.10414 * 22 21 20 39 39 H 1.09004 * 110.58994 * 140.78667 * 22 21 20 40 40 H 1.09004 * 111.00629 * 206.22656 * 23 22 21 41 41 H 1.09008 * 111.03404 * 82.39573 * 23 22 21 42 42 H 1.09001 * 110.37172 * 274.67953 * 24 20 17 43 43 H 1.09005 * 110.36609 * 36.89229 * 24 20 17 44 44 H 1.07994 * 120.00128 * 0.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5514 -2.6367 0.0012 12 6 6.0537 -4.0576 0.0017 13 6 6.2850 -4.7095 -1.1954 14 6 6.7451 -6.0127 -1.1949 15 6 6.9746 -6.6645 0.0026 16 6 6.7433 -6.0128 1.1993 17 16 7.0351 -6.8435 2.7256 18 8 6.9490 -8.2346 2.4482 19 8 6.2273 -6.1934 3.6971 20 7 8.6078 -6.5482 3.1517 21 6 9.7658 -7.3744 2.7804 22 6 11.0133 -6.7282 3.4187 23 6 10.4145 -5.9008 4.5866 24 6 9.0779 -5.4165 3.9713 25 6 6.2776 -4.7110 1.1989 26 1 -0.4850 0.8401 -0.0004 27 1 3.8745 -0.6809 0.8905 28 1 3.8751 -0.6799 -0.8895 29 1 3.6583 -3.1503 -0.8902 30 1 3.6577 -3.1507 0.8897 31 1 5.9140 -2.1233 0.8916 32 1 5.9154 -2.1227 -0.8884 33 1 6.1054 -4.2006 -2.1309 34 1 6.9255 -6.5221 -2.1301 35 1 7.3337 -7.6829 0.0030 36 1 9.6353 -8.3876 3.1605 37 1 9.8747 -7.3943 1.6961 38 1 11.5224 -6.0783 2.7070 39 1 11.6910 -7.4939 3.7963 40 1 11.0574 -5.0571 4.8377 41 1 10.2378 -6.5282 5.4603 42 1 9.2437 -4.5387 3.3468 43 1 8.3563 -5.1914 4.7568 44 1 6.0923 -4.2034 2.1340 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065559.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:18 Heat of formation + Delta-G solvation = -87.381936 kcal Electronic energy + Delta-G solvation = -24783.877169 eV Core-core repulsion = 21212.320530 eV Total energy + Delta-G solvation = -3571.556639 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.45818 -39.24031 -38.47676 -37.08453 -36.57646 -34.61086 -32.40590 -32.22339 -31.86367 -29.90121 -28.87789 -25.33461 -24.36219 -23.51144 -22.74388 -22.06026 -21.79487 -20.01590 -19.08018 -18.75480 -18.44262 -17.38826 -17.06492 -16.76816 -16.37233 -16.20460 -15.39365 -15.25269 -14.98920 -14.86641 -14.69364 -14.37528 -14.32718 -14.22332 -13.68645 -13.54501 -13.38536 -13.33748 -13.29187 -13.28651 -12.81182 -12.72092 -12.59307 -12.37649 -12.13529 -12.04161 -11.89453 -11.77251 -11.51964 -11.46513 -11.43686 -11.34824 -10.77318 -10.37585 -10.02330 -9.80895 -8.30303 -6.35316 -0.80378 -0.21508 0.25768 1.35464 1.38631 1.50773 1.88165 2.36199 2.45014 2.68440 3.05009 3.05533 3.62844 3.65305 3.81179 3.90082 4.00966 4.13515 4.18376 4.23862 4.37540 4.40535 4.41453 4.57017 4.58852 4.60048 4.68195 4.89873 4.91348 4.96037 4.99675 5.01257 5.04002 5.06773 5.07092 5.09575 5.19210 5.25994 5.38203 5.44234 5.47501 5.50927 5.62735 5.66006 5.84760 6.27613 6.73163 7.29342 8.87023 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018095 B = 0.002755 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.018879 B =10160.263478 C =10550.908550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.002 4.002 3 Si 0.958 3.042 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.242 1.242 7 C -0.538 4.538 8 H 0.024 0.976 9 C -0.011 4.011 10 C -0.092 4.092 11 C -0.078 4.078 12 C -0.103 4.103 13 C -0.066 4.066 14 C -0.134 4.134 15 C -0.037 4.037 16 C -0.681 4.681 17 S 2.723 3.277 18 O -0.978 6.978 19 O -0.987 6.987 20 N -1.011 6.011 21 C 0.105 3.895 22 C -0.121 4.121 23 C -0.125 4.125 24 C 0.100 3.900 25 C -0.037 4.037 26 H 0.266 0.734 27 H 0.022 0.978 28 H 0.027 0.973 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.150 0.850 34 H 0.164 0.836 35 H 0.155 0.845 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.165 -13.902 3.375 33.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.198 4.198 3 Si 0.780 3.220 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.166 1.166 7 C -0.576 4.576 8 H 0.042 0.958 9 C -0.049 4.049 10 C -0.130 4.130 11 C -0.115 4.115 12 C -0.104 4.104 13 C -0.084 4.084 14 C -0.152 4.152 15 C -0.057 4.057 16 C -0.769 4.769 17 S 2.817 3.183 18 O -0.968 6.968 19 O -0.978 6.978 20 N -0.852 5.852 21 C -0.019 4.019 22 C -0.160 4.160 23 C -0.164 4.164 24 C -0.024 4.024 25 C -0.057 4.057 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.167 0.833 34 H 0.182 0.818 35 H 0.172 0.828 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 29.328 -14.330 3.826 32.865 hybrid contribution -0.810 1.072 -0.542 1.449 sum 28.518 -13.258 3.284 31.620 Atomic orbital electron populations 1.70094 1.08540 1.28243 1.52696 1.26144 0.95701 1.03945 0.93980 0.85549 0.79505 0.77533 0.79385 1.18778 1.21148 1.16551 1.21556 0.92547 0.92912 1.50550 0.95753 1.19554 0.93521 0.94880 0.96921 1.21341 0.94012 0.97282 1.00358 1.20698 0.94705 0.91907 1.04169 1.20241 0.99274 0.97280 0.93573 1.21752 0.93310 0.95009 0.98303 1.21644 0.99620 0.94713 0.99221 1.21168 0.93800 0.99633 0.91064 1.30848 1.17898 1.07664 1.20477 1.00698 0.71642 0.72696 0.73276 1.93525 1.86019 1.31153 1.86146 1.93546 1.67111 1.77460 1.59642 1.58447 1.23076 1.38089 1.65548 1.22051 0.84750 0.94363 1.00738 1.22658 0.95573 1.00211 0.97578 1.22796 0.94450 1.01119 0.98046 1.22363 0.97730 0.88337 0.93995 1.20898 0.93142 0.92437 0.99193 0.92497 0.95963 0.95513 0.93328 0.94405 0.90303 0.89124 0.83260 0.81820 0.82785 0.91012 0.90488 0.89384 0.88295 0.87841 0.90484 0.90341 0.90759 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.53 13.96 21.45 0.30 -61.23 16 2 C 0.00 -0.09 5.47 84.66 0.46 0.37 16 3 Si 0.96 44.51 27.47 68.60 1.88 46.39 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.24 -10.28 6.54 99.48 0.65 -9.63 16 7 C -0.54 -32.04 9.66 25.60 0.25 -31.79 16 8 H 0.02 1.61 7.99 -2.91 -0.02 1.59 16 9 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 10 C -0.09 -3.66 5.14 30.60 0.16 -3.50 16 11 C -0.08 -2.27 5.34 29.85 0.16 -2.11 16 12 C -0.10 -2.78 5.13 -19.86 -0.10 -2.88 16 13 C -0.07 -1.47 9.70 22.27 0.22 -1.26 16 14 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 15 C -0.04 -0.79 9.52 22.27 0.21 -0.58 16 16 C -0.68 -16.98 5.97 22.27 0.13 -16.85 16 17 S 2.72 68.31 5.94 -56.49 -0.34 67.97 16 18 O -0.98 -27.86 16.86 -128.00 -2.16 -30.02 16 19 O -0.99 -31.65 16.60 -128.00 -2.12 -33.77 16 20 N -1.01 -17.84 3.70 -506.44 -1.87 -19.71 16 21 C 0.11 1.28 6.98 86.72 0.61 1.89 16 22 C -0.12 -0.83 6.95 31.78 0.22 -0.61 16 23 C -0.13 -1.05 7.08 31.98 0.23 -0.82 16 24 C 0.10 1.43 7.11 86.85 0.62 2.05 16 25 C -0.04 -1.03 9.18 22.27 0.20 -0.83 16 26 H 0.27 15.91 8.31 -92.70 -0.77 15.14 16 27 H 0.02 1.01 7.20 -2.39 -0.02 1.00 16 28 H 0.03 1.17 7.57 -2.39 -0.02 1.16 16 29 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 2.18 8.09 -2.39 -0.02 2.16 16 32 H 0.09 2.31 8.09 -2.39 -0.02 2.29 16 33 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 34 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.15 2.58 7.62 -2.92 -0.02 2.56 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 40 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 41 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 42 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.07 1.22 7.78 -2.38 -0.02 1.20 16 44 H 0.13 3.69 7.61 -2.91 -0.02 3.67 16 Total: -1.00 -79.83 372.25 0.31 -79.52 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.91 Total: 10.51 kcal Atomic # 6 Polarization: -63.37 SS G_CDS: 3.71 Total: -59.67 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -1.57 Total: -80.94 kcal Atomic # 8 Polarization: -59.51 SS G_CDS: -4.28 Total: -63.79 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.39 kcal Atomic # 16 Polarization: 68.31 SS G_CDS: -0.34 Total: 67.97 kcal Total: -79.83 0.31 -79.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065559.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.863 kcal (2) G-P(sol) polarization free energy of solvation -79.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds