Wall clock time and date at job start Tue Mar 31 2020 14:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38261 * 119.99932 * 2 1 4 4 C 1.38208 * 120.00168 * 179.97438 * 3 2 1 5 5 C 1.38257 * 119.99834 * 359.75079 * 4 3 2 6 6 C 1.50704 * 120.00215 * 180.27154 * 5 4 3 7 7 C 1.38221 * 120.00040 * 0.50368 * 5 4 3 8 8 S 1.76199 * 119.99923 * 179.76668 * 7 5 4 9 9 O 1.42095 * 106.40309 * 311.82572 * 8 7 5 10 10 O 1.42105 * 106.39907 * 178.91021 * 8 7 5 11 11 N 1.65600 * 107.21973 * 65.36815 * 8 7 5 12 12 C 1.46505 * 119.99754 * 63.64629 * 11 8 7 13 13 H 1.08999 * 109.41325 * 359.49943 * 12 11 8 14 14 C 1.52959 * 109.41081 * 119.35924 * 12 11 8 15 15 C 1.53228 * 109.40181 * 183.70490 * 14 12 11 16 16 C 1.51267 * 108.53840 * 305.36730 * 15 14 12 17 17 C 1.37874 * 120.85231 * 231.33094 * 16 15 14 18 18 N 1.31511 * 120.00020 * 359.97438 * 17 16 15 19 19 Si 1.86802 * 119.99803 * 179.97438 * 17 16 15 20 20 H 1.48504 * 109.47254 * 269.99410 * 19 17 16 21 21 H 1.48504 * 109.46941 * 149.99915 * 19 17 16 22 22 H 1.48494 * 109.47099 * 29.99791 * 19 17 16 23 23 C 1.51273 * 118.29640 * 51.59808 * 16 15 14 24 24 C 1.52957 * 109.41273 * 239.70777 * 12 11 8 25 25 C 1.38214 * 120.00256 * 179.97438 * 2 1 3 26 26 H 1.09007 * 109.47737 * 270.02199 * 1 2 3 27 27 H 1.08999 * 109.47541 * 30.02417 * 1 2 3 28 28 H 1.09002 * 109.47037 * 150.02234 * 1 2 3 29 29 H 1.08000 * 120.00002 * 359.97438 * 3 2 1 30 30 H 1.07998 * 120.00186 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.46922 * 264.63471 * 6 5 4 32 32 H 1.08993 * 109.46845 * 24.63178 * 6 5 4 33 33 H 1.09000 * 109.47290 * 144.63669 * 6 5 4 34 34 H 0.96997 * 119.99790 * 243.64774 * 11 8 7 35 35 H 1.08993 * 109.48672 * 63.72078 * 14 12 11 36 36 H 1.09003 * 109.49315 * 303.68874 * 14 12 11 37 37 H 1.09000 * 109.62215 * 185.65537 * 15 14 12 38 38 H 1.08997 * 109.78557 * 65.17625 * 15 14 12 39 39 H 0.97001 * 119.99780 * 180.02562 * 18 17 16 40 40 H 1.09007 * 109.62448 * 68.11954 * 23 16 15 41 41 H 1.09003 * 109.62742 * 188.68715 * 23 16 15 42 42 H 1.09000 * 109.48430 * 296.27997 * 24 12 11 43 43 H 1.08999 * 109.48104 * 56.31663 * 24 12 11 44 44 H 1.08005 * 119.99496 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2716 0.0001 0.0063 6 6 5.7787 0.0001 0.0130 7 6 3.5806 -1.1969 0.0010 8 16 4.4617 -2.7228 0.0021 9 8 5.4541 -2.6139 -1.0091 10 8 3.4818 -3.7519 0.0217 11 7 5.2713 -2.8204 1.4434 12 6 4.5228 -2.8808 2.7013 13 1 3.4543 -2.8414 2.4894 14 6 4.8497 -4.1881 3.4250 15 6 3.9978 -4.2940 4.6943 16 6 4.2172 -3.0496 5.5259 17 6 4.5513 -3.1408 6.8604 18 7 4.6828 -4.3207 7.4262 19 14 4.8174 -1.5885 7.8648 20 1 6.2458 -1.1893 7.7903 21 1 4.4485 -1.8454 9.2802 22 1 3.9694 -0.4967 7.3226 23 6 4.0544 -1.7025 4.8573 24 6 4.9095 -1.6906 3.5807 25 6 2.1981 -1.1969 0.0005 26 1 -0.3635 0.0004 1.0277 27 1 -0.3634 0.8897 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6582 2.1327 -0.0004 30 1 4.1203 2.1327 0.0010 31 1 6.1465 -0.0982 -1.0083 32 1 6.1400 0.9351 0.4409 33 1 6.1393 -0.8366 0.6113 34 1 6.2410 -2.8375 1.4547 35 1 5.9058 -4.2006 3.6939 36 1 4.6315 -5.0312 2.7694 37 1 4.2983 -5.1730 5.2645 38 1 2.9444 -4.3741 4.4261 39 1 4.9175 -4.3849 8.3652 40 1 3.0066 -1.5451 4.6010 41 1 4.3912 -0.9156 5.5323 42 1 5.9644 -1.7621 3.8459 43 1 4.7337 -0.7634 3.0354 44 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254814514.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:14 Heat of formation + Delta-G solvation = -73.425438 kcal Electronic energy + Delta-G solvation = -26406.978291 eV Core-core repulsion = 22836.026852 eV Total energy + Delta-G solvation = -3570.951440 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.62783 -37.56836 -37.04350 -35.67587 -34.16352 -33.64380 -31.36806 -31.29668 -29.65124 -29.41405 -26.91553 -25.09977 -23.45304 -22.10169 -21.54206 -21.37999 -19.78278 -19.08168 -17.47366 -16.96239 -16.41265 -15.91701 -15.77679 -15.33841 -14.50381 -14.44414 -14.37698 -14.22382 -13.46849 -13.19408 -13.05114 -13.02791 -12.85667 -12.50616 -12.35784 -12.28307 -12.24210 -12.15385 -11.89881 -11.84666 -11.72575 -11.37516 -11.34017 -11.19745 -10.89344 -10.72929 -10.61298 -10.23652 -9.96371 -9.75001 -9.42338 -9.28596 -8.94735 -8.67290 -8.50092 -8.45104 -6.12786 -4.03779 0.53241 0.81517 1.18104 3.11860 3.23484 3.32688 3.33215 3.41785 3.90831 4.34818 4.42663 4.60981 4.65543 4.80729 4.95249 5.08613 5.13416 5.26370 5.37143 5.39213 5.46058 5.51722 5.56438 5.77267 5.80467 5.82156 5.91004 6.01302 6.03645 6.05019 6.21434 6.31019 6.46367 6.56017 6.71873 6.76304 6.77174 6.98890 7.01365 7.12733 7.28244 7.38496 7.62593 7.74123 7.82966 8.35800 8.94437 9.51452 10.96697 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.004632 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.257593 B = 6043.745361 C = 6719.294523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.114 4.114 3 C -0.064 4.064 4 C -0.141 4.141 5 C 0.017 3.983 6 C -0.145 4.145 7 C -0.670 4.670 8 S 2.692 3.308 9 O -0.969 6.969 10 O -0.960 6.960 11 N -1.111 6.111 12 C 0.164 3.836 13 H 0.077 0.923 14 C -0.115 4.115 15 C 0.010 3.990 16 C -0.490 4.490 17 C 0.077 3.923 18 N -0.888 5.888 19 Si 0.887 3.113 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.268 1.268 23 C -0.014 4.014 24 C -0.116 4.116 25 C -0.017 4.017 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.414 0.586 35 H 0.056 0.944 36 H 0.040 0.960 37 H 0.060 0.940 38 H 0.007 0.993 39 H 0.264 0.736 40 H 0.018 0.982 41 H 0.032 0.968 42 H 0.059 0.941 43 H 0.036 0.964 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.334 10.535 -14.337 17.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.115 4.115 3 C -0.082 4.082 4 C -0.159 4.159 5 C 0.016 3.984 6 C -0.202 4.202 7 C -0.756 4.756 8 S 2.781 3.219 9 O -0.959 6.959 10 O -0.950 6.950 11 N -0.871 5.871 12 C 0.059 3.941 13 H 0.095 0.905 14 C -0.155 4.155 15 C -0.028 4.028 16 C -0.509 4.509 17 C -0.126 4.126 18 N -0.525 5.525 19 Si 0.715 3.285 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.193 1.193 23 C -0.053 4.053 24 C -0.156 4.156 25 C -0.037 4.037 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.249 0.751 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.025 0.975 39 H 0.074 0.926 40 H 0.037 0.963 41 H 0.051 0.949 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.494 9.818 -14.845 17.972 hybrid contribution 0.369 1.603 0.991 1.921 sum -2.125 11.421 -13.854 18.080 Atomic orbital electron populations 1.20807 0.90536 1.02914 1.02871 1.20005 0.96540 0.93056 1.01893 1.21288 0.94272 0.97708 0.94955 1.21116 0.94326 0.97598 1.02878 1.19500 0.95775 0.91867 0.91261 1.21267 0.90406 1.04187 1.04294 1.30837 1.06217 1.19971 1.18600 1.01911 0.73526 0.73809 0.72624 1.93567 1.58910 1.87305 1.56116 1.93575 1.61740 1.53383 1.86293 1.55727 1.18334 1.90649 1.22437 1.20856 0.94016 0.97892 0.81355 0.90465 1.21987 1.01568 0.93663 0.98233 1.19382 0.93721 0.98367 0.91377 1.20041 1.46526 0.90251 0.94063 1.24840 0.94755 0.95902 0.97118 1.69834 1.47358 1.22947 1.12375 0.86685 0.78720 0.83924 0.79139 1.20446 1.21646 1.19277 1.19814 0.95120 0.97188 0.93134 1.22054 1.01317 0.94749 0.97485 1.20870 0.91886 0.99006 0.91898 0.90691 0.91506 0.91182 0.85476 0.85265 0.88762 0.90145 0.90799 0.75135 0.92564 0.94143 0.92114 0.97498 0.92566 0.96347 0.94918 0.92262 0.94554 0.83976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 36.00 0.36 -0.66 16 2 C -0.11 -1.34 5.88 -104.62 -0.62 -1.95 16 3 C -0.06 -0.68 9.70 -39.58 -0.38 -1.07 16 4 C -0.14 -1.57 9.68 -39.59 -0.38 -1.95 16 5 C 0.02 0.22 5.87 -104.62 -0.61 -0.39 16 6 C -0.14 -1.62 8.60 36.01 0.31 -1.31 16 7 C -0.67 -9.65 5.86 -39.58 -0.23 -9.88 16 8 S 2.69 42.16 4.80 -107.50 -0.52 41.64 16 9 O -0.97 -16.05 16.43 -57.17 -0.94 -16.99 16 10 O -0.96 -17.66 16.61 -57.17 -0.95 -18.61 16 11 N -1.11 -16.87 4.20 -4.93 -0.02 -16.89 16 12 C 0.16 2.99 2.66 -67.97 -0.18 2.81 16 13 H 0.08 1.44 7.71 -51.93 -0.40 1.04 16 14 C -0.11 -2.37 5.54 -26.63 -0.15 -2.51 16 15 C 0.01 0.24 5.97 -27.49 -0.16 0.07 16 16 C -0.49 -12.42 5.50 -98.92 -0.54 -12.97 16 17 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 18 N -0.89 -24.98 12.73 55.43 0.71 -24.27 16 19 Si 0.89 20.52 27.28 -169.99 -4.64 15.88 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -5.99 6.45 56.52 0.36 -5.63 16 23 C -0.01 -0.32 5.62 -27.26 -0.15 -0.47 16 24 C -0.12 -2.17 5.55 -26.41 -0.15 -2.32 16 25 C -0.02 -0.24 9.20 -39.59 -0.36 -0.60 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 29 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 31 H 0.09 1.02 8.00 -51.93 -0.42 0.60 16 32 H 0.08 0.72 8.05 -51.93 -0.42 0.30 16 33 H 0.07 0.84 5.49 -51.93 -0.29 0.56 16 34 H 0.41 5.33 8.63 -34.47 -0.30 5.04 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 1.62 7.07 -51.93 -0.37 1.25 16 38 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.03 0.72 4.77 -51.93 -0.25 0.47 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.14 1.88 7.33 -52.48 -0.38 1.50 16 LS Contribution 358.48 15.07 5.40 5.40 Total: -1.00 -31.28 358.48 -10.95 -42.23 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.63 Total: 2.90 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: -3.36 Total: -31.28 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.68 Total: -41.16 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -1.89 Total: -35.60 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.64 Total: 15.88 kcal Atomic # 16 Polarization: 42.16 SS G_CDS: -0.52 Total: 41.64 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.28 -10.95 -42.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254814514.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.200 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds