Wall clock time and date at job start Tue Mar 31 2020 14:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38261 * 119.99932 * 2 1 4 4 C 1.38208 * 120.00168 * 179.97438 * 3 2 1 5 5 C 1.38257 * 119.99834 * 359.75079 * 4 3 2 6 6 C 1.50704 * 120.00215 * 180.27154 * 5 4 3 7 7 C 1.38221 * 120.00040 * 0.50368 * 5 4 3 8 8 S 1.76199 * 119.99923 * 179.76668 * 7 5 4 9 9 O 1.42095 * 106.40309 * 311.82572 * 8 7 5 10 10 O 1.42105 * 106.39907 * 178.91021 * 8 7 5 11 11 N 1.65600 * 107.21973 * 65.36815 * 8 7 5 12 12 C 1.46505 * 119.99754 * 63.64629 * 11 8 7 13 13 H 1.08999 * 109.41325 * 359.49943 * 12 11 8 14 14 C 1.52959 * 109.41081 * 119.35924 * 12 11 8 15 15 C 1.53228 * 109.40181 * 183.70490 * 14 12 11 16 16 C 1.51267 * 108.53840 * 305.36730 * 15 14 12 17 17 C 1.37874 * 120.85231 * 231.33094 * 16 15 14 18 18 N 1.31511 * 120.00020 * 359.97438 * 17 16 15 19 19 Si 1.86802 * 119.99803 * 179.97438 * 17 16 15 20 20 H 1.48504 * 109.47254 * 269.99410 * 19 17 16 21 21 H 1.48504 * 109.46941 * 149.99915 * 19 17 16 22 22 H 1.48494 * 109.47099 * 29.99791 * 19 17 16 23 23 C 1.51273 * 118.29640 * 51.59808 * 16 15 14 24 24 C 1.52957 * 109.41273 * 239.70777 * 12 11 8 25 25 C 1.38214 * 120.00256 * 179.97438 * 2 1 3 26 26 H 1.09007 * 109.47737 * 270.02199 * 1 2 3 27 27 H 1.08999 * 109.47541 * 30.02417 * 1 2 3 28 28 H 1.09002 * 109.47037 * 150.02234 * 1 2 3 29 29 H 1.08000 * 120.00002 * 359.97438 * 3 2 1 30 30 H 1.07998 * 120.00186 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.46922 * 264.63471 * 6 5 4 32 32 H 1.08993 * 109.46845 * 24.63178 * 6 5 4 33 33 H 1.09000 * 109.47290 * 144.63669 * 6 5 4 34 34 H 0.96997 * 119.99790 * 243.64774 * 11 8 7 35 35 H 1.08993 * 109.48672 * 63.72078 * 14 12 11 36 36 H 1.09003 * 109.49315 * 303.68874 * 14 12 11 37 37 H 1.09000 * 109.62215 * 185.65537 * 15 14 12 38 38 H 1.08997 * 109.78557 * 65.17625 * 15 14 12 39 39 H 0.97001 * 119.99780 * 180.02562 * 18 17 16 40 40 H 1.09007 * 109.62448 * 68.11954 * 23 16 15 41 41 H 1.09003 * 109.62742 * 188.68715 * 23 16 15 42 42 H 1.09000 * 109.48430 * 296.27997 * 24 12 11 43 43 H 1.08999 * 109.48104 * 56.31663 * 24 12 11 44 44 H 1.08005 * 119.99496 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2716 0.0001 0.0063 6 6 5.7787 0.0001 0.0130 7 6 3.5806 -1.1969 0.0010 8 16 4.4617 -2.7228 0.0021 9 8 5.4541 -2.6139 -1.0091 10 8 3.4818 -3.7519 0.0217 11 7 5.2713 -2.8204 1.4434 12 6 4.5228 -2.8808 2.7013 13 1 3.4543 -2.8414 2.4894 14 6 4.8497 -4.1881 3.4250 15 6 3.9978 -4.2940 4.6943 16 6 4.2172 -3.0496 5.5259 17 6 4.5513 -3.1408 6.8604 18 7 4.6828 -4.3207 7.4262 19 14 4.8174 -1.5885 7.8648 20 1 6.2458 -1.1893 7.7903 21 1 4.4485 -1.8454 9.2802 22 1 3.9694 -0.4967 7.3226 23 6 4.0544 -1.7025 4.8573 24 6 4.9095 -1.6906 3.5807 25 6 2.1981 -1.1969 0.0005 26 1 -0.3635 0.0004 1.0277 27 1 -0.3634 0.8897 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6582 2.1327 -0.0004 30 1 4.1203 2.1327 0.0010 31 1 6.1465 -0.0982 -1.0083 32 1 6.1400 0.9351 0.4409 33 1 6.1393 -0.8366 0.6113 34 1 6.2410 -2.8375 1.4547 35 1 5.9058 -4.2006 3.6939 36 1 4.6315 -5.0312 2.7694 37 1 4.2983 -5.1730 5.2645 38 1 2.9444 -4.3741 4.4261 39 1 4.9175 -4.3849 8.3652 40 1 3.0066 -1.5451 4.6010 41 1 4.3912 -0.9156 5.5323 42 1 5.9644 -1.7621 3.8459 43 1 4.7337 -0.7634 3.0354 44 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254814514.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:13 Heat of formation + Delta-G solvation = -92.923245 kcal Electronic energy + Delta-G solvation = -26407.823780 eV Core-core repulsion = 22836.026852 eV Total energy + Delta-G solvation = -3571.796928 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.50693 -39.15584 -38.36727 -36.99769 -35.50999 -34.84783 -33.06286 -32.26486 -31.38960 -30.21717 -28.64559 -25.90581 -24.39045 -23.87476 -23.23989 -22.34539 -21.36484 -20.39130 -18.79586 -18.14987 -17.81952 -17.36526 -16.67447 -16.53259 -16.34658 -15.78103 -15.26055 -15.12565 -14.95120 -14.66714 -14.20727 -14.13513 -14.07764 -13.99268 -13.88411 -13.54618 -13.32945 -13.23685 -13.08406 -13.03287 -12.90630 -12.79626 -12.67811 -12.64055 -12.44803 -12.17695 -11.85732 -11.76374 -11.72407 -11.42451 -10.89831 -10.79803 -10.51421 -10.33343 -10.08652 -9.54775 -8.13320 -6.07871 -0.64999 -0.16699 0.29267 1.41195 1.44374 1.52856 1.93822 2.43647 2.43963 2.74185 3.14778 3.36729 3.71215 3.80407 3.88237 3.95352 4.18520 4.23232 4.25677 4.39025 4.46401 4.55683 4.58042 4.72085 4.76938 4.78891 4.82342 4.92470 4.96273 5.02827 5.09264 5.09756 5.13230 5.26890 5.28104 5.29206 5.35528 5.47418 5.47895 5.62558 5.67938 5.79550 5.84884 5.92109 6.14175 6.38287 6.98723 7.50075 8.97846 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.004632 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.257593 B = 6043.745361 C = 6719.294523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.120 4.120 3 C -0.061 4.061 4 C -0.141 4.141 5 C 0.005 3.995 6 C -0.151 4.151 7 C -0.684 4.684 8 S 2.703 3.297 9 O -0.980 6.980 10 O -0.995 6.995 11 N -1.103 6.103 12 C 0.175 3.825 13 H 0.072 0.928 14 C -0.110 4.110 15 C 0.005 3.995 16 C -0.498 4.498 17 C 0.021 3.979 18 N -0.933 5.933 19 Si 0.942 3.058 20 H -0.271 1.271 21 H -0.297 1.297 22 H -0.251 1.251 23 C -0.018 4.018 24 C -0.108 4.108 25 C -0.044 4.044 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.162 0.838 30 H 0.161 0.839 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.425 0.575 35 H 0.055 0.945 36 H 0.044 0.956 37 H 0.027 0.973 38 H -0.002 1.002 39 H 0.262 0.738 40 H 0.020 0.980 41 H 0.038 0.962 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.263 14.287 -15.482 21.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.121 4.121 3 C -0.078 4.078 4 C -0.159 4.159 5 C 0.003 3.997 6 C -0.208 4.208 7 C -0.773 4.773 8 S 2.797 3.203 9 O -0.970 6.970 10 O -0.985 6.985 11 N -0.864 5.864 12 C 0.069 3.931 13 H 0.090 0.910 14 C -0.149 4.149 15 C -0.033 4.033 16 C -0.517 4.517 17 C -0.177 4.177 18 N -0.573 5.573 19 Si 0.768 3.232 20 H -0.197 1.197 21 H -0.224 1.224 22 H -0.175 1.175 23 C -0.057 4.057 24 C -0.148 4.148 25 C -0.063 4.063 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.179 0.821 30 H 0.179 0.821 31 H 0.113 0.887 32 H 0.125 0.875 33 H 0.086 0.914 34 H 0.262 0.738 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.045 0.955 38 H 0.016 0.984 39 H 0.071 0.929 40 H 0.039 0.961 41 H 0.056 0.944 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.393 13.549 -16.015 21.113 hybrid contribution 0.264 0.442 1.260 1.361 sum -2.130 13.990 -14.754 20.444 Atomic orbital electron populations 1.20879 0.88822 1.04137 1.03359 1.20353 0.97960 0.92758 1.01071 1.21755 0.94468 0.98571 0.93046 1.21543 0.94780 0.98119 1.01467 1.19805 0.96690 0.91908 0.91293 1.21378 0.89455 1.05404 1.04517 1.30476 1.06396 1.19310 1.21129 1.01260 0.72922 0.73958 0.72207 1.93546 1.59443 1.87717 1.56307 1.93529 1.62613 1.55726 1.86662 1.55427 1.18908 1.90884 1.21154 1.20520 0.94132 0.96338 0.82141 0.90963 1.21845 1.00614 0.95636 0.96828 1.19344 0.93814 0.97267 0.92889 1.20636 1.44794 0.91992 0.94266 1.25640 0.95220 0.98432 0.98449 1.69989 1.49658 1.25128 1.12498 0.85789 0.79098 0.81006 0.77267 1.19686 1.22373 1.17522 1.19848 0.96002 0.95221 0.94594 1.21932 1.00734 0.96064 0.96064 1.21000 0.91978 0.99830 0.93496 0.90455 0.89185 0.91177 0.82071 0.82126 0.88721 0.87505 0.91378 0.73780 0.92616 0.93766 0.95466 0.98361 0.92915 0.96138 0.94394 0.91857 0.91565 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 10.01 71.23 0.71 -1.07 16 2 C -0.12 -2.54 5.88 -19.87 -0.12 -2.65 16 3 C -0.06 -1.05 9.70 22.27 0.22 -0.83 16 4 C -0.14 -2.55 9.68 22.27 0.22 -2.34 16 5 C 0.00 0.10 5.87 -19.86 -0.12 -0.01 16 6 C -0.15 -2.92 8.60 71.24 0.61 -2.31 16 7 C -0.68 -18.76 5.86 22.27 0.13 -18.63 16 8 S 2.70 83.43 4.80 -56.49 -0.27 83.16 16 9 O -0.98 -31.80 16.43 -128.00 -2.10 -33.91 16 10 O -1.00 -37.27 16.61 -128.00 -2.13 -39.39 16 11 N -1.10 -32.24 4.20 -169.50 -0.71 -32.95 16 12 C 0.18 6.21 2.66 44.96 0.12 6.33 16 13 H 0.07 2.67 7.71 -2.39 -0.02 2.65 16 14 C -0.11 -4.55 5.54 30.66 0.17 -4.38 16 15 C 0.01 0.26 5.97 30.10 0.18 0.44 16 16 C -0.50 -25.34 5.50 -16.17 -0.09 -25.43 16 17 C 0.02 1.10 5.46 84.65 0.46 1.57 16 18 N -0.93 -54.21 12.73 21.45 0.27 -53.94 16 19 Si 0.94 41.75 27.28 68.60 1.87 43.62 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.30 -13.37 7.11 99.48 0.71 -12.67 16 22 H -0.25 -10.34 6.45 99.48 0.64 -9.70 16 23 C -0.02 -0.78 5.62 30.25 0.17 -0.61 16 24 C -0.11 -3.79 5.55 30.80 0.17 -3.62 16 25 C -0.04 -1.16 9.20 22.27 0.20 -0.95 16 26 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.09 0.96 8.09 -2.39 -0.02 0.94 16 28 H 0.07 1.06 8.09 -2.39 -0.02 1.04 16 29 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 30 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 31 H 0.09 1.82 8.00 -2.39 -0.02 1.80 16 32 H 0.11 1.46 8.05 -2.39 -0.02 1.44 16 33 H 0.07 1.38 5.49 -2.39 -0.01 1.36 16 34 H 0.43 10.33 8.63 -96.75 -0.83 9.50 16 35 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.03 1.51 7.07 -2.39 -0.02 1.50 16 38 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 40 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.04 1.56 4.77 -2.39 -0.01 1.55 16 42 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.13 3.62 7.33 -2.91 -0.02 3.60 16 Total: -1.00 -68.75 358.48 0.08 -68.67 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.11 Total: 19.24 kcal Atomic # 6 Polarization: -57.54 SS G_CDS: 3.04 Total: -54.50 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -0.44 Total: -86.89 kcal Atomic # 8 Polarization: -69.07 SS G_CDS: -4.23 Total: -73.30 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.87 Total: 43.62 kcal Atomic # 16 Polarization: 83.43 SS G_CDS: -0.27 Total: 83.16 kcal Total: -68.75 0.08 -68.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254814514.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.258 kcal (2) G-P(sol) polarization free energy of solvation -68.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds