Wall clock time and date at job start Tue Mar 31 2020 14:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38262 * 119.99967 * 2 1 4 4 C 1.38216 * 119.99749 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.00100 * 359.81593 * 4 3 2 6 6 C 1.50700 * 119.99778 * 180.22988 * 5 4 3 7 7 C 1.38213 * 119.99760 * 0.42243 * 5 4 3 8 8 S 1.76204 * 119.99692 * 179.80819 * 7 5 4 9 9 O 1.42097 * 106.40152 * 311.01551 * 8 7 5 10 10 O 1.42099 * 106.40147 * 178.09216 * 8 7 5 11 11 N 1.65606 * 107.21680 * 64.55295 * 8 7 5 12 12 C 1.46492 * 120.00087 * 64.61109 * 11 8 7 13 13 H 1.09002 * 109.41728 * 335.52155 * 12 11 8 14 14 C 1.52967 * 109.41406 * 95.30362 * 12 11 8 15 15 C 1.53232 * 109.40340 * 183.70313 * 14 12 11 16 16 C 1.51264 * 108.53848 * 305.37664 * 15 14 12 17 17 C 1.37881 * 120.84749 * 231.37154 * 16 15 14 18 18 N 1.31517 * 119.99938 * 179.97438 * 17 16 15 19 19 Si 1.86799 * 120.00333 * 359.97438 * 17 16 15 20 20 H 1.48497 * 109.47281 * 59.99717 * 19 17 16 21 21 H 1.48497 * 109.47210 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47052 * 300.00217 * 19 17 16 23 23 C 1.51267 * 118.30162 * 51.34760 * 16 15 14 24 24 C 1.52956 * 109.41573 * 215.65804 * 12 11 8 25 25 C 1.38216 * 120.00027 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.46629 * 270.01855 * 1 2 3 27 27 H 1.08997 * 109.46856 * 30.01777 * 1 2 3 28 28 H 1.09002 * 109.46896 * 150.02074 * 1 2 3 29 29 H 1.07995 * 119.99607 * 0.02562 * 3 2 1 30 30 H 1.08000 * 119.99521 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.46902 * 264.58714 * 6 5 4 32 32 H 1.08991 * 109.47208 * 24.58869 * 6 5 4 33 33 H 1.09001 * 109.47107 * 144.59027 * 6 5 4 34 34 H 0.96999 * 119.99357 * 244.88631 * 11 8 7 35 35 H 1.08994 * 109.48587 * 303.68738 * 14 12 11 36 36 H 1.08999 * 109.47780 * 63.72657 * 14 12 11 37 37 H 1.09001 * 109.62039 * 185.65913 * 15 14 12 38 38 H 1.08999 * 109.78268 * 65.18680 * 15 14 12 39 39 H 0.97000 * 120.00405 * 179.97438 * 18 17 16 40 40 H 1.09005 * 109.62352 * 188.94114 * 23 16 15 41 41 H 1.08990 * 109.62741 * 68.36654 * 23 16 15 42 42 H 1.09000 * 109.48364 * 296.27958 * 24 12 11 43 43 H 1.09005 * 109.48429 * 56.30337 * 24 12 11 44 44 H 1.07998 * 119.99787 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0049 6 6 5.7787 0.0000 0.0107 7 6 3.5806 -1.1969 -0.0001 8 16 4.4617 -2.7229 0.0004 9 8 5.4410 -2.6211 -1.0241 10 8 3.4822 -3.7517 0.0400 11 7 5.2898 -2.8103 1.4319 12 6 4.5575 -2.8831 2.6985 13 1 3.5674 -2.4457 2.5703 14 6 4.4144 -4.3467 3.1197 15 6 3.5694 -4.4290 4.3953 16 6 4.1943 -3.5366 5.4446 17 6 4.4696 -4.0162 6.7077 18 7 5.0136 -3.2258 7.6071 19 14 4.0698 -5.7886 7.1415 20 1 4.8197 -6.7001 6.2404 21 1 4.4590 -6.0534 8.5498 22 1 2.6121 -6.0212 6.9792 23 6 4.5101 -2.1048 5.0727 24 6 5.3211 -2.1067 3.7726 25 6 2.1981 -1.1970 0.0005 26 1 -0.3632 0.0003 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1327 0.0010 31 1 6.1460 -0.0984 -1.0108 32 1 6.1404 0.9350 0.4384 33 1 6.1398 -0.8367 0.6088 34 1 6.2598 -2.8093 1.4317 35 1 3.9261 -4.9081 2.3232 36 1 5.4014 -4.7684 3.3096 37 1 3.5485 -5.4578 4.7547 38 1 2.5535 -4.0933 4.1871 39 1 5.2070 -3.5631 8.4958 40 1 5.0938 -1.6403 5.8676 41 1 3.5826 -1.5519 4.9248 42 1 6.2867 -2.5814 3.9471 43 1 5.4756 -1.0806 3.4388 44 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254814518.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:17 Heat of formation + Delta-G solvation = -74.552798 kcal Electronic energy + Delta-G solvation = -26313.756896 eV Core-core repulsion = 22742.756570 eV Total energy + Delta-G solvation = -3571.000326 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.62783 -37.59303 -37.02019 -35.66765 -34.17422 -33.63901 -31.36259 -31.29368 -29.65753 -29.43956 -26.88417 -25.10334 -23.44813 -22.12851 -21.51975 -21.43566 -19.67330 -19.08141 -17.45304 -16.95771 -16.41476 -15.91035 -15.76826 -15.36755 -14.50912 -14.44421 -14.37943 -14.20025 -13.47974 -13.23249 -13.06336 -12.91542 -12.84862 -12.50391 -12.39737 -12.29870 -12.17518 -12.15294 -11.89344 -11.84399 -11.72172 -11.37776 -11.34274 -11.11458 -10.88060 -10.67806 -10.54195 -10.24364 -10.05822 -9.83497 -9.42330 -9.21393 -8.95861 -8.67946 -8.51702 -8.46980 -6.12670 -4.03434 0.53372 0.81258 1.17705 3.12334 3.29343 3.35794 3.37860 3.41697 3.90533 4.37764 4.42822 4.60821 4.65499 4.80697 4.95032 5.08369 5.14039 5.26524 5.37548 5.39315 5.45808 5.51547 5.56180 5.76879 5.79294 5.83001 5.92059 6.01997 6.04115 6.06649 6.21201 6.30704 6.48956 6.58858 6.71457 6.76027 6.86230 6.95906 7.02867 7.09928 7.30910 7.41703 7.62670 7.69328 7.79392 8.35003 8.93574 9.52428 10.96868 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.004238 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.405921 B = 6605.831377 C = 6954.883002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.114 4.114 3 C -0.064 4.064 4 C -0.140 4.140 5 C 0.016 3.984 6 C -0.146 4.146 7 C -0.671 4.671 8 S 2.691 3.309 9 O -0.969 6.969 10 O -0.958 6.958 11 N -1.112 6.112 12 C 0.166 3.834 13 H 0.072 0.928 14 C -0.124 4.124 15 C -0.010 4.010 16 C -0.491 4.491 17 C 0.077 3.923 18 N -0.890 5.890 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.293 1.293 22 H -0.274 1.274 23 C 0.012 3.988 24 C -0.111 4.111 25 C -0.018 4.018 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.414 0.586 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.027 0.973 38 H 0.020 0.980 39 H 0.265 0.735 40 H 0.061 0.939 41 H 0.005 0.995 42 H 0.057 0.943 43 H 0.036 0.964 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.961 8.520 -14.775 17.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.115 4.115 3 C -0.082 4.082 4 C -0.159 4.159 5 C 0.015 3.985 6 C -0.202 4.202 7 C -0.757 4.757 8 S 2.781 3.219 9 O -0.959 6.959 10 O -0.948 6.948 11 N -0.872 5.872 12 C 0.060 3.940 13 H 0.090 0.910 14 C -0.164 4.164 15 C -0.049 4.049 16 C -0.510 4.510 17 C -0.126 4.126 18 N -0.528 5.528 19 Si 0.719 3.281 20 H -0.199 1.199 21 H -0.219 1.219 22 H -0.200 1.200 23 C -0.026 4.026 24 C -0.151 4.151 25 C -0.037 4.037 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.249 0.751 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.039 0.961 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.023 0.977 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.100 7.915 -15.255 17.464 hybrid contribution 0.006 -0.181 0.669 0.694 sum -3.095 7.734 -14.586 16.797 Atomic orbital electron populations 1.20807 0.90522 1.02919 1.02876 1.20016 0.96556 0.93065 1.01902 1.21298 0.94275 0.97723 0.94929 1.21128 0.94333 0.97623 1.02821 1.19509 0.95799 0.91887 0.91285 1.21273 0.90395 1.04270 1.04295 1.30850 1.06236 1.20013 1.18633 1.01936 0.73525 0.73822 0.72616 1.93568 1.59703 1.87335 1.55327 1.93571 1.61700 1.53268 1.86273 1.55756 1.18355 1.90682 1.22387 1.20835 0.94019 0.97816 0.81282 0.90979 1.22073 1.01213 0.94337 0.98742 1.19617 0.95472 0.96530 0.93253 1.20037 1.39777 0.95921 0.95238 1.24830 0.94403 0.97508 0.95814 1.69817 1.42255 1.35927 1.04757 0.86661 0.79219 0.85315 0.76917 1.19904 1.21910 1.19977 1.19361 0.94771 0.96171 0.92323 1.21946 0.99926 0.96423 0.96814 1.20876 0.91884 0.99019 0.91920 0.90685 0.91486 0.91191 0.85428 0.85204 0.88760 0.90052 0.90803 0.75135 0.93265 0.92379 0.95442 0.96136 0.92519 0.92091 0.97704 0.92382 0.94539 0.83947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 36.01 0.36 -0.66 16 2 C -0.11 -1.34 5.88 -104.62 -0.62 -1.96 16 3 C -0.06 -0.68 9.70 -39.58 -0.38 -1.07 16 4 C -0.14 -1.57 9.68 -39.58 -0.38 -1.95 16 5 C 0.02 0.21 5.87 -104.62 -0.61 -0.40 16 6 C -0.15 -1.63 8.61 36.01 0.31 -1.32 16 7 C -0.67 -9.67 5.71 -39.59 -0.23 -9.90 16 8 S 2.69 42.09 4.85 -107.50 -0.52 41.57 16 9 O -0.97 -16.10 16.51 -57.17 -0.94 -17.04 16 10 O -0.96 -17.45 16.22 -57.17 -0.93 -18.38 16 11 N -1.11 -16.87 4.26 -4.93 -0.02 -16.89 16 12 C 0.17 3.02 2.55 -67.97 -0.17 2.85 16 13 H 0.07 1.32 7.82 -51.93 -0.41 0.91 16 14 C -0.12 -2.52 5.54 -26.63 -0.15 -2.67 16 15 C -0.01 -0.24 5.59 -27.49 -0.15 -0.39 16 16 C -0.49 -12.53 5.51 -98.92 -0.55 -13.08 16 17 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 18 N -0.89 -24.99 12.73 55.43 0.71 -24.28 16 19 Si 0.89 21.05 26.80 -169.99 -4.56 16.49 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C 0.01 0.28 5.97 -27.49 -0.16 0.12 16 24 C -0.11 -2.17 5.46 -26.64 -0.15 -2.31 16 25 C -0.02 -0.24 9.20 -39.58 -0.36 -0.61 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 29 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 30 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 31 H 0.09 1.01 8.02 -51.93 -0.42 0.60 16 32 H 0.08 0.72 8.05 -51.93 -0.42 0.31 16 33 H 0.07 0.84 5.42 -51.93 -0.28 0.56 16 34 H 0.41 5.34 8.43 -34.47 -0.29 5.05 16 35 H 0.05 0.96 7.62 -51.93 -0.40 0.57 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.03 0.63 5.17 -51.93 -0.27 0.36 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.06 1.58 7.07 -51.93 -0.37 1.22 16 41 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.14 1.88 7.33 -52.49 -0.38 1.50 16 LS Contribution 357.86 15.07 5.39 5.39 Total: -1.00 -31.28 357.86 -10.80 -42.08 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.59 Total: 2.43 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: -3.34 Total: -31.38 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.68 Total: -41.17 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -1.87 Total: -35.42 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.56 Total: 16.49 kcal Atomic # 16 Polarization: 42.09 SS G_CDS: -0.52 Total: 41.57 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.28 -10.80 -42.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254814518.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.469 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds