Wall clock time and date at job start Tue Mar 31 2020 14:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38262 * 119.99967 * 2 1 4 4 C 1.38216 * 119.99749 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.00100 * 359.81593 * 4 3 2 6 6 C 1.50700 * 119.99778 * 180.22988 * 5 4 3 7 7 C 1.38213 * 119.99760 * 0.42243 * 5 4 3 8 8 S 1.76204 * 119.99692 * 179.80819 * 7 5 4 9 9 O 1.42097 * 106.40152 * 311.01551 * 8 7 5 10 10 O 1.42099 * 106.40147 * 178.09216 * 8 7 5 11 11 N 1.65606 * 107.21680 * 64.55295 * 8 7 5 12 12 C 1.46492 * 120.00087 * 64.61109 * 11 8 7 13 13 H 1.09002 * 109.41728 * 335.52155 * 12 11 8 14 14 C 1.52967 * 109.41406 * 95.30362 * 12 11 8 15 15 C 1.53232 * 109.40340 * 183.70313 * 14 12 11 16 16 C 1.51264 * 108.53848 * 305.37664 * 15 14 12 17 17 C 1.37881 * 120.84749 * 231.37154 * 16 15 14 18 18 N 1.31517 * 119.99938 * 179.97438 * 17 16 15 19 19 Si 1.86799 * 120.00333 * 359.97438 * 17 16 15 20 20 H 1.48497 * 109.47281 * 59.99717 * 19 17 16 21 21 H 1.48497 * 109.47210 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47052 * 300.00217 * 19 17 16 23 23 C 1.51267 * 118.30162 * 51.34760 * 16 15 14 24 24 C 1.52956 * 109.41573 * 215.65804 * 12 11 8 25 25 C 1.38216 * 120.00027 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.46629 * 270.01855 * 1 2 3 27 27 H 1.08997 * 109.46856 * 30.01777 * 1 2 3 28 28 H 1.09002 * 109.46896 * 150.02074 * 1 2 3 29 29 H 1.07995 * 119.99607 * 0.02562 * 3 2 1 30 30 H 1.08000 * 119.99521 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.46902 * 264.58714 * 6 5 4 32 32 H 1.08991 * 109.47208 * 24.58869 * 6 5 4 33 33 H 1.09001 * 109.47107 * 144.59027 * 6 5 4 34 34 H 0.96999 * 119.99357 * 244.88631 * 11 8 7 35 35 H 1.08994 * 109.48587 * 303.68738 * 14 12 11 36 36 H 1.08999 * 109.47780 * 63.72657 * 14 12 11 37 37 H 1.09001 * 109.62039 * 185.65913 * 15 14 12 38 38 H 1.08999 * 109.78268 * 65.18680 * 15 14 12 39 39 H 0.97000 * 120.00405 * 179.97438 * 18 17 16 40 40 H 1.09005 * 109.62352 * 188.94114 * 23 16 15 41 41 H 1.08990 * 109.62741 * 68.36654 * 23 16 15 42 42 H 1.09000 * 109.48364 * 296.27958 * 24 12 11 43 43 H 1.09005 * 109.48429 * 56.30337 * 24 12 11 44 44 H 1.07998 * 119.99787 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0049 6 6 5.7787 0.0000 0.0107 7 6 3.5806 -1.1969 -0.0001 8 16 4.4617 -2.7229 0.0004 9 8 5.4410 -2.6211 -1.0241 10 8 3.4822 -3.7517 0.0400 11 7 5.2898 -2.8103 1.4319 12 6 4.5575 -2.8831 2.6985 13 1 3.5674 -2.4457 2.5703 14 6 4.4144 -4.3467 3.1197 15 6 3.5694 -4.4290 4.3953 16 6 4.1943 -3.5366 5.4446 17 6 4.4696 -4.0162 6.7077 18 7 5.0136 -3.2258 7.6071 19 14 4.0698 -5.7886 7.1415 20 1 4.8197 -6.7001 6.2404 21 1 4.4590 -6.0534 8.5498 22 1 2.6121 -6.0212 6.9792 23 6 4.5101 -2.1048 5.0727 24 6 5.3211 -2.1067 3.7726 25 6 2.1981 -1.1970 0.0005 26 1 -0.3632 0.0003 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1327 0.0010 31 1 6.1460 -0.0984 -1.0108 32 1 6.1404 0.9350 0.4384 33 1 6.1398 -0.8367 0.6088 34 1 6.2598 -2.8093 1.4317 35 1 3.9261 -4.9081 2.3232 36 1 5.4014 -4.7684 3.3096 37 1 3.5485 -5.4578 4.7547 38 1 2.5535 -4.0933 4.1871 39 1 5.2070 -3.5631 8.4958 40 1 5.0938 -1.6403 5.8676 41 1 3.5826 -1.5519 4.9248 42 1 6.2867 -2.5814 3.9471 43 1 5.4756 -1.0806 3.4388 44 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254814518.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:16 Heat of formation + Delta-G solvation = -93.933021 kcal Electronic energy + Delta-G solvation = -26314.597286 eV Core-core repulsion = 22742.756570 eV Total energy + Delta-G solvation = -3571.840715 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.51000 -39.18455 -38.34004 -36.98002 -35.51984 -34.85752 -33.06961 -32.27230 -31.40971 -30.23306 -28.62639 -25.91538 -24.37775 -23.91684 -23.25883 -22.36051 -21.29948 -20.36758 -18.77970 -18.13295 -17.80301 -17.40196 -16.67324 -16.54758 -16.39148 -15.77502 -15.26456 -15.15881 -14.93482 -14.61722 -14.27807 -14.13382 -14.06265 -13.99285 -13.88622 -13.56107 -13.32753 -13.22971 -13.07871 -13.06455 -12.81254 -12.79145 -12.67066 -12.65168 -12.36921 -12.18328 -11.98713 -11.82973 -11.70553 -11.54288 -10.89325 -10.73586 -10.52563 -10.33640 -10.13812 -9.55896 -8.15452 -6.08335 -0.64180 -0.17434 0.28168 1.40734 1.42767 1.49586 1.94303 2.42352 2.43445 2.73810 3.12802 3.37571 3.70356 3.79633 3.89715 3.94647 4.16566 4.19647 4.27039 4.39448 4.46814 4.54906 4.56425 4.70498 4.76100 4.78349 4.82045 4.91847 4.96933 5.01094 5.08650 5.11000 5.11955 5.25636 5.27104 5.29538 5.34397 5.46589 5.47476 5.60629 5.67458 5.80360 5.85833 5.91228 6.14081 6.37704 6.97576 7.49540 8.95021 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.004238 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.405921 B = 6605.831377 C = 6954.883002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.121 4.121 3 C -0.062 4.062 4 C -0.142 4.142 5 C 0.002 3.998 6 C -0.152 4.152 7 C -0.686 4.686 8 S 2.704 3.296 9 O -0.981 6.981 10 O -0.989 6.989 11 N -1.103 6.103 12 C 0.177 3.823 13 H 0.073 0.927 14 C -0.124 4.124 15 C -0.015 4.015 16 C -0.498 4.498 17 C 0.027 3.973 18 N -0.928 5.928 19 Si 0.936 3.064 20 H -0.267 1.267 21 H -0.294 1.294 22 H -0.270 1.270 23 C 0.008 3.992 24 C -0.100 4.100 25 C -0.044 4.044 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.162 0.838 30 H 0.161 0.839 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.425 0.575 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.026 0.974 38 H 0.023 0.977 39 H 0.263 0.737 40 H 0.032 0.968 41 H 0.002 0.998 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.371 9.969 -16.243 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.122 4.122 3 C -0.079 4.079 4 C -0.161 4.161 5 C 0.001 3.999 6 C -0.208 4.208 7 C -0.775 4.775 8 S 2.797 3.203 9 O -0.971 6.971 10 O -0.979 6.979 11 N -0.864 5.864 12 C 0.071 3.929 13 H 0.091 0.909 14 C -0.163 4.163 15 C -0.054 4.054 16 C -0.518 4.518 17 C -0.171 4.171 18 N -0.567 5.567 19 Si 0.763 3.237 20 H -0.192 1.192 21 H -0.221 1.221 22 H -0.195 1.195 23 C -0.030 4.030 24 C -0.140 4.140 25 C -0.063 4.063 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.180 0.820 30 H 0.178 0.822 31 H 0.114 0.886 32 H 0.124 0.876 33 H 0.086 0.914 34 H 0.262 0.738 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.044 0.956 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.021 0.979 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.486 9.323 -16.742 19.478 hybrid contribution 0.070 -0.508 1.059 1.177 sum -3.416 8.815 -15.684 18.312 Atomic orbital electron populations 1.20879 0.88728 1.04183 1.03376 1.20379 0.98032 0.92770 1.01051 1.21766 0.94442 0.98650 0.93085 1.21556 0.94847 0.98149 1.01512 1.19822 0.96727 0.92010 0.91385 1.21382 0.89481 1.05415 1.04539 1.30534 1.06484 1.19448 1.21057 1.01285 0.72933 0.73924 0.72176 1.93547 1.60264 1.87745 1.55565 1.93527 1.62428 1.55380 1.86596 1.55465 1.18963 1.90864 1.21114 1.20502 0.94258 0.96182 0.81983 0.90909 1.22026 1.00663 0.96016 0.97620 1.19659 0.95916 0.95924 0.93857 1.20620 1.38485 0.97073 0.95596 1.25495 0.94988 1.00516 0.96122 1.69936 1.44380 1.37366 1.05061 0.85913 0.79222 0.81969 0.76598 1.19223 1.22068 1.19475 1.19323 0.94845 0.95149 0.93693 1.21739 0.98904 0.98296 0.95021 1.21025 0.91950 0.99892 0.93434 0.90447 0.89200 0.91065 0.82048 0.82172 0.88634 0.87566 0.91376 0.73808 0.92568 0.92424 0.95556 0.95847 0.92823 0.94944 0.97931 0.92736 0.91887 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 10.01 71.24 0.71 -1.07 16 2 C -0.12 -2.59 5.88 -19.86 -0.12 -2.70 16 3 C -0.06 -1.10 9.70 22.27 0.22 -0.88 16 4 C -0.14 -2.69 9.68 22.27 0.22 -2.47 16 5 C 0.00 0.05 5.87 -19.87 -0.12 -0.07 16 6 C -0.15 -3.03 8.61 71.24 0.61 -2.42 16 7 C -0.69 -19.01 5.71 22.27 0.13 -18.88 16 8 S 2.70 82.78 4.85 -56.49 -0.27 82.51 16 9 O -0.98 -31.84 16.51 -128.00 -2.11 -33.95 16 10 O -0.99 -35.98 16.22 -128.00 -2.08 -38.06 16 11 N -1.10 -32.10 4.26 -169.51 -0.72 -32.83 16 12 C 0.18 6.25 2.55 44.97 0.11 6.37 16 13 H 0.07 2.59 7.82 -2.39 -0.02 2.57 16 14 C -0.12 -4.91 5.54 30.66 0.17 -4.74 16 15 C -0.02 -0.69 5.59 30.10 0.17 -0.52 16 16 C -0.50 -25.51 5.51 -16.17 -0.09 -25.60 16 17 C 0.03 1.48 5.46 84.66 0.46 1.94 16 18 N -0.93 -53.19 12.73 21.45 0.27 -52.92 16 19 Si 0.94 43.28 26.80 68.60 1.84 45.12 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 23 C 0.01 0.39 5.97 30.11 0.18 0.57 16 24 C -0.10 -3.78 5.46 30.66 0.17 -3.61 16 25 C -0.04 -1.16 9.20 22.27 0.20 -0.96 16 26 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.09 0.96 8.09 -2.39 -0.02 0.94 16 28 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 29 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 30 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 31 H 0.10 1.87 8.02 -2.39 -0.02 1.85 16 32 H 0.11 1.54 8.05 -2.39 -0.02 1.52 16 33 H 0.07 1.41 5.42 -2.39 -0.01 1.40 16 34 H 0.43 10.32 8.43 -96.75 -0.82 9.51 16 35 H 0.06 2.15 7.62 -2.39 -0.02 2.13 16 36 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.03 1.18 5.17 -2.39 -0.01 1.16 16 38 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.03 1.71 7.07 -2.38 -0.02 1.69 16 41 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 42 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 44 H 0.14 3.64 7.33 -2.91 -0.02 3.62 16 Total: -1.00 -67.47 357.86 0.15 -67.32 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.19 Total: 17.86 kcal Atomic # 6 Polarization: -58.08 SS G_CDS: 3.03 Total: -55.05 kcal Atomic # 7 Polarization: -85.30 SS G_CDS: -0.45 Total: -85.74 kcal Atomic # 8 Polarization: -67.82 SS G_CDS: -4.19 Total: -72.01 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.84 Total: 45.12 kcal Atomic # 16 Polarization: 82.78 SS G_CDS: -0.27 Total: 82.51 kcal Total: -67.47 0.15 -67.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254814518.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.612 kcal (2) G-P(sol) polarization free energy of solvation -67.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds