Wall clock time and date at job start Tue Mar 31 2020 14:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38261 * 120.00233 * 2 1 4 4 C 1.38213 * 120.00264 * 179.76760 * 3 2 1 5 5 C 1.38255 * 119.99543 * 0.48427 * 4 3 2 6 6 C 1.50704 * 119.99742 * 179.76423 * 5 4 3 7 7 C 1.38212 * 120.00412 * 359.49902 * 5 4 3 8 8 S 1.76205 * 120.00286 * 180.27524 * 7 5 4 9 9 O 1.42098 * 106.40022 * 50.34883 * 8 7 5 10 10 O 1.42101 * 106.40054 * 183.27254 * 8 7 5 11 11 N 1.65598 * 107.21565 * 296.80886 * 8 7 5 12 12 C 1.46498 * 120.00226 * 293.60644 * 11 8 7 13 13 C 1.50704 * 110.01572 * 305.91848 * 12 11 8 14 14 H 1.07998 * 120.00113 * 122.98256 * 13 12 11 15 15 C 1.37875 * 119.99891 * 302.98843 * 13 12 11 16 16 N 1.31516 * 120.00212 * 5.16070 * 15 13 12 17 17 Si 1.86804 * 119.99761 * 185.15860 * 15 13 12 18 18 H 1.48499 * 109.46710 * 90.00060 * 17 15 13 19 19 H 1.48505 * 109.47121 * 209.99843 * 17 15 13 20 20 H 1.48493 * 109.47503 * 330.00117 * 17 15 13 21 21 C 1.54271 * 110.03321 * 184.53354 * 12 11 8 22 22 C 1.54958 * 104.15666 * 217.13152 * 21 12 11 23 23 C 1.54890 * 102.78231 * 37.88888 * 22 21 12 24 24 C 1.53869 * 110.03553 * 67.31169 * 12 11 8 25 25 C 1.38218 * 119.99994 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47323 * 270.02033 * 1 2 3 27 27 H 1.09007 * 109.47241 * 30.02222 * 1 2 3 28 28 H 1.09000 * 109.46918 * 150.01818 * 1 2 3 29 29 H 1.07995 * 119.99625 * 0.02562 * 3 2 1 30 30 H 1.07996 * 120.00358 * 180.25471 * 4 3 2 31 31 H 1.09000 * 109.47356 * 263.64998 * 6 5 4 32 32 H 1.09005 * 109.46862 * 143.64685 * 6 5 4 33 33 H 1.08993 * 109.47101 * 23.65301 * 6 5 4 34 34 H 0.97003 * 119.99930 * 113.60399 * 11 8 7 35 35 H 0.97001 * 120.00034 * 185.00686 * 16 15 13 36 36 H 1.09001 * 110.48115 * 335.77823 * 21 12 11 37 37 H 1.08994 * 110.48556 * 98.41918 * 21 12 11 38 38 H 1.09001 * 110.72522 * 279.57176 * 22 21 12 39 39 H 1.09005 * 110.92134 * 156.29120 * 22 21 12 40 40 H 1.08995 * 110.48988 * 203.40664 * 23 22 21 41 41 H 1.08998 * 110.48966 * 80.75696 * 23 22 21 42 42 H 1.08996 * 110.03187 * 238.57186 * 24 12 11 43 43 H 1.08996 * 110.03366 * 0.02562 * 24 12 11 44 44 H 1.07999 * 119.99604 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0049 5 6 4.2717 0.0000 -0.0004 6 6 5.7787 0.0000 -0.0005 7 6 3.5806 -1.1970 -0.0001 8 16 4.4616 -2.7230 0.0006 9 8 5.4154 -2.6351 1.0502 10 8 3.4836 -3.7509 -0.0770 11 7 5.3247 -2.7912 -1.4111 12 6 4.6240 -2.8862 -2.6942 13 6 3.6735 -4.0555 -2.6775 14 1 2.6227 -3.9001 -2.8724 15 6 4.1453 -5.3238 -2.4131 16 7 5.4042 -5.5001 -2.0760 17 14 2.9963 -6.7917 -2.5339 18 1 3.0316 -7.3355 -3.9153 19 1 3.4317 -7.8411 -1.5775 20 1 1.6124 -6.3656 -2.2049 21 6 5.6423 -3.0495 -3.8415 22 6 5.0373 -2.2246 -5.0054 23 6 4.4294 -0.9999 -4.2777 24 6 3.8529 -1.5839 -2.9714 25 6 2.1981 -1.1970 0.0005 26 1 -0.3634 0.0004 1.0277 27 1 -0.3634 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5136 29 1 1.6583 2.1326 0.0004 30 1 4.1205 2.1326 0.0090 31 1 6.1420 -0.1092 -1.0223 32 1 6.1420 -0.8304 0.6051 33 1 6.1420 0.9395 0.4159 34 1 6.2942 -2.7683 -1.3884 35 1 5.7544 -6.3973 -1.9609 36 1 6.6120 -2.6451 -3.5513 37 1 5.7342 -4.0983 -4.1236 38 1 4.2617 -2.7930 -5.5187 39 1 5.8125 -1.9124 -5.7053 40 1 3.6369 -0.5537 -4.8784 41 1 5.2029 -0.2641 -4.0578 42 1 2.7912 -1.7977 -3.0946 43 1 4.0002 -0.8810 -2.1515 44 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254853297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:48 Heat of formation + Delta-G solvation = -75.394216 kcal Electronic energy + Delta-G solvation = -27698.203260 eV Core-core repulsion = 24127.166448 eV Total energy + Delta-G solvation = -3571.036812 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.50514 -39.31719 -37.90650 -36.43748 -34.85622 -34.55747 -33.23368 -32.14487 -30.14963 -29.20785 -28.64090 -25.85855 -25.70483 -24.21919 -22.18969 -21.50944 -20.82401 -19.76552 -18.54306 -17.91150 -17.68932 -17.04728 -16.62490 -16.49851 -16.26102 -15.78101 -15.34983 -15.14721 -15.04165 -14.45007 -14.22226 -13.95135 -13.82974 -13.65988 -13.42107 -13.33428 -13.18521 -12.89256 -12.84830 -12.65861 -12.59522 -12.55136 -12.29300 -12.26260 -12.09627 -12.00314 -11.63974 -11.52884 -11.43055 -11.28983 -11.08064 -11.02321 -10.32897 -10.12912 -9.61161 -9.43304 -7.99234 -6.06722 -0.18052 0.02165 0.38052 1.37629 1.44530 1.50815 2.44803 2.53573 2.71685 3.19832 3.38544 3.70786 3.88047 3.98273 4.07356 4.17360 4.22783 4.28279 4.32311 4.39798 4.60131 4.69614 4.74637 4.81883 4.86988 4.88526 4.96357 5.01409 5.06779 5.11290 5.14981 5.18635 5.26616 5.30378 5.34304 5.38750 5.45571 5.48296 5.54546 5.63262 5.74978 5.84143 6.02441 6.10503 6.48456 6.78441 7.00007 7.63495 9.03304 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013054 B = 0.006587 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.343842 B = 4249.740095 C = 4543.239173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.120 4.120 3 C -0.064 4.064 4 C -0.138 4.138 5 C -0.003 4.003 6 C -0.171 4.171 7 C -0.670 4.670 8 S 2.691 3.309 9 O -1.024 7.024 10 O -0.980 6.980 11 N -1.067 6.067 12 C 0.295 3.705 13 C -0.510 4.510 14 H 0.045 0.955 15 C 0.057 3.943 16 N -0.890 5.890 17 Si 0.917 3.083 18 H -0.270 1.270 19 H -0.296 1.296 20 H -0.280 1.280 21 C -0.093 4.093 22 C -0.115 4.115 23 C -0.108 4.108 24 C -0.145 4.145 25 C -0.041 4.041 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.060 0.940 29 H 0.165 0.835 30 H 0.163 0.837 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.400 0.600 35 H 0.255 0.745 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.069 0.931 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 16.905 -0.600 17.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.121 4.121 3 C -0.082 4.082 4 C -0.157 4.157 5 C -0.004 4.004 6 C -0.227 4.227 7 C -0.759 4.759 8 S 2.784 3.216 9 O -1.014 7.014 10 O -0.970 6.970 11 N -0.826 5.826 12 C 0.210 3.790 13 C -0.551 4.551 14 H 0.063 0.937 15 C -0.145 4.145 16 N -0.529 5.529 17 Si 0.745 3.255 18 H -0.196 1.196 19 H -0.223 1.223 20 H -0.205 1.205 21 C -0.133 4.133 22 C -0.153 4.153 23 C -0.146 4.146 24 C -0.184 4.184 25 C -0.061 4.061 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.079 0.921 29 H 0.182 0.818 30 H 0.180 0.820 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.126 0.874 34 H 0.234 0.766 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.186 16.129 0.197 16.442 hybrid contribution -0.390 -1.250 0.027 1.309 sum -3.576 14.880 0.224 15.305 Atomic orbital electron populations 1.20847 0.88893 1.03824 1.03304 1.20318 0.97828 0.92596 1.01351 1.21669 0.94272 0.98271 0.93970 1.21506 0.94800 0.97727 1.01626 1.19737 0.96456 0.91956 0.92252 1.21596 0.90214 1.06269 1.04670 1.30752 1.06587 1.20027 1.18492 1.01640 0.73230 0.74109 0.72587 1.93384 1.63026 1.88203 1.56821 1.93518 1.62657 1.54463 1.86360 1.55368 1.16671 1.89797 1.20726 1.18476 0.89449 0.90997 0.80122 1.21566 0.93903 0.92566 1.47027 0.93671 1.25206 0.95574 1.00398 0.93344 1.70040 1.14475 1.21583 1.46773 0.86203 0.80730 0.81142 0.77390 1.19567 1.22300 1.20505 1.22307 0.96681 0.99328 0.95021 1.22412 0.99692 0.96240 0.96946 1.22229 0.99895 0.97120 0.95336 1.22924 0.99200 0.97342 0.98960 1.20862 0.92028 0.99404 0.93796 0.90066 0.88981 0.92098 0.81756 0.81987 0.88697 0.90565 0.87356 0.76636 0.93616 0.93011 0.93472 0.92730 0.90594 0.91355 0.90799 0.93635 0.91223 0.86324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.24 10.01 71.24 0.71 -1.53 16 2 C -0.12 -3.21 5.88 -19.86 -0.12 -3.32 16 3 C -0.06 -1.38 9.70 22.27 0.22 -1.16 16 4 C -0.14 -3.18 9.68 22.27 0.22 -2.97 16 5 C 0.00 -0.08 4.57 -19.87 -0.09 -0.17 16 6 C -0.17 -4.70 9.19 71.24 0.65 -4.04 16 7 C -0.67 -25.13 3.59 22.27 0.08 -25.05 16 8 S 2.69 124.65 5.00 -56.49 -0.28 124.37 16 9 O -1.02 -50.05 15.52 -128.00 -1.99 -52.03 16 10 O -0.98 -53.43 13.91 -128.00 -1.78 -55.21 16 11 N -1.07 -46.81 4.24 -152.30 -0.65 -47.45 16 12 C 0.30 12.98 0.61 3.58 0.00 12.98 16 13 C -0.51 -26.83 5.96 25.60 0.15 -26.68 16 14 H 0.05 2.46 7.33 -2.91 -0.02 2.44 16 15 C 0.06 3.17 4.13 84.65 0.35 3.52 16 16 N -0.89 -49.66 11.62 21.45 0.25 -49.41 16 17 Si 0.92 46.10 29.54 68.60 2.03 48.13 16 18 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 20 H -0.28 -14.29 7.11 99.48 0.71 -13.58 16 21 C -0.09 -3.77 5.64 31.69 0.18 -3.59 16 22 C -0.11 -3.76 6.91 31.91 0.22 -3.54 16 23 C -0.11 -3.24 6.83 31.67 0.22 -3.03 16 24 C -0.15 -5.41 5.57 31.32 0.17 -5.24 16 25 C -0.04 -1.47 9.20 22.27 0.20 -1.27 16 26 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.09 1.34 8.09 -2.38 -0.02 1.32 16 28 H 0.06 1.33 8.09 -2.39 -0.02 1.31 16 29 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 30 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 31 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.08 2.55 5.20 -2.38 -0.01 2.54 16 33 H 0.11 2.16 8.04 -2.39 -0.02 2.14 16 34 H 0.40 16.60 8.37 -96.74 -0.81 15.79 16 35 H 0.25 13.98 8.32 -92.71 -0.77 13.21 16 36 H 0.05 1.93 7.73 -2.39 -0.02 1.91 16 37 H 0.05 2.21 6.84 -2.39 -0.02 2.19 16 38 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 40 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.04 1.82 7.37 -2.39 -0.02 1.80 16 43 H 0.07 2.42 4.26 -2.39 -0.01 2.41 16 44 H 0.12 4.61 7.34 -2.91 -0.02 4.59 16 Total: -1.00 -70.12 350.57 0.95 -69.17 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.20 Total: 27.54 kcal Atomic # 6 Polarization: -68.27 SS G_CDS: 3.17 Total: -65.10 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -0.40 Total: -96.86 kcal Atomic # 8 Polarization: -103.48 SS G_CDS: -3.77 Total: -107.24 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Atomic # 16 Polarization: 124.65 SS G_CDS: -0.28 Total: 124.37 kcal Total: -70.12 0.95 -69.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254853297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.225 kcal (2) G-P(sol) polarization free energy of solvation -70.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds