Wall clock time and date at job start Tue Mar 31 2020 14:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38258 * 119.99962 * 2 1 4 4 C 1.38210 * 120.00468 * 179.97438 * 3 2 1 5 5 C 1.38257 * 119.99824 * 0.02562 * 4 3 2 6 6 S 1.76195 * 120.00235 * 179.97438 * 5 4 3 7 7 O 1.42100 * 106.40313 * 131.31254 * 6 5 4 8 8 O 1.42100 * 106.40218 * 358.38943 * 6 5 4 9 9 N 1.65604 * 107.21741 * 244.84952 * 6 5 4 10 10 C 1.46498 * 120.00142 * 64.64718 * 9 6 5 11 11 H 1.08998 * 109.41065 * 335.48241 * 10 9 6 12 12 C 1.53005 * 109.33956 * 95.11369 * 10 9 6 13 13 C 1.53232 * 109.38017 * 183.47467 * 12 10 9 14 14 C 1.51265 * 108.69526 * 305.66413 * 13 12 10 15 15 C 1.37879 * 120.84781 * 231.22953 * 14 13 12 16 16 N 1.31513 * 119.99865 * 359.97438 * 15 14 13 17 17 Si 1.86798 * 120.00196 * 179.97438 * 15 14 13 18 18 H 1.48502 * 109.46955 * 59.99759 * 17 15 14 19 19 H 1.48500 * 109.47368 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47104 * 299.99949 * 17 15 14 21 21 C 1.51265 * 118.30242 * 51.24845 * 14 13 12 22 22 C 1.52955 * 109.41329 * 215.62534 * 10 9 6 23 23 C 1.38219 * 119.99916 * 0.25312 * 5 4 3 24 24 C 1.50698 * 120.00135 * 179.72828 * 23 5 4 25 25 C 1.38208 * 120.00350 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.46334 * 90.00654 * 1 2 3 27 27 H 1.08996 * 109.46854 * 209.99928 * 1 2 3 28 28 H 1.08994 * 109.47438 * 330.00423 * 1 2 3 29 29 H 1.08000 * 119.99847 * 359.97335 * 3 2 1 30 30 H 1.08001 * 120.00508 * 179.97438 * 4 3 2 31 31 H 0.97006 * 119.99800 * 244.64157 * 9 6 5 32 32 H 1.09000 * 109.33676 * 63.60049 * 12 10 9 33 33 H 1.08996 * 109.65244 * 303.54574 * 12 10 9 34 34 H 1.08997 * 109.62555 * 185.85018 * 13 12 10 35 35 H 1.09005 * 109.62263 * 65.47312 * 13 12 10 36 36 H 0.97006 * 120.00063 * 180.02562 * 16 15 14 37 37 H 1.09001 * 109.62478 * 68.36960 * 21 14 13 38 38 H 1.09006 * 109.62750 * 188.74246 * 21 14 13 39 39 H 1.09001 * 109.48636 * 56.38816 * 22 10 9 40 40 H 1.08999 * 109.49572 * 296.34963 * 22 10 9 41 41 H 1.08998 * 109.47114 * 84.38850 * 24 23 5 42 42 H 1.09005 * 109.46970 * 204.38962 * 24 23 5 43 43 H 1.09000 * 109.47177 * 324.38572 * 24 23 5 44 44 H 1.08007 * 119.99781 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 16 6.0337 0.0002 0.0005 7 8 6.4350 -0.8997 1.0244 8 8 6.4349 1.3628 -0.0378 9 7 6.5239 -0.6721 -1.4313 10 6 6.2218 0.0000 -2.6975 11 1 5.3478 0.6386 -2.5692 12 6 7.4179 0.8589 -3.1132 13 6 7.0707 1.6295 -4.3913 14 6 6.6112 0.6435 -5.4424 15 6 7.1656 0.6462 -6.7048 16 7 8.1061 1.5139 -7.0080 17 14 6.5808 -0.5827 -7.9844 18 1 5.1291 -0.3889 -8.2296 19 1 7.3285 -0.3730 -9.2501 20 1 6.8195 -1.9627 -7.4907 21 6 5.5277 -0.3453 -5.0731 22 6 5.9321 -1.0482 -3.7730 23 6 3.5807 -1.1969 -0.0053 24 6 4.3342 -2.5019 -0.0115 25 6 2.1981 -1.1969 0.0005 26 1 -0.3632 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 1.6582 2.1326 -0.0004 30 1 4.1204 2.1328 0.0001 31 1 7.0111 -1.5109 -1.4316 32 1 8.2774 0.2149 -3.2991 33 1 7.6571 1.5640 -2.3172 34 1 7.9523 2.1616 -4.7489 35 1 6.2723 2.3420 -4.1838 36 1 8.4959 1.5161 -7.8963 37 1 4.5852 0.1822 -4.9263 38 1 5.4154 -1.0802 -5.8704 39 1 5.1194 -1.6945 -3.4413 40 1 6.8256 -1.6478 -3.9467 41 1 4.6028 -2.7712 1.0100 42 1 3.7054 -3.2825 -0.4397 43 1 5.2395 -2.3960 -0.6093 44 1 1.6581 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259102952.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:50 Heat of formation + Delta-G solvation = -94.509438 kcal Electronic energy + Delta-G solvation = -26237.097788 eV Core-core repulsion = 22665.232078 eV Total energy + Delta-G solvation = -3571.865710 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.52048 -39.17314 -38.32314 -36.96897 -35.49228 -34.63473 -33.19996 -32.96062 -31.40656 -28.68580 -28.37932 -27.91188 -23.91835 -23.44787 -23.26669 -22.20664 -21.32911 -20.42602 -18.91248 -18.47660 -17.81947 -17.41751 -16.57084 -16.35787 -16.07295 -15.76084 -15.36635 -15.16531 -14.93477 -14.71646 -14.22974 -14.12445 -14.05727 -14.02347 -14.00553 -13.48072 -13.27569 -13.16234 -13.05583 -12.98275 -12.88281 -12.83664 -12.76013 -12.65557 -12.39763 -12.11142 -12.02300 -11.79181 -11.69795 -11.46624 -10.97443 -10.72234 -10.51633 -10.12860 -10.05838 -9.78947 -8.13346 -6.08252 -0.62954 -0.18906 0.30748 1.43226 1.43912 1.52291 1.95754 2.43328 2.43701 2.75369 3.14415 3.39869 3.66640 3.80856 3.83713 3.90986 4.22075 4.25640 4.26429 4.45865 4.46283 4.49186 4.63175 4.67287 4.71146 4.77786 4.81485 4.96199 4.99364 5.04475 5.08357 5.09495 5.15758 5.21358 5.25902 5.29690 5.31374 5.48604 5.49091 5.62417 5.67999 5.79082 5.85843 5.91328 6.15540 6.38018 6.98550 7.49666 8.98075 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014631 B = 0.004327 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.266686 B = 6468.859261 C = 7229.493574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.028 4.028 3 C -0.157 4.157 4 C -0.035 4.035 5 C -0.698 4.698 6 S 2.703 3.297 7 O -0.982 6.982 8 O -0.994 6.994 9 N -1.103 6.103 10 C 0.178 3.822 11 H 0.073 0.927 12 C -0.119 4.119 13 C 0.007 3.993 14 C -0.499 4.499 15 C 0.020 3.980 16 N -0.934 5.934 17 Si 0.946 3.054 18 H -0.266 1.266 19 H -0.299 1.299 20 H -0.259 1.259 21 C -0.014 4.014 22 C -0.105 4.105 23 C 0.016 3.984 24 C -0.152 4.152 25 C -0.151 4.151 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.152 0.848 30 H 0.136 0.864 31 H 0.425 0.575 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.024 0.976 35 H -0.002 1.002 36 H 0.262 0.738 37 H 0.025 0.975 38 H 0.034 0.966 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.070 0.930 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.276 -8.669 14.282 22.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.028 4.028 3 C -0.176 4.176 4 C -0.054 4.054 5 C -0.787 4.787 6 S 2.797 3.203 7 O -0.972 6.972 8 O -0.984 6.984 9 N -0.864 5.864 10 C 0.071 3.929 11 H 0.091 0.909 12 C -0.159 4.159 13 C -0.032 4.032 14 C -0.518 4.518 15 C -0.178 4.178 16 N -0.574 5.574 17 Si 0.773 3.227 18 H -0.191 1.191 19 H -0.226 1.226 20 H -0.184 1.184 21 C -0.052 4.052 22 C -0.144 4.144 23 C 0.015 3.985 24 C -0.209 4.209 25 C -0.170 4.170 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.169 0.831 30 H 0.154 0.846 31 H 0.262 0.738 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.042 0.958 35 H 0.017 0.983 36 H 0.071 0.929 37 H 0.043 0.957 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.113 0.887 42 H 0.127 0.873 43 H 0.088 0.912 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.688 -8.136 14.831 22.403 hybrid contribution 0.062 -0.245 -1.247 1.272 sum -14.626 -8.381 13.584 21.649 Atomic orbital electron populations 1.21008 0.88107 1.04640 1.03925 1.20669 0.98219 0.92715 0.91231 1.21455 0.93390 0.99581 1.03157 1.21126 0.95937 0.96482 0.91872 1.30467 1.25628 1.00196 1.22428 1.01262 0.74273 0.72611 0.72199 1.93542 1.82532 1.65529 1.55594 1.93533 1.81655 1.36562 1.86614 1.55450 1.71877 1.37962 1.21123 1.20505 0.96697 0.93506 0.82168 0.90917 1.22010 0.97918 0.98356 0.97610 1.19322 0.96325 0.94973 0.92533 1.20646 1.19037 1.15843 0.96311 1.25663 0.94876 0.97411 0.99862 1.69991 1.28045 1.37991 1.21390 0.85755 0.78638 0.80339 0.78008 1.19056 1.22589 1.18415 1.19655 0.95918 0.95087 0.94585 1.21766 1.01337 0.96658 0.94640 1.19811 0.95165 0.93356 0.90216 1.21402 1.00797 0.94053 1.04632 1.21411 0.92858 0.99438 1.03252 0.89425 0.89479 0.89906 0.83054 0.84581 0.73775 0.93191 0.93789 0.95768 0.98317 0.92902 0.95664 0.94750 0.90548 0.92044 0.88655 0.87346 0.91172 0.82336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 10.01 71.24 0.71 -0.54 16 2 C -0.03 -0.50 5.88 -19.87 -0.12 -0.62 16 3 C -0.16 -3.30 9.70 22.27 0.22 -3.08 16 4 C -0.03 -0.92 9.55 22.27 0.21 -0.71 16 5 C -0.70 -19.17 5.71 22.27 0.13 -19.04 16 6 S 2.70 84.06 4.85 -56.49 -0.27 83.79 16 7 O -0.98 -32.13 16.51 -128.00 -2.11 -34.24 16 8 O -0.99 -37.76 16.21 -128.00 -2.07 -39.83 16 9 N -1.10 -32.15 4.25 -169.45 -0.72 -32.87 16 10 C 0.18 6.29 2.55 44.98 0.11 6.40 16 11 H 0.07 2.60 7.83 -2.39 -0.02 2.58 16 12 C -0.12 -5.15 5.55 30.67 0.17 -4.98 16 13 C 0.01 0.34 5.96 30.11 0.18 0.52 16 14 C -0.50 -25.63 5.52 -16.17 -0.09 -25.72 16 15 C 0.02 1.07 5.46 84.66 0.46 1.54 16 16 N -0.93 -55.00 12.73 21.45 0.27 -54.73 16 17 Si 0.95 42.22 26.80 68.60 1.84 44.06 16 18 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 19 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 20 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 21 C -0.01 -0.59 5.59 30.10 0.17 -0.43 16 22 C -0.10 -3.60 5.47 30.66 0.17 -3.43 16 23 C 0.02 0.36 5.87 -19.86 -0.12 0.25 16 24 C -0.15 -2.87 8.61 71.24 0.61 -2.26 16 25 C -0.15 -2.80 9.34 22.27 0.21 -2.59 16 26 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.09 0.65 8.08 -2.39 -0.02 0.63 16 28 H 0.08 0.70 8.09 -2.39 -0.02 0.68 16 29 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 30 H 0.14 3.66 7.33 -2.91 -0.02 3.63 16 31 H 0.43 10.15 8.45 -96.74 -0.82 9.34 16 32 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.04 1.90 7.61 -2.39 -0.02 1.88 16 34 H 0.02 1.37 7.07 -2.39 -0.02 1.36 16 35 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 36 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 37 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.03 1.39 5.17 -2.38 -0.01 1.38 16 39 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.10 1.79 8.01 -2.39 -0.02 1.77 16 42 H 0.11 1.39 8.05 -2.38 -0.02 1.37 16 43 H 0.07 1.36 5.42 -2.39 -0.01 1.35 16 44 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -70.06 357.85 0.15 -69.91 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.19 Total: 18.60 kcal Atomic # 6 Polarization: -57.72 SS G_CDS: 3.03 Total: -54.69 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -0.45 Total: -87.60 kcal Atomic # 8 Polarization: -69.88 SS G_CDS: -4.19 Total: -74.07 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.84 Total: 44.06 kcal Atomic # 16 Polarization: 84.06 SS G_CDS: -0.27 Total: 83.79 kcal Total: -70.06 0.15 -69.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259102952.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.603 kcal (2) G-P(sol) polarization free energy of solvation -70.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds