Wall clock time and date at job start Tue Mar 31 2020 14:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99871 * 2 1 4 4 C 1.38218 * 119.99714 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00249 * 0.02713 * 4 3 2 6 6 S 1.76204 * 119.99857 * 179.97438 * 5 4 3 7 7 O 1.42104 * 106.39720 * 230.29154 * 6 5 4 8 8 O 1.42093 * 106.40310 * 3.21550 * 6 5 4 9 9 N 1.65605 * 107.21617 * 116.75525 * 6 5 4 10 10 C 1.46490 * 120.00180 * 293.47060 * 9 6 5 11 11 C 1.50701 * 110.01492 * 306.01594 * 10 9 6 12 12 H 1.08004 * 119.99952 * 124.93120 * 11 10 9 13 13 C 1.37879 * 120.00103 * 304.92660 * 11 10 9 14 14 N 1.31511 * 120.00311 * 186.36947 * 13 11 10 15 15 Si 1.86797 * 119.99643 * 6.36459 * 13 11 10 16 16 H 1.48499 * 109.46943 * 93.75074 * 15 13 11 17 17 H 1.48497 * 109.47053 * 213.74722 * 15 13 11 18 18 H 1.48498 * 109.47374 * 333.75170 * 15 13 11 19 19 C 1.54269 * 110.03733 * 184.62386 * 10 9 6 20 20 C 1.54960 * 104.16392 * 217.13806 * 19 10 9 21 21 C 1.54891 * 102.77882 * 37.88382 * 20 19 10 22 22 C 1.53878 * 110.03378 * 67.40572 * 10 9 6 23 23 C 1.38210 * 119.99724 * 359.97438 * 5 4 3 24 24 C 1.50701 * 119.99782 * 179.97438 * 23 5 4 25 25 C 1.38208 * 120.00196 * 180.28077 * 2 1 3 26 26 H 1.09000 * 109.47236 * 89.99595 * 1 2 3 27 27 H 1.08999 * 109.46911 * 210.00095 * 1 2 3 28 28 H 1.09010 * 109.47141 * 329.99761 * 1 2 3 29 29 H 1.07999 * 120.00103 * 0.02562 * 3 2 1 30 30 H 1.08003 * 119.99741 * 180.02562 * 4 3 2 31 31 H 0.97002 * 119.99350 * 113.46910 * 9 6 5 32 32 H 0.96994 * 120.00557 * 179.97438 * 14 13 11 33 33 H 1.09007 * 110.47943 * 335.78390 * 19 10 9 34 34 H 1.08998 * 110.48821 * 98.41897 * 19 10 9 35 35 H 1.09004 * 110.71880 * 279.57314 * 20 19 10 36 36 H 1.08996 * 110.92727 * 156.29280 * 20 19 10 37 37 H 1.08994 * 110.48838 * 203.41047 * 21 20 19 38 38 H 1.08999 * 110.48626 * 80.76306 * 21 20 19 39 39 H 1.09003 * 110.03054 * 238.56770 * 22 10 9 40 40 H 1.08997 * 110.03329 * 359.97438 * 22 10 9 41 41 H 1.09005 * 109.46893 * 83.90897 * 24 23 5 42 42 H 1.09000 * 109.47045 * 323.91031 * 24 23 5 43 43 H 1.09003 * 109.47245 * 203.90579 * 24 23 5 44 44 H 1.08005 * 119.99995 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 16 6.0337 0.0001 0.0005 7 8 6.4349 -0.8708 -1.0483 8 8 6.4350 1.3611 0.0770 9 7 6.5239 -0.7120 1.4130 10 6 6.2581 -0.0553 2.6951 11 6 6.7961 1.3522 2.6751 12 1 6.1438 2.1830 2.9004 13 6 8.1212 1.5795 2.3691 14 7 8.6217 2.7912 2.4732 15 14 9.2055 0.1662 1.8070 16 1 9.2129 0.1079 0.3231 17 1 10.5899 0.3776 2.3009 18 1 8.6758 -1.1105 2.3498 19 6 6.9096 -0.8538 3.8431 20 6 5.8944 -0.7397 5.0082 21 6 4.5288 -0.8261 4.2824 22 6 4.7450 -0.0373 2.9744 23 6 3.5806 -1.1969 0.0005 24 6 4.3341 -2.5020 -0.0001 25 6 2.1981 -1.1969 -0.0059 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5139 29 1 1.6582 2.1326 0.0004 30 1 4.1204 2.1327 0.0010 31 1 6.9871 -1.5641 1.3912 32 1 9.5539 2.9510 2.2583 33 1 7.0434 -1.8964 3.5545 34 1 7.8646 -0.4091 4.1231 35 1 6.0002 0.2171 5.5196 36 1 6.0121 -1.5658 5.7095 37 1 3.7473 -0.3614 4.8834 38 1 4.2775 -1.8642 4.0647 39 1 4.4000 0.9895 3.0964 40 1 4.2084 -0.5168 2.1558 41 1 4.6106 -2.7624 1.0216 42 1 5.2348 -2.4013 -0.6058 43 1 3.7020 -3.2863 -0.4165 44 1 1.6581 -2.1322 -0.0109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259106396.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:25 Heat of formation + Delta-G solvation = -42.044618 kcal Electronic energy + Delta-G solvation = -27739.034911 eV Core-core repulsion = 24169.444246 eV Total energy + Delta-G solvation = -3569.590665 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.42126 -38.08805 -36.35712 -34.83697 -33.61061 -33.00443 -31.93999 -31.79200 -28.11668 -27.41886 -27.29305 -26.68356 -23.83555 -22.23747 -20.99438 -20.42659 -19.31393 -18.48386 -17.26395 -16.61594 -16.47806 -15.78838 -15.14459 -14.95564 -14.84850 -14.24492 -14.08178 -14.01293 -13.76483 -13.30833 -13.06196 -12.85693 -12.60729 -12.32420 -12.32256 -12.05997 -11.98935 -11.91619 -11.57018 -11.31664 -11.13927 -10.98687 -10.91461 -10.75413 -10.51772 -10.39651 -10.33505 -10.11019 -9.98291 -9.73956 -9.71237 -9.17983 -8.80491 -8.54664 -8.49728 -8.16745 -6.06914 -4.05330 1.02361 1.35561 1.51520 3.30899 3.36544 3.44099 3.59538 3.95399 4.46549 4.58447 4.69823 4.84529 4.98483 5.13692 5.22234 5.30777 5.39453 5.44419 5.44917 5.52046 5.60211 5.65115 5.70198 5.73306 5.84439 5.96587 6.07888 6.16172 6.22478 6.30123 6.31193 6.36668 6.41789 6.46661 6.51840 6.55555 6.58753 6.64889 6.80845 6.87270 6.98575 7.08586 7.24838 7.71534 7.99125 8.48951 8.99790 9.58503 11.05517 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015387 B = 0.006643 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.265708 B = 4213.817108 C = 4706.565054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.041 4.041 3 C -0.151 4.151 4 C -0.006 4.006 5 C -0.664 4.664 6 S 2.668 3.332 7 O -0.996 6.996 8 O -0.914 6.914 9 N -1.104 6.104 10 C 0.267 3.733 11 C -0.502 4.502 12 H 0.085 0.915 13 C 0.106 3.894 14 N -0.873 5.873 15 Si 0.859 3.141 16 H -0.283 1.283 17 H -0.297 1.297 18 H -0.250 1.250 19 C -0.110 4.110 20 C -0.116 4.116 21 C -0.117 4.117 22 C -0.138 4.138 23 C 0.018 3.982 24 C -0.170 4.170 25 C -0.150 4.150 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.126 0.874 30 H 0.146 0.854 31 H 0.394 0.606 32 H 0.264 0.736 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.076 0.924 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.985 -9.104 -1.002 15.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.042 4.042 3 C -0.170 4.170 4 C -0.025 4.025 5 C -0.748 4.748 6 S 2.759 3.241 7 O -0.986 6.986 8 O -0.904 6.904 9 N -0.864 5.864 10 C 0.183 3.817 11 C -0.543 4.543 12 H 0.103 0.897 13 C -0.101 4.101 14 N -0.509 5.509 15 Si 0.689 3.311 16 H -0.210 1.210 17 H -0.225 1.225 18 H -0.174 1.174 19 C -0.150 4.150 20 C -0.154 4.154 21 C -0.155 4.155 22 C -0.177 4.177 23 C 0.017 3.983 24 C -0.226 4.226 25 C -0.169 4.169 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.144 0.856 30 H 0.163 0.837 31 H 0.228 0.772 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.120 0.880 43 H 0.095 0.905 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.453 -8.486 -1.720 15.168 hybrid contribution 0.083 -1.154 -0.187 1.172 sum -12.371 -9.640 -1.907 15.799 Atomic orbital electron populations 1.20869 0.91191 1.02985 1.02424 1.20088 0.95889 0.93379 0.94801 1.21096 0.94284 0.97547 1.04052 1.21011 0.94271 0.97253 0.90001 1.31154 1.28733 0.98394 1.16556 1.03199 0.73547 0.74628 0.72772 1.93446 1.81848 1.68008 1.55285 1.93709 1.78371 1.32875 1.85407 1.57049 1.71626 1.34955 1.22813 1.19015 0.91077 0.92502 0.79122 1.21086 0.95716 0.89689 1.47784 0.89679 1.24830 0.97595 0.94869 0.92800 1.69870 1.14303 1.20663 1.46029 0.87452 0.79779 0.84427 0.79491 1.21006 1.22469 1.17406 1.22835 0.98937 0.97869 0.95356 1.22393 0.94809 1.01067 0.97099 1.22253 0.97231 0.99050 0.96973 1.22868 0.97470 1.00531 0.96862 1.19441 0.93917 0.93522 0.91399 1.21562 1.02609 0.94150 1.04274 1.20917 0.93474 0.97534 1.04941 0.90915 0.91402 0.91214 0.85610 0.83662 0.77191 0.92614 0.93581 0.91146 0.91015 0.93039 0.92814 0.92937 0.91146 0.92165 0.89608 0.87953 0.90548 0.85921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 10.01 36.01 0.36 -0.71 16 2 C -0.04 -0.53 5.88 -104.63 -0.62 -1.15 16 3 C -0.15 -2.14 9.70 -39.58 -0.38 -2.53 16 4 C -0.01 -0.11 9.55 -39.58 -0.38 -0.49 16 5 C -0.66 -12.11 3.59 -39.59 -0.14 -12.25 16 6 S 2.67 58.07 4.48 -107.50 -0.48 57.59 16 7 O -1.00 -22.52 15.51 -57.17 -0.89 -23.40 16 8 O -0.91 -23.47 13.40 -57.17 -0.77 -24.23 16 9 N -1.10 -22.51 2.70 0.51 0.00 -22.51 16 10 C 0.27 5.59 0.57 -131.85 -0.08 5.51 16 11 C -0.50 -13.05 6.62 -34.44 -0.23 -13.27 16 12 H 0.09 2.43 7.58 -52.48 -0.40 2.03 16 13 C 0.11 2.96 4.41 -17.82 -0.08 2.88 16 14 N -0.87 -26.26 13.96 55.43 0.77 -25.49 16 15 Si 0.86 21.37 23.33 -169.99 -3.97 17.41 16 16 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 17 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 18 H -0.25 -5.31 4.42 56.52 0.25 -5.06 16 19 C -0.11 -2.09 4.17 -25.03 -0.10 -2.19 16 20 C -0.12 -1.90 6.91 -24.70 -0.17 -2.07 16 21 C -0.12 -1.83 6.83 -25.07 -0.17 -2.00 16 22 C -0.14 -2.54 5.57 -25.61 -0.14 -2.68 16 23 C 0.02 0.29 4.59 -104.62 -0.48 -0.19 16 24 C -0.17 -2.37 9.20 36.01 0.33 -2.04 16 25 C -0.15 -2.02 9.33 -39.59 -0.37 -2.39 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 28 H 0.07 0.57 8.09 -51.92 -0.42 0.15 16 29 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.15 2.59 7.34 -52.48 -0.39 2.20 16 31 H 0.39 7.19 7.10 -34.47 -0.24 6.94 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.05 0.78 7.55 -51.93 -0.39 0.39 16 34 H 0.07 1.46 5.98 -51.93 -0.31 1.15 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.38 7.37 -51.93 -0.38 1.00 16 40 H 0.06 1.04 4.28 -51.93 -0.22 0.81 16 41 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.10 1.63 5.19 -51.93 -0.27 1.36 16 43 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 44 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 LS Contribution 338.81 15.07 5.11 5.11 Total: -1.00 -32.42 338.81 -9.40 -41.82 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -6.53 Total: 9.28 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: -2.65 Total: -35.57 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 0.77 Total: -48.00 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -1.65 Total: -47.63 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -3.97 Total: 17.41 kcal Atomic # 16 Polarization: 58.07 SS G_CDS: -0.48 Total: 57.59 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.42 -9.40 -41.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259106396.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.225 kcal (2) G-P(sol) polarization free energy of solvation -32.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds