Wall clock time and date at job start Tue Mar 31 2020 14:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99871 * 2 1 4 4 C 1.38218 * 119.99714 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00249 * 0.02713 * 4 3 2 6 6 S 1.76204 * 119.99857 * 179.97438 * 5 4 3 7 7 O 1.42104 * 106.39720 * 230.29154 * 6 5 4 8 8 O 1.42093 * 106.40310 * 3.21550 * 6 5 4 9 9 N 1.65605 * 107.21617 * 116.75525 * 6 5 4 10 10 C 1.46490 * 120.00180 * 293.47060 * 9 6 5 11 11 C 1.50701 * 110.01492 * 306.01594 * 10 9 6 12 12 H 1.08004 * 119.99952 * 124.93120 * 11 10 9 13 13 C 1.37879 * 120.00103 * 304.92660 * 11 10 9 14 14 N 1.31511 * 120.00311 * 186.36947 * 13 11 10 15 15 Si 1.86797 * 119.99643 * 6.36459 * 13 11 10 16 16 H 1.48499 * 109.46943 * 93.75074 * 15 13 11 17 17 H 1.48497 * 109.47053 * 213.74722 * 15 13 11 18 18 H 1.48498 * 109.47374 * 333.75170 * 15 13 11 19 19 C 1.54269 * 110.03733 * 184.62386 * 10 9 6 20 20 C 1.54960 * 104.16392 * 217.13806 * 19 10 9 21 21 C 1.54891 * 102.77882 * 37.88382 * 20 19 10 22 22 C 1.53878 * 110.03378 * 67.40572 * 10 9 6 23 23 C 1.38210 * 119.99724 * 359.97438 * 5 4 3 24 24 C 1.50701 * 119.99782 * 179.97438 * 23 5 4 25 25 C 1.38208 * 120.00196 * 180.28077 * 2 1 3 26 26 H 1.09000 * 109.47236 * 89.99595 * 1 2 3 27 27 H 1.08999 * 109.46911 * 210.00095 * 1 2 3 28 28 H 1.09010 * 109.47141 * 329.99761 * 1 2 3 29 29 H 1.07999 * 120.00103 * 0.02562 * 3 2 1 30 30 H 1.08003 * 119.99741 * 180.02562 * 4 3 2 31 31 H 0.97002 * 119.99350 * 113.46910 * 9 6 5 32 32 H 0.96994 * 120.00557 * 179.97438 * 14 13 11 33 33 H 1.09007 * 110.47943 * 335.78390 * 19 10 9 34 34 H 1.08998 * 110.48821 * 98.41897 * 19 10 9 35 35 H 1.09004 * 110.71880 * 279.57314 * 20 19 10 36 36 H 1.08996 * 110.92727 * 156.29280 * 20 19 10 37 37 H 1.08994 * 110.48838 * 203.41047 * 21 20 19 38 38 H 1.08999 * 110.48626 * 80.76306 * 21 20 19 39 39 H 1.09003 * 110.03054 * 238.56770 * 22 10 9 40 40 H 1.08997 * 110.03329 * 359.97438 * 22 10 9 41 41 H 1.09005 * 109.46893 * 83.90897 * 24 23 5 42 42 H 1.09000 * 109.47045 * 323.91031 * 24 23 5 43 43 H 1.09003 * 109.47245 * 203.90579 * 24 23 5 44 44 H 1.08005 * 119.99995 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 16 6.0337 0.0001 0.0005 7 8 6.4349 -0.8708 -1.0483 8 8 6.4350 1.3611 0.0770 9 7 6.5239 -0.7120 1.4130 10 6 6.2581 -0.0553 2.6951 11 6 6.7961 1.3522 2.6751 12 1 6.1438 2.1830 2.9004 13 6 8.1212 1.5795 2.3691 14 7 8.6217 2.7912 2.4732 15 14 9.2055 0.1662 1.8070 16 1 9.2129 0.1079 0.3231 17 1 10.5899 0.3776 2.3009 18 1 8.6758 -1.1105 2.3498 19 6 6.9096 -0.8538 3.8431 20 6 5.8944 -0.7397 5.0082 21 6 4.5288 -0.8261 4.2824 22 6 4.7450 -0.0373 2.9744 23 6 3.5806 -1.1969 0.0005 24 6 4.3341 -2.5020 -0.0001 25 6 2.1981 -1.1969 -0.0059 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5139 29 1 1.6582 2.1326 0.0004 30 1 4.1204 2.1327 0.0010 31 1 6.9871 -1.5641 1.3912 32 1 9.5539 2.9510 2.2583 33 1 7.0434 -1.8964 3.5545 34 1 7.8646 -0.4091 4.1231 35 1 6.0002 0.2171 5.5196 36 1 6.0121 -1.5658 5.7095 37 1 3.7473 -0.3614 4.8834 38 1 4.2775 -1.8642 4.0647 39 1 4.4000 0.9895 3.0964 40 1 4.2084 -0.5168 2.1558 41 1 4.6106 -2.7624 1.0216 42 1 5.2348 -2.4013 -0.6058 43 1 3.7020 -3.2863 -0.4165 44 1 1.6581 -2.1322 -0.0109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259106396.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:24 Heat of formation + Delta-G solvation = -65.135815 kcal Electronic energy + Delta-G solvation = -27740.036220 eV Core-core repulsion = 24169.444246 eV Total energy + Delta-G solvation = -3570.591975 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.58960 -39.66021 -38.12825 -36.69218 -34.73114 -34.64558 -33.82068 -33.01515 -29.55144 -29.06921 -28.31852 -27.83122 -25.65416 -23.41959 -22.19265 -21.80973 -20.96690 -20.06820 -18.91608 -18.42369 -18.15840 -17.18361 -16.91344 -16.39583 -16.00770 -15.72055 -15.55557 -15.29692 -15.11721 -14.73381 -14.19795 -14.16441 -13.94543 -13.86477 -13.74987 -13.42025 -13.23395 -13.14809 -13.00265 -12.85268 -12.75607 -12.66160 -12.46109 -12.26992 -12.07624 -12.05614 -11.74590 -11.66843 -11.45194 -11.28491 -11.18064 -11.08418 -10.61740 -10.00483 -9.86916 -9.69505 -8.22514 -6.21429 -0.40555 -0.09942 0.35993 1.27026 1.29998 1.39570 2.17534 2.39329 2.53650 2.93925 3.23576 3.59549 3.76129 3.88839 3.90383 4.03155 4.08032 4.22898 4.30968 4.39696 4.52915 4.68370 4.71162 4.73420 4.73910 4.77772 4.85602 4.89063 4.98611 5.00394 5.03383 5.13042 5.15520 5.22813 5.24290 5.29534 5.32798 5.37174 5.40307 5.52928 5.57363 5.74390 5.82959 5.97548 6.37409 6.43674 6.84033 7.46387 8.95084 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015387 B = 0.006643 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.265708 B = 4213.817108 C = 4706.565054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.029 4.029 3 C -0.154 4.154 4 C -0.032 4.032 5 C -0.678 4.678 6 S 2.670 3.330 7 O -1.010 7.010 8 O -0.970 6.970 9 N -1.100 6.100 10 C 0.266 3.734 11 C -0.492 4.492 12 H 0.040 0.960 13 C 0.052 3.948 14 N -0.935 5.935 15 Si 0.887 3.113 16 H -0.305 1.305 17 H -0.302 1.302 18 H -0.188 1.188 19 C -0.117 4.117 20 C -0.111 4.111 21 C -0.108 4.108 22 C -0.136 4.136 23 C 0.012 3.988 24 C -0.175 4.175 25 C -0.145 4.145 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.148 0.852 30 H 0.118 0.882 31 H 0.409 0.591 32 H 0.258 0.742 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.043 0.957 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.111 0.889 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.965 -13.792 -0.321 21.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.029 4.029 3 C -0.173 4.173 4 C -0.052 4.052 5 C -0.768 4.768 6 S 2.765 3.235 7 O -1.001 7.001 8 O -0.960 6.960 9 N -0.863 5.863 10 C 0.181 3.819 11 C -0.532 4.532 12 H 0.058 0.942 13 C -0.148 4.148 14 N -0.575 5.575 15 Si 0.714 3.286 16 H -0.233 1.233 17 H -0.230 1.230 18 H -0.110 1.110 19 C -0.157 4.157 20 C -0.149 4.149 21 C -0.146 4.146 22 C -0.175 4.175 23 C 0.011 3.989 24 C -0.231 4.231 25 C -0.163 4.163 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.166 0.834 30 H 0.136 0.864 31 H 0.245 0.755 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.120 0.880 42 H 0.096 0.904 43 H 0.129 0.871 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -16.375 -13.204 -1.000 21.059 hybrid contribution 1.048 0.338 -0.503 1.211 sum -15.326 -12.866 -1.503 20.067 Atomic orbital electron populations 1.20984 0.87801 1.04612 1.03932 1.20612 0.98215 0.92384 0.91678 1.21371 0.92819 0.99698 1.03431 1.20965 0.95978 0.96146 0.92084 1.30367 1.25351 1.00248 1.20836 1.02298 0.75194 0.73283 0.72705 1.93429 1.83221 1.67733 1.55673 1.93659 1.80793 1.35592 1.85995 1.56429 1.72434 1.35167 1.22242 1.18990 0.93205 0.89980 0.79707 1.21259 0.94534 0.91607 1.45828 0.94220 1.25499 0.99284 0.96542 0.93493 1.70022 1.14349 1.23156 1.49981 0.86986 0.78511 0.85211 0.77853 1.23303 1.23017 1.10961 1.22860 0.98569 0.98953 0.95328 1.22377 0.94336 1.01588 0.96644 1.22256 0.97118 1.00345 0.94856 1.22776 0.95248 0.99962 0.99516 1.19761 0.95292 0.92967 0.90881 1.21664 1.02139 0.94158 1.05126 1.21375 0.92410 0.99420 1.03128 0.89213 0.89281 0.90218 0.83441 0.86359 0.75474 0.93318 0.90191 0.93349 0.93006 0.89389 0.91332 0.89770 0.93858 0.90601 0.87955 0.90353 0.87071 0.81908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 10.01 71.24 0.71 -0.74 16 2 C -0.03 -0.61 5.88 -19.87 -0.12 -0.73 16 3 C -0.15 -4.11 9.70 22.27 0.22 -3.89 16 4 C -0.03 -1.13 9.55 22.27 0.21 -0.92 16 5 C -0.68 -24.49 3.59 22.27 0.08 -24.41 16 6 S 2.67 119.28 4.48 -56.49 -0.25 119.03 16 7 O -1.01 -46.33 15.51 -128.00 -1.99 -48.31 16 8 O -0.97 -53.63 13.40 -128.00 -1.71 -55.34 16 9 N -1.10 -44.03 2.70 -152.31 -0.41 -44.44 16 10 C 0.27 11.06 0.57 3.59 0.00 11.06 16 11 C -0.49 -27.12 6.62 25.60 0.17 -26.95 16 12 H 0.04 2.48 7.58 -2.91 -0.02 2.46 16 13 C 0.05 3.08 4.41 84.66 0.37 3.45 16 14 N -0.94 -60.97 13.96 21.45 0.30 -60.67 16 15 Si 0.89 44.80 23.33 68.60 1.60 46.40 16 16 H -0.30 -16.43 7.11 99.48 0.71 -15.72 16 17 H -0.30 -15.38 7.11 99.48 0.71 -14.67 16 18 H -0.19 -7.50 4.42 99.48 0.44 -7.06 16 19 C -0.12 -4.16 4.17 31.69 0.13 -4.03 16 20 C -0.11 -3.30 6.91 31.91 0.22 -3.07 16 21 C -0.11 -2.94 6.83 31.67 0.22 -2.72 16 22 C -0.14 -4.82 5.57 31.32 0.17 -4.65 16 23 C 0.01 0.35 4.59 -19.87 -0.09 0.26 16 24 C -0.17 -4.18 9.20 71.24 0.66 -3.52 16 25 C -0.14 -3.16 9.33 22.27 0.21 -2.95 16 26 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.09 0.81 8.09 -2.39 -0.02 0.79 16 28 H 0.08 0.89 8.09 -2.38 -0.02 0.87 16 29 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 30 H 0.12 4.68 7.34 -2.91 -0.02 4.66 16 31 H 0.41 13.94 7.10 -96.74 -0.69 13.25 16 32 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 33 H 0.08 2.32 7.55 -2.38 -0.02 2.30 16 34 H 0.05 1.94 5.98 -2.39 -0.01 1.93 16 35 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 39 H 0.04 1.74 7.37 -2.39 -0.02 1.72 16 40 H 0.08 2.44 4.28 -2.39 -0.01 2.43 16 41 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 42 H 0.08 2.31 5.19 -2.39 -0.01 2.30 16 43 H 0.11 1.86 8.04 -2.39 -0.02 1.84 16 44 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -79.93 338.81 0.76 -79.17 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: 0.06 Total: 27.99 kcal Atomic # 6 Polarization: -66.98 SS G_CDS: 3.16 Total: -63.82 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -0.11 Total: -105.12 kcal Atomic # 8 Polarization: -99.95 SS G_CDS: -3.70 Total: -103.65 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.60 Total: 46.40 kcal Atomic # 16 Polarization: 119.28 SS G_CDS: -0.25 Total: 119.03 kcal Total: -79.93 0.76 -79.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259106396.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.034 kcal (2) G-P(sol) polarization free energy of solvation -79.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds