Wall clock time and date at job start Tue Mar 31 2020 14:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38259 * 119.99796 * 2 1 4 4 C 1.38214 * 119.99989 * 179.79000 * 3 2 1 5 5 C 1.38258 * 120.00028 * 0.42518 * 4 3 2 6 6 S 1.76194 * 120.00137 * 179.81168 * 5 4 3 7 7 O 1.42095 * 106.40700 * 156.18240 * 6 5 4 8 8 O 1.42102 * 106.40095 * 23.25776 * 6 5 4 9 9 N 1.65603 * 107.21470 * 269.72378 * 6 5 4 10 10 C 1.46503 * 120.00297 * 65.00006 * 9 6 5 11 11 H 1.09007 * 109.40835 * 25.13992 * 10 9 6 12 12 C 1.52961 * 109.41437 * 144.99777 * 10 9 6 13 13 C 1.53225 * 109.40185 * 183.70406 * 12 10 9 14 14 C 1.51267 * 108.53929 * 305.37600 * 13 12 10 15 15 C 1.37885 * 120.84902 * 231.32736 * 14 13 12 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 14 13 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 14 13 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 14 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 14 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 14 21 21 C 1.51265 * 118.30210 * 51.59623 * 14 13 12 22 22 C 1.52954 * 109.41145 * 265.35318 * 10 9 6 23 23 C 1.38216 * 119.99750 * 359.52920 * 5 4 3 24 24 C 1.38213 * 120.00301 * 179.97438 * 2 1 3 25 25 C 1.50696 * 119.99889 * 359.97438 * 24 2 1 26 26 H 1.09004 * 109.47025 * 270.01551 * 1 2 3 27 27 H 1.08994 * 109.47475 * 30.02344 * 1 2 3 28 28 H 1.09008 * 109.46937 * 150.02559 * 1 2 3 29 29 H 1.07998 * 119.99896 * 0.02562 * 3 2 1 30 30 H 1.08002 * 119.99672 * 180.23072 * 4 3 2 31 31 H 0.97000 * 119.99629 * 244.99441 * 9 6 5 32 32 H 1.08992 * 109.47967 * 63.72575 * 12 10 9 33 33 H 1.08993 * 109.48258 * 303.68169 * 12 10 9 34 34 H 1.09002 * 109.62848 * 185.65947 * 13 12 10 35 35 H 1.08999 * 109.78770 * 65.18096 * 13 12 10 36 36 H 0.97001 * 119.99646 * 179.97438 * 16 15 14 37 37 H 1.08993 * 109.62491 * 68.12028 * 21 14 13 38 38 H 1.08999 * 109.62983 * 188.69155 * 21 14 13 39 39 H 1.09001 * 109.48614 * 296.27238 * 22 10 9 40 40 H 1.09002 * 109.48431 * 56.30231 * 22 10 9 41 41 H 1.08001 * 119.99597 * 180.25691 * 23 5 4 42 42 H 1.09001 * 109.47358 * 270.02177 * 25 24 2 43 43 H 1.08992 * 109.47543 * 30.02330 * 25 24 2 44 44 H 1.09002 * 109.46797 * 150.02462 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0044 5 6 4.2717 0.0001 -0.0001 6 16 6.0336 0.0002 0.0005 7 8 6.4349 -1.2490 0.5461 8 8 6.4347 1.2505 0.5438 9 7 6.5243 -0.0012 -1.5812 10 6 6.2292 1.1479 -2.4408 11 1 6.1076 2.0391 -1.8250 12 6 7.3848 1.3603 -3.4201 13 6 7.1189 2.6165 -4.2563 14 6 5.7629 2.4793 -4.9125 15 6 5.6109 2.6738 -6.2691 16 7 6.6527 2.9832 -7.0098 17 14 3.9254 2.4978 -7.0548 18 1 3.7245 1.0909 -7.4856 19 1 2.8785 2.8678 -6.0687 20 1 3.8332 3.3947 -8.2347 21 6 4.5767 2.1295 -4.0414 22 6 4.9357 0.8855 -3.2139 23 6 3.5807 -1.1969 0.0008 24 6 2.1981 -1.1969 0.0005 25 6 1.4446 -2.5020 0.0017 26 1 -0.3633 0.0003 1.0277 27 1 -0.3634 0.8897 -0.5142 28 1 -0.3633 -0.8903 -0.5135 29 1 1.6582 2.1326 0.0004 30 1 4.1203 2.1328 0.0082 31 1 7.0071 -0.7628 -1.9385 32 1 7.4666 0.4957 -4.0788 33 1 8.3142 1.4836 -2.8644 34 1 7.8879 2.7159 -5.0224 35 1 7.1270 3.4964 -3.6132 36 1 6.5458 3.1197 -7.9642 37 1 4.3526 2.9632 -3.3761 38 1 3.7117 1.9159 -4.6693 39 1 5.0755 0.0322 -3.8774 40 1 4.1296 0.6720 -2.5120 41 1 4.1207 -2.1321 0.0015 42 1 1.2630 -2.8158 1.0296 43 1 0.4923 -2.3722 -0.5122 44 1 2.0338 -3.2621 -0.5115 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259169023.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:57 Heat of formation + Delta-G solvation = -75.107981 kcal Electronic energy + Delta-G solvation = -26171.791069 eV Core-core repulsion = 22600.766669 eV Total energy + Delta-G solvation = -3571.024400 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.70284 -37.59721 -36.94053 -35.67723 -33.75644 -33.65355 -32.35913 -31.27786 -29.66345 -27.94451 -26.95343 -26.72383 -22.46088 -22.13151 -21.60954 -21.44661 -19.69868 -19.05038 -17.61653 -17.18829 -16.31299 -16.02165 -15.55251 -15.32118 -14.57404 -14.52638 -14.47356 -14.22140 -13.33600 -13.30606 -13.05628 -12.98506 -12.88926 -12.57777 -12.43797 -12.28817 -12.23082 -12.10950 -11.93644 -11.90360 -11.84628 -11.49347 -11.19288 -11.12301 -10.90263 -10.64964 -10.64401 -10.22061 -10.01979 -9.78992 -9.22982 -9.16445 -8.96729 -8.83192 -8.51343 -8.47017 -6.14161 -4.04889 0.54482 0.83513 1.23338 3.13578 3.22954 3.32060 3.32601 3.46347 3.94567 4.34051 4.40055 4.57976 4.68900 4.75416 4.95981 5.11080 5.12962 5.24191 5.27419 5.41106 5.41672 5.50623 5.59248 5.60799 5.76195 5.85346 5.93930 5.98026 6.05819 6.06503 6.15240 6.38206 6.45006 6.53745 6.69648 6.77989 6.79478 6.97345 6.99729 7.09876 7.30147 7.39664 7.61548 7.71239 7.80489 8.34193 8.92950 9.50423 10.95380 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012338 B = 0.004976 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.863170 B = 5625.386470 C = 7170.905684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.035 4.035 3 C -0.137 4.137 4 C -0.014 4.014 5 C -0.671 4.671 6 S 2.692 3.308 7 O -0.973 6.973 8 O -0.960 6.960 9 N -1.110 6.110 10 C 0.158 3.842 11 H 0.081 0.919 12 C -0.109 4.109 13 C 0.010 3.990 14 C -0.489 4.489 15 C 0.077 3.923 16 N -0.888 5.888 17 Si 0.887 3.113 18 H -0.279 1.279 19 H -0.267 1.267 20 H -0.290 1.290 21 C -0.013 4.013 22 C -0.126 4.126 23 C -0.015 4.015 24 C -0.113 4.113 25 C -0.116 4.116 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.131 0.869 30 H 0.140 0.860 31 H 0.414 0.586 32 H 0.056 0.944 33 H 0.039 0.961 34 H 0.061 0.939 35 H 0.008 0.992 36 H 0.264 0.736 37 H 0.019 0.981 38 H 0.032 0.968 39 H 0.058 0.942 40 H 0.037 0.963 41 H 0.137 0.863 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.006 -8.174 12.746 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.035 4.035 3 C -0.155 4.155 4 C -0.034 4.034 5 C -0.758 4.758 6 S 2.782 3.218 7 O -0.963 6.963 8 O -0.950 6.950 9 N -0.870 5.870 10 C 0.052 3.948 11 H 0.099 0.901 12 C -0.149 4.149 13 C -0.028 4.028 14 C -0.508 4.508 15 C -0.126 4.126 16 N -0.526 5.526 17 Si 0.715 3.285 18 H -0.205 1.205 19 H -0.192 1.192 20 H -0.216 1.216 21 C -0.052 4.052 22 C -0.166 4.166 23 C -0.035 4.035 24 C -0.114 4.114 25 C -0.173 4.173 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.149 0.851 30 H 0.158 0.842 31 H 0.249 0.751 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.026 0.974 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.050 0.950 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.155 0.845 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.505 -7.972 13.377 18.244 hybrid contribution -1.399 -0.436 -1.086 1.824 sum -10.904 -8.408 12.291 18.457 Atomic orbital electron populations 1.20985 0.90925 1.03504 1.02704 1.20054 0.96201 0.92812 0.94449 1.21141 0.94192 0.97826 1.02374 1.20921 0.94718 0.96691 0.91039 1.30943 1.27325 0.99381 1.18148 1.01809 0.73712 0.73437 0.72876 1.93549 1.81633 1.44037 1.77067 1.93579 1.80524 1.44126 1.76787 1.55666 1.71531 1.29259 1.30561 1.20940 0.97040 0.85244 0.91540 0.90068 1.21890 0.94277 1.02153 0.96542 1.19383 0.97557 0.90862 0.95022 1.20036 0.92467 1.46654 0.91685 1.24838 0.96501 0.94596 0.96662 1.69832 1.29465 1.47035 1.06228 0.86688 0.85078 0.78128 0.78601 1.20493 1.19241 1.21630 1.19795 0.96738 0.92834 0.95790 1.22210 0.94885 1.01100 0.98362 1.20722 0.93874 0.96528 0.92350 1.19823 0.93667 0.95228 1.02667 1.20857 1.00171 0.93804 1.02452 0.90583 0.90990 0.90704 0.85098 0.84177 0.75140 0.92512 0.94187 0.92061 0.97388 0.92560 0.96259 0.94996 0.92322 0.94417 0.84537 0.91072 0.91004 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.60 36.00 0.35 -0.65 16 2 C -0.03 -0.39 5.88 -104.63 -0.62 -1.01 16 3 C -0.14 -1.65 9.70 -39.58 -0.38 -2.04 16 4 C -0.01 -0.20 8.65 -39.58 -0.34 -0.54 16 5 C -0.67 -9.62 4.94 -39.58 -0.20 -9.81 16 6 S 2.69 41.90 5.72 -107.50 -0.61 41.28 16 7 O -0.97 -16.36 17.28 -57.17 -0.99 -17.35 16 8 O -0.96 -17.43 16.61 -57.17 -0.95 -18.38 16 9 N -1.11 -17.02 5.47 -4.92 -0.03 -17.05 16 10 C 0.16 2.87 2.68 -67.97 -0.18 2.68 16 11 H 0.08 1.51 7.50 -51.92 -0.39 1.12 16 12 C -0.11 -2.18 5.46 -26.63 -0.15 -2.33 16 13 C 0.01 0.24 5.97 -27.49 -0.16 0.07 16 14 C -0.49 -12.33 5.50 -98.92 -0.54 -12.88 16 15 C 0.08 2.03 5.46 -17.82 -0.10 1.94 16 16 N -0.89 -24.87 12.73 55.43 0.71 -24.16 16 17 Si 0.89 20.53 27.28 -169.99 -4.64 15.89 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.27 -5.99 6.45 56.52 0.36 -5.62 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 C -0.01 -0.29 5.62 -27.26 -0.15 -0.45 16 22 C -0.13 -2.39 5.55 -26.41 -0.15 -2.53 16 23 C -0.02 -0.20 9.18 -39.58 -0.36 -0.56 16 24 C -0.11 -1.30 5.88 -104.63 -0.62 -1.92 16 25 C -0.12 -0.98 9.60 36.00 0.35 -0.63 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 28 H 0.07 0.52 5.95 -51.92 -0.31 0.21 16 29 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.14 1.89 7.61 -52.49 -0.40 1.49 16 31 H 0.41 5.50 8.83 -34.47 -0.30 5.19 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 1.61 7.07 -51.93 -0.37 1.24 16 35 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.03 0.70 4.77 -51.93 -0.25 0.46 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.04 0.64 6.11 -51.93 -0.32 0.32 16 41 H 0.14 1.60 7.62 -52.49 -0.40 1.20 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.51 5.95 -51.93 -0.31 0.20 16 44 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 LS Contribution 356.39 15.07 5.37 5.37 Total: -1.00 -31.27 356.39 -10.83 -42.10 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.44 Total: 2.93 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: -3.26 Total: -30.66 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.68 Total: -41.21 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -1.94 Total: -35.72 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.64 Total: 15.89 kcal Atomic # 16 Polarization: 41.90 SS G_CDS: -0.61 Total: 41.28 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.27 -10.83 -42.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259169023.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.004 kcal (2) G-P(sol) polarization free energy of solvation -31.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds