Wall clock time and date at job start Tue Mar 31 2020 14:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38259 * 119.99796 * 2 1 4 4 C 1.38214 * 119.99989 * 179.79000 * 3 2 1 5 5 C 1.38258 * 120.00028 * 0.42518 * 4 3 2 6 6 S 1.76194 * 120.00137 * 179.81168 * 5 4 3 7 7 O 1.42095 * 106.40700 * 156.18240 * 6 5 4 8 8 O 1.42102 * 106.40095 * 23.25776 * 6 5 4 9 9 N 1.65603 * 107.21470 * 269.72378 * 6 5 4 10 10 C 1.46503 * 120.00297 * 65.00006 * 9 6 5 11 11 H 1.09007 * 109.40835 * 25.13992 * 10 9 6 12 12 C 1.52961 * 109.41437 * 144.99777 * 10 9 6 13 13 C 1.53225 * 109.40185 * 183.70406 * 12 10 9 14 14 C 1.51267 * 108.53929 * 305.37600 * 13 12 10 15 15 C 1.37885 * 120.84902 * 231.32736 * 14 13 12 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 14 13 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 14 13 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 14 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 14 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 14 21 21 C 1.51265 * 118.30210 * 51.59623 * 14 13 12 22 22 C 1.52954 * 109.41145 * 265.35318 * 10 9 6 23 23 C 1.38216 * 119.99750 * 359.52920 * 5 4 3 24 24 C 1.38213 * 120.00301 * 179.97438 * 2 1 3 25 25 C 1.50696 * 119.99889 * 359.97438 * 24 2 1 26 26 H 1.09004 * 109.47025 * 270.01551 * 1 2 3 27 27 H 1.08994 * 109.47475 * 30.02344 * 1 2 3 28 28 H 1.09008 * 109.46937 * 150.02559 * 1 2 3 29 29 H 1.07998 * 119.99896 * 0.02562 * 3 2 1 30 30 H 1.08002 * 119.99672 * 180.23072 * 4 3 2 31 31 H 0.97000 * 119.99629 * 244.99441 * 9 6 5 32 32 H 1.08992 * 109.47967 * 63.72575 * 12 10 9 33 33 H 1.08993 * 109.48258 * 303.68169 * 12 10 9 34 34 H 1.09002 * 109.62848 * 185.65947 * 13 12 10 35 35 H 1.08999 * 109.78770 * 65.18096 * 13 12 10 36 36 H 0.97001 * 119.99646 * 179.97438 * 16 15 14 37 37 H 1.08993 * 109.62491 * 68.12028 * 21 14 13 38 38 H 1.08999 * 109.62983 * 188.69155 * 21 14 13 39 39 H 1.09001 * 109.48614 * 296.27238 * 22 10 9 40 40 H 1.09002 * 109.48431 * 56.30231 * 22 10 9 41 41 H 1.08001 * 119.99597 * 180.25691 * 23 5 4 42 42 H 1.09001 * 109.47358 * 270.02177 * 25 24 2 43 43 H 1.08992 * 109.47543 * 30.02330 * 25 24 2 44 44 H 1.09002 * 109.46797 * 150.02462 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0044 5 6 4.2717 0.0001 -0.0001 6 16 6.0336 0.0002 0.0005 7 8 6.4349 -1.2490 0.5461 8 8 6.4347 1.2505 0.5438 9 7 6.5243 -0.0012 -1.5812 10 6 6.2292 1.1479 -2.4408 11 1 6.1076 2.0391 -1.8250 12 6 7.3848 1.3603 -3.4201 13 6 7.1189 2.6165 -4.2563 14 6 5.7629 2.4793 -4.9125 15 6 5.6109 2.6738 -6.2691 16 7 6.6527 2.9832 -7.0098 17 14 3.9254 2.4978 -7.0548 18 1 3.7245 1.0909 -7.4856 19 1 2.8785 2.8678 -6.0687 20 1 3.8332 3.3947 -8.2347 21 6 4.5767 2.1295 -4.0414 22 6 4.9357 0.8855 -3.2139 23 6 3.5807 -1.1969 0.0008 24 6 2.1981 -1.1969 0.0005 25 6 1.4446 -2.5020 0.0017 26 1 -0.3633 0.0003 1.0277 27 1 -0.3634 0.8897 -0.5142 28 1 -0.3633 -0.8903 -0.5135 29 1 1.6582 2.1326 0.0004 30 1 4.1203 2.1328 0.0082 31 1 7.0071 -0.7628 -1.9385 32 1 7.4666 0.4957 -4.0788 33 1 8.3142 1.4836 -2.8644 34 1 7.8879 2.7159 -5.0224 35 1 7.1270 3.4964 -3.6132 36 1 6.5458 3.1197 -7.9642 37 1 4.3526 2.9632 -3.3761 38 1 3.7117 1.9159 -4.6693 39 1 5.0755 0.0322 -3.8774 40 1 4.1296 0.6720 -2.5120 41 1 4.1207 -2.1321 0.0015 42 1 1.2630 -2.8158 1.0296 43 1 0.4923 -2.3722 -0.5122 44 1 2.0338 -3.2621 -0.5115 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259169023.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:56 Heat of formation + Delta-G solvation = -94.902377 kcal Electronic energy + Delta-G solvation = -26172.649419 eV Core-core repulsion = 22600.766669 eV Total energy + Delta-G solvation = -3571.882750 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.59015 -39.16902 -38.29284 -37.00171 -35.41696 -34.54406 -33.18813 -33.03786 -31.40042 -28.70498 -28.64059 -27.55466 -23.90435 -23.41667 -23.18736 -22.46154 -21.31168 -20.32920 -18.82587 -18.47070 -17.82146 -17.32577 -16.72673 -16.39392 -16.28923 -15.82312 -15.27182 -15.20275 -15.00197 -14.60668 -14.24435 -14.19690 -14.05254 -13.97480 -13.61821 -13.60573 -13.27612 -13.18845 -13.16256 -13.14968 -13.04194 -12.81300 -12.63727 -12.61979 -12.36713 -12.03004 -11.87471 -11.82769 -11.66739 -11.46319 -10.90140 -10.75503 -10.51607 -10.17659 -10.00727 -9.71546 -8.13979 -6.07658 -0.63825 -0.17744 0.31027 1.39556 1.43125 1.51230 1.96311 2.42881 2.44218 2.76873 3.14335 3.29109 3.75914 3.84314 3.90959 3.94020 4.18650 4.20815 4.24932 4.43199 4.48934 4.55299 4.67051 4.72114 4.78607 4.79157 4.91200 4.92844 4.95601 5.01745 5.09673 5.10133 5.14425 5.20624 5.27026 5.28222 5.34458 5.47473 5.55469 5.62492 5.68483 5.80054 5.85730 5.92780 6.14962 6.38220 6.98869 7.50072 8.97046 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012338 B = 0.004976 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.863170 B = 5625.386470 C = 7170.905684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.035 4.035 3 C -0.144 4.144 4 C -0.036 4.036 5 C -0.682 4.682 6 S 2.707 3.293 7 O -0.986 6.986 8 O -0.990 6.990 9 N -1.104 6.104 10 C 0.167 3.833 11 H 0.078 0.922 12 C -0.103 4.103 13 C 0.005 3.995 14 C -0.496 4.496 15 C 0.022 3.978 16 N -0.932 5.932 17 Si 0.938 3.062 18 H -0.274 1.274 19 H -0.251 1.251 20 H -0.295 1.295 21 C -0.017 4.017 22 C -0.118 4.118 23 C -0.030 4.030 24 C -0.117 4.117 25 C -0.117 4.117 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.151 0.849 30 H 0.136 0.864 31 H 0.424 0.576 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.029 0.971 35 H 0.002 0.998 36 H 0.262 0.738 37 H 0.024 0.976 38 H 0.034 0.966 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.145 0.855 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.938 -9.682 13.945 21.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.035 4.035 3 C -0.162 4.162 4 C -0.055 4.055 5 C -0.771 4.771 6 S 2.800 3.200 7 O -0.976 6.976 8 O -0.980 6.980 9 N -0.864 5.864 10 C 0.061 3.939 11 H 0.096 0.904 12 C -0.142 4.142 13 C -0.033 4.033 14 C -0.516 4.516 15 C -0.176 4.176 16 N -0.572 5.572 17 Si 0.765 3.235 18 H -0.200 1.200 19 H -0.176 1.176 20 H -0.222 1.222 21 C -0.055 4.055 22 C -0.158 4.158 23 C -0.049 4.049 24 C -0.118 4.118 25 C -0.173 4.173 26 H 0.110 0.890 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.169 0.831 30 H 0.153 0.847 31 H 0.261 0.739 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.021 0.979 36 H 0.071 0.929 37 H 0.043 0.957 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.163 0.837 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.408 -9.497 14.593 21.380 hybrid contribution -0.521 0.037 -1.367 1.463 sum -12.929 -9.460 13.226 20.775 Atomic orbital electron populations 1.21081 0.88386 1.04566 1.04010 1.20500 0.98089 0.92257 0.92684 1.21451 0.93589 0.99330 1.01855 1.21042 0.95800 0.96373 0.92309 1.30573 1.25703 1.00366 1.20464 1.01095 0.74207 0.72395 0.72299 1.93525 1.82488 1.44415 1.77200 1.93538 1.81716 1.45391 1.77379 1.55406 1.72092 1.28861 1.30090 1.20632 0.95878 0.86141 0.91243 0.90403 1.21727 0.95913 0.99970 0.96623 1.19352 0.96653 0.92650 0.94684 1.20639 0.93907 1.44875 0.92162 1.25595 0.99439 0.95002 0.97556 1.69977 1.31459 1.49447 1.06278 0.85845 0.81829 0.78036 0.77808 1.20014 1.17562 1.22231 1.19827 0.95454 0.94425 0.95819 1.22088 0.95896 0.99380 0.98396 1.20967 0.94931 0.96311 0.92684 1.20227 0.93261 0.96879 1.01423 1.20954 1.00543 0.92209 1.03641 0.88973 0.90272 0.89353 0.83145 0.84664 0.73941 0.92678 0.92791 0.95224 0.97945 0.92917 0.95710 0.94767 0.92481 0.92087 0.83749 0.89722 0.89372 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 9.60 71.23 0.68 -0.78 16 2 C -0.03 -0.67 5.88 -19.87 -0.12 -0.78 16 3 C -0.14 -3.12 9.70 22.27 0.22 -2.90 16 4 C -0.04 -0.94 8.65 22.27 0.19 -0.75 16 5 C -0.68 -18.56 4.94 22.27 0.11 -18.45 16 6 S 2.71 82.13 5.72 -56.49 -0.32 81.80 16 7 O -0.99 -32.26 17.28 -128.00 -2.21 -34.47 16 8 O -0.99 -35.77 16.61 -128.00 -2.13 -37.90 16 9 N -1.10 -32.58 5.47 -169.49 -0.93 -33.51 16 10 C 0.17 5.92 2.68 44.96 0.12 6.04 16 11 H 0.08 2.84 7.50 -2.38 -0.02 2.82 16 12 C -0.10 -4.10 5.46 30.66 0.17 -3.94 16 13 C 0.00 0.24 5.97 30.10 0.18 0.42 16 14 C -0.50 -25.10 5.50 -16.17 -0.09 -25.19 16 15 C 0.02 1.18 5.46 84.66 0.46 1.65 16 16 N -0.93 -53.74 12.73 21.45 0.27 -53.47 16 17 Si 0.94 41.89 27.28 68.60 1.87 43.76 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.25 -10.46 6.45 99.48 0.64 -9.82 16 20 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 21 C -0.02 -0.73 5.62 30.25 0.17 -0.56 16 22 C -0.12 -4.27 5.55 30.80 0.17 -4.10 16 23 C -0.03 -0.71 9.18 22.27 0.20 -0.50 16 24 C -0.12 -2.34 5.88 -19.87 -0.12 -2.45 16 25 C -0.12 -1.54 9.60 71.23 0.68 -0.85 16 26 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.08 0.85 8.09 -2.39 -0.02 0.83 16 28 H 0.09 0.82 5.95 -2.38 -0.01 0.80 16 29 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 30 H 0.14 3.57 7.61 -2.91 -0.02 3.55 16 31 H 0.42 10.70 8.83 -96.75 -0.85 9.84 16 32 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.03 1.61 7.07 -2.39 -0.02 1.59 16 35 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 36 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 37 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.03 1.43 4.77 -2.39 -0.01 1.42 16 39 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.06 1.93 6.11 -2.39 -0.01 1.92 16 41 H 0.14 3.10 7.62 -2.91 -0.02 3.08 16 42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.09 0.87 5.95 -2.39 -0.01 0.86 16 44 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 Total: -1.00 -67.53 356.39 -0.30 -67.83 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.10 Total: 19.09 kcal Atomic # 6 Polarization: -56.18 SS G_CDS: 3.04 Total: -53.14 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -0.65 Total: -86.97 kcal Atomic # 8 Polarization: -68.03 SS G_CDS: -4.34 Total: -72.37 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.87 Total: 43.76 kcal Atomic # 16 Polarization: 82.13 SS G_CDS: -0.32 Total: 81.80 kcal Total: -67.53 -0.30 -67.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259169023.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.069 kcal (2) G-P(sol) polarization free energy of solvation -67.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds