Wall clock time and date at job start Tue Mar 31 2020 14:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38255 * 119.99838 * 2 1 4 4 C 1.38220 * 119.99681 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00047 * 0.02867 * 4 3 2 6 6 S 1.76203 * 119.99896 * 180.02562 * 5 4 3 7 7 O 1.42101 * 106.40229 * 23.51739 * 6 5 4 8 8 O 1.42097 * 106.40267 * 156.43513 * 6 5 4 9 9 N 1.65599 * 107.22008 * 269.97614 * 6 5 4 10 10 C 1.46504 * 120.00015 * 64.99624 * 9 6 5 11 11 H 1.09005 * 109.41271 * 334.86534 * 10 9 6 12 12 C 1.52966 * 109.40917 * 94.65041 * 10 9 6 13 13 C 1.53231 * 109.39981 * 183.70506 * 12 10 9 14 14 C 1.51268 * 108.53890 * 305.37175 * 13 12 10 15 15 C 1.37877 * 120.84767 * 231.37380 * 14 13 12 16 16 N 1.31520 * 119.99434 * 179.97438 * 15 14 13 17 17 Si 1.86797 * 120.00204 * 359.97438 * 15 14 13 18 18 H 1.48494 * 109.47024 * 90.00398 * 17 15 14 19 19 H 1.48500 * 109.47099 * 210.00180 * 17 15 14 20 20 H 1.48497 * 109.47314 * 330.00103 * 17 15 14 21 21 C 1.51263 * 118.29908 * 51.34764 * 14 13 12 22 22 C 1.52959 * 109.41470 * 215.00289 * 10 9 6 23 23 C 1.38205 * 119.99905 * 359.97438 * 5 4 3 24 24 C 1.38208 * 119.99804 * 180.02562 * 2 1 3 25 25 C 1.50697 * 120.00408 * 0.02562 * 24 2 1 26 26 H 1.08999 * 109.46988 * 89.99970 * 1 2 3 27 27 H 1.08990 * 109.47415 * 210.00220 * 1 2 3 28 28 H 1.09006 * 109.46768 * 330.00119 * 1 2 3 29 29 H 1.08000 * 120.00604 * 359.72524 * 3 2 1 30 30 H 1.08002 * 119.99604 * 180.02562 * 4 3 2 31 31 H 0.96999 * 120.00301 * 245.00803 * 9 6 5 32 32 H 1.09001 * 109.47910 * 303.68505 * 12 10 9 33 33 H 1.09001 * 109.48050 * 63.72675 * 12 10 9 34 34 H 1.09002 * 109.62226 * 185.65627 * 13 12 10 35 35 H 1.09004 * 109.78409 * 65.18248 * 13 12 10 36 36 H 0.96998 * 119.99299 * 180.02562 * 16 15 14 37 37 H 1.08999 * 109.62949 * 188.94068 * 21 14 13 38 38 H 1.09000 * 109.78342 * 68.46514 * 21 14 13 39 39 H 1.08998 * 109.48362 * 296.27474 * 22 10 9 40 40 H 1.08997 * 109.48209 * 56.30641 * 22 10 9 41 41 H 1.08000 * 119.99804 * 180.02562 * 23 5 4 42 42 H 1.08997 * 109.47001 * 89.99263 * 25 24 2 43 43 H 1.08997 * 109.47350 * 209.99638 * 25 24 2 44 44 H 1.08998 * 109.46705 * 329.99856 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 16 6.0337 0.0000 0.0018 7 8 6.4346 1.2497 0.5467 8 8 6.4346 -1.2498 0.5465 9 7 6.5252 0.0001 -1.5795 10 6 6.2305 1.1500 -2.4381 11 1 5.3526 1.6715 -2.0565 12 6 7.4264 2.1038 -2.4386 13 6 7.0832 3.3500 -3.2616 14 6 6.6368 2.9093 -4.6381 15 6 7.2011 3.4536 -5.7723 16 7 6.8006 3.0577 -6.9608 17 14 8.5345 4.7530 -5.6207 18 1 9.8647 4.0944 -5.5759 19 1 8.4728 5.6645 -6.7915 20 1 8.3261 5.5331 -4.3745 21 6 5.5558 1.8560 -4.7384 22 6 5.9542 0.6640 -3.8619 23 6 3.5806 -1.1969 0.0004 24 6 2.1980 -1.1969 -0.0005 25 6 1.4446 -2.5020 -0.0017 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8901 0.5139 29 1 1.6583 2.1327 -0.0045 30 1 4.1204 2.1326 0.0010 31 1 7.0080 -0.7612 -1.9375 32 1 7.6581 2.3968 -1.4146 33 1 8.2896 1.6041 -2.8782 34 1 7.9646 3.9854 -3.3485 35 1 6.2795 3.9032 -2.7757 36 1 7.1979 3.4404 -7.7587 37 1 5.4558 1.5315 -5.7741 38 1 4.6078 2.2659 -4.3900 39 1 6.8523 0.1985 -4.2678 40 1 5.1428 -0.0636 -3.8466 41 1 4.1206 -2.1322 0.0008 42 1 1.2632 -2.8159 -1.0296 43 1 2.0335 -3.2620 0.5118 44 1 0.4920 -2.3720 0.5119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259169024.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:00 Heat of formation + Delta-G solvation = -75.455185 kcal Electronic energy + Delta-G solvation = -25883.357325 eV Core-core repulsion = 22312.317869 eV Total energy + Delta-G solvation = -3571.039456 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.72500 -37.60341 -36.91298 -35.65773 -33.77959 -33.64771 -32.39468 -31.26619 -29.65502 -27.97625 -26.89873 -26.79512 -22.50498 -22.10309 -21.60390 -21.48107 -19.67997 -19.04718 -17.57498 -17.20065 -16.32292 -16.02418 -15.56417 -15.39158 -14.57596 -14.51890 -14.42323 -14.24086 -13.38137 -13.26171 -13.07529 -12.94213 -12.90285 -12.54611 -12.41358 -12.32277 -12.21151 -12.17534 -11.94809 -11.90665 -11.82611 -11.41378 -11.22840 -11.13009 -10.87581 -10.73913 -10.55808 -10.19035 -10.00496 -9.75773 -9.23850 -9.16049 -8.94844 -8.88225 -8.49047 -8.46264 -6.12587 -4.03223 0.52424 0.80763 1.18872 3.12382 3.27258 3.36061 3.38453 3.44831 3.93710 4.37626 4.38186 4.54733 4.66582 4.71809 4.93041 5.07844 5.14761 5.22209 5.24179 5.37100 5.40930 5.47551 5.55298 5.58363 5.80562 5.82880 5.90862 5.97037 6.03422 6.06296 6.11349 6.34228 6.49581 6.59932 6.72883 6.75654 6.87011 6.96694 7.04667 7.12734 7.33484 7.42629 7.63660 7.69486 7.79750 8.35296 8.94190 9.52671 10.96898 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016300 B = 0.003934 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.378652 B = 7115.203602 C = 7895.459856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.035 4.035 3 C -0.137 4.137 4 C -0.019 4.019 5 C -0.674 4.674 6 S 2.690 3.310 7 O -0.956 6.956 8 O -0.973 6.973 9 N -1.111 6.111 10 C 0.164 3.836 11 H 0.071 0.929 12 C -0.125 4.125 13 C -0.015 4.015 14 C -0.490 4.490 15 C 0.076 3.924 16 N -0.890 5.890 17 Si 0.888 3.112 18 H -0.278 1.278 19 H -0.291 1.291 20 H -0.266 1.266 21 C 0.012 3.988 22 C -0.112 4.112 23 C -0.016 4.016 24 C -0.113 4.113 25 C -0.117 4.117 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.132 0.868 30 H 0.142 0.858 31 H 0.414 0.586 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.033 0.967 35 H 0.019 0.981 36 H 0.264 0.736 37 H 0.060 0.940 38 H 0.005 0.995 39 H 0.057 0.943 40 H 0.036 0.964 41 H 0.138 0.862 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.585 -8.479 12.552 18.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.036 4.036 3 C -0.156 4.156 4 C -0.038 4.038 5 C -0.760 4.760 6 S 2.780 3.220 7 O -0.946 6.946 8 O -0.963 6.963 9 N -0.871 5.871 10 C 0.059 3.941 11 H 0.089 0.911 12 C -0.165 4.165 13 C -0.053 4.053 14 C -0.509 4.509 15 C -0.126 4.126 16 N -0.528 5.528 17 Si 0.716 3.284 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.191 1.191 21 C -0.026 4.026 22 C -0.152 4.152 23 C -0.035 4.035 24 C -0.114 4.114 25 C -0.173 4.173 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.150 0.850 30 H 0.160 0.840 31 H 0.249 0.751 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.023 0.977 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.155 0.845 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.139 -8.303 13.173 18.581 hybrid contribution 0.286 0.387 -0.574 0.749 sum -9.853 -7.916 12.599 17.846 Atomic orbital electron populations 1.20990 0.90835 1.03261 1.03039 1.20071 0.96268 0.92802 0.94421 1.21163 0.94194 0.97874 1.02363 1.20980 0.94771 0.96761 0.91293 1.31002 1.27486 0.99368 1.18175 1.01912 0.73667 0.73521 0.72893 1.93590 1.80291 1.43974 1.76697 1.93548 1.81607 1.44105 1.77052 1.55700 1.71599 1.29016 1.30773 1.20855 0.97826 0.84052 0.91347 0.91057 1.22099 0.97163 0.97930 0.99282 1.19742 0.96904 0.93106 0.95585 1.20045 1.20106 1.21403 0.89306 1.24841 0.96566 0.96322 0.94899 1.69836 1.42596 1.42817 0.97513 0.86663 0.82277 0.82057 0.77406 1.20392 1.21701 1.19080 1.19360 0.94713 0.91685 0.96881 1.21946 0.99890 0.99669 0.93656 1.20747 0.93902 0.96582 0.92304 1.19846 0.93675 0.95290 1.02584 1.20867 1.00039 0.93717 1.02721 0.90290 0.90753 0.91092 0.85014 0.84041 0.75130 0.93219 0.92407 0.94882 0.96235 0.92593 0.92147 0.97712 0.92392 0.94564 0.84470 0.90825 0.91289 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.60 36.01 0.35 -0.59 16 2 C -0.04 -0.38 5.88 -104.63 -0.62 -1.00 16 3 C -0.14 -1.62 9.70 -39.58 -0.38 -2.00 16 4 C -0.02 -0.26 8.90 -39.58 -0.35 -0.61 16 5 C -0.67 -9.57 5.81 -39.59 -0.23 -9.80 16 6 S 2.69 41.82 5.65 -107.50 -0.61 41.22 16 7 O -0.96 -17.34 16.46 -57.17 -0.94 -18.28 16 8 O -0.97 -16.37 17.28 -57.17 -0.99 -17.36 16 9 N -1.11 -17.05 5.47 -4.92 -0.03 -17.08 16 10 C 0.16 3.00 2.55 -67.97 -0.17 2.83 16 11 H 0.07 1.27 7.22 -51.93 -0.38 0.90 16 12 C -0.13 -2.53 5.54 -26.63 -0.15 -2.68 16 13 C -0.02 -0.35 5.59 -27.49 -0.15 -0.50 16 14 C -0.49 -12.47 5.51 -98.93 -0.55 -13.02 16 15 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 16 N -0.89 -25.00 12.73 55.43 0.71 -24.29 16 17 Si 0.89 20.84 27.27 -169.99 -4.64 16.20 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.08 6.46 56.52 0.37 -5.71 16 21 C 0.01 0.28 5.97 -27.49 -0.16 0.11 16 22 C -0.11 -2.21 5.46 -26.63 -0.15 -2.35 16 23 C -0.02 -0.21 9.18 -39.58 -0.36 -0.57 16 24 C -0.11 -1.27 5.88 -104.63 -0.62 -1.89 16 25 C -0.12 -0.94 9.61 36.00 0.35 -0.59 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.46 5.95 -51.93 -0.31 0.15 16 28 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.14 1.88 7.62 -52.49 -0.40 1.48 16 31 H 0.41 5.51 8.83 -34.47 -0.30 5.20 16 32 H 0.05 0.97 7.55 -51.93 -0.39 0.58 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.03 0.75 4.78 -51.93 -0.25 0.51 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.06 1.58 7.07 -51.93 -0.37 1.21 16 38 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.14 1.58 7.62 -52.49 -0.40 1.18 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 44 H 0.07 0.46 5.95 -51.93 -0.31 0.15 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -31.58 358.31 -10.89 -42.47 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -6.50 Total: 2.44 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: -3.30 Total: -30.71 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.68 Total: -41.37 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -1.93 Total: -35.64 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.64 Total: 16.20 kcal Atomic # 16 Polarization: 41.82 SS G_CDS: -0.61 Total: 41.22 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.58 -10.89 -42.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259169024.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.988 kcal (2) G-P(sol) polarization free energy of solvation -31.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds