Wall clock time and date at job start Tue Mar 31 2020 14:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38255 * 119.99838 * 2 1 4 4 C 1.38220 * 119.99681 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00047 * 0.02867 * 4 3 2 6 6 S 1.76203 * 119.99896 * 180.02562 * 5 4 3 7 7 O 1.42101 * 106.40229 * 23.51739 * 6 5 4 8 8 O 1.42097 * 106.40267 * 156.43513 * 6 5 4 9 9 N 1.65599 * 107.22008 * 269.97614 * 6 5 4 10 10 C 1.46504 * 120.00015 * 64.99624 * 9 6 5 11 11 H 1.09005 * 109.41271 * 334.86534 * 10 9 6 12 12 C 1.52966 * 109.40917 * 94.65041 * 10 9 6 13 13 C 1.53231 * 109.39981 * 183.70506 * 12 10 9 14 14 C 1.51268 * 108.53890 * 305.37175 * 13 12 10 15 15 C 1.37877 * 120.84767 * 231.37380 * 14 13 12 16 16 N 1.31520 * 119.99434 * 179.97438 * 15 14 13 17 17 Si 1.86797 * 120.00204 * 359.97438 * 15 14 13 18 18 H 1.48494 * 109.47024 * 90.00398 * 17 15 14 19 19 H 1.48500 * 109.47099 * 210.00180 * 17 15 14 20 20 H 1.48497 * 109.47314 * 330.00103 * 17 15 14 21 21 C 1.51263 * 118.29908 * 51.34764 * 14 13 12 22 22 C 1.52959 * 109.41470 * 215.00289 * 10 9 6 23 23 C 1.38205 * 119.99905 * 359.97438 * 5 4 3 24 24 C 1.38208 * 119.99804 * 180.02562 * 2 1 3 25 25 C 1.50697 * 120.00408 * 0.02562 * 24 2 1 26 26 H 1.08999 * 109.46988 * 89.99970 * 1 2 3 27 27 H 1.08990 * 109.47415 * 210.00220 * 1 2 3 28 28 H 1.09006 * 109.46768 * 330.00119 * 1 2 3 29 29 H 1.08000 * 120.00604 * 359.72524 * 3 2 1 30 30 H 1.08002 * 119.99604 * 180.02562 * 4 3 2 31 31 H 0.96999 * 120.00301 * 245.00803 * 9 6 5 32 32 H 1.09001 * 109.47910 * 303.68505 * 12 10 9 33 33 H 1.09001 * 109.48050 * 63.72675 * 12 10 9 34 34 H 1.09002 * 109.62226 * 185.65627 * 13 12 10 35 35 H 1.09004 * 109.78409 * 65.18248 * 13 12 10 36 36 H 0.96998 * 119.99299 * 180.02562 * 16 15 14 37 37 H 1.08999 * 109.62949 * 188.94068 * 21 14 13 38 38 H 1.09000 * 109.78342 * 68.46514 * 21 14 13 39 39 H 1.08998 * 109.48362 * 296.27474 * 22 10 9 40 40 H 1.08997 * 109.48209 * 56.30641 * 22 10 9 41 41 H 1.08000 * 119.99804 * 180.02562 * 23 5 4 42 42 H 1.08997 * 109.47001 * 89.99263 * 25 24 2 43 43 H 1.08997 * 109.47350 * 209.99638 * 25 24 2 44 44 H 1.08998 * 109.46705 * 329.99856 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 16 6.0337 0.0000 0.0018 7 8 6.4346 1.2497 0.5467 8 8 6.4346 -1.2498 0.5465 9 7 6.5252 0.0001 -1.5795 10 6 6.2305 1.1500 -2.4381 11 1 5.3526 1.6715 -2.0565 12 6 7.4264 2.1038 -2.4386 13 6 7.0832 3.3500 -3.2616 14 6 6.6368 2.9093 -4.6381 15 6 7.2011 3.4536 -5.7723 16 7 6.8006 3.0577 -6.9608 17 14 8.5345 4.7530 -5.6207 18 1 9.8647 4.0944 -5.5759 19 1 8.4728 5.6645 -6.7915 20 1 8.3261 5.5331 -4.3745 21 6 5.5558 1.8560 -4.7384 22 6 5.9542 0.6640 -3.8619 23 6 3.5806 -1.1969 0.0004 24 6 2.1980 -1.1969 -0.0005 25 6 1.4446 -2.5020 -0.0017 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8901 0.5139 29 1 1.6583 2.1327 -0.0045 30 1 4.1204 2.1326 0.0010 31 1 7.0080 -0.7612 -1.9375 32 1 7.6581 2.3968 -1.4146 33 1 8.2896 1.6041 -2.8782 34 1 7.9646 3.9854 -3.3485 35 1 6.2795 3.9032 -2.7757 36 1 7.1979 3.4404 -7.7587 37 1 5.4558 1.5315 -5.7741 38 1 4.6078 2.2659 -4.3900 39 1 6.8523 0.1985 -4.2678 40 1 5.1428 -0.0636 -3.8466 41 1 4.1206 -2.1322 0.0008 42 1 1.2632 -2.8159 -1.0296 43 1 2.0335 -3.2620 0.5118 44 1 0.4920 -2.3720 0.5119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259169024.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:59 Heat of formation + Delta-G solvation = -95.405266 kcal Electronic energy + Delta-G solvation = -25884.222425 eV Core-core repulsion = 22312.317869 eV Total energy + Delta-G solvation = -3571.904556 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.59290 -39.19135 -38.26670 -36.97984 -35.42130 -34.55094 -33.20942 -33.04950 -31.41359 -28.73121 -28.61792 -27.58633 -23.91612 -23.36585 -23.24813 -22.49457 -21.30563 -20.32224 -18.79570 -18.48044 -17.79816 -17.36855 -16.75641 -16.37424 -16.32834 -15.80461 -15.27058 -15.19033 -15.00340 -14.59946 -14.27363 -14.18942 -14.05947 -13.97690 -13.62625 -13.61672 -13.26551 -13.16802 -13.14246 -13.11102 -13.03939 -12.82040 -12.67846 -12.63383 -12.39413 -12.04930 -11.86744 -11.79109 -11.70222 -11.47719 -10.90760 -10.72915 -10.51436 -10.15855 -10.05054 -9.76315 -8.14787 -6.07826 -0.64448 -0.20165 0.27731 1.39861 1.44275 1.52063 1.96560 2.42593 2.43418 2.75758 3.13807 3.29834 3.74373 3.82355 3.88317 3.91866 4.18039 4.22261 4.22757 4.43431 4.47476 4.51252 4.65560 4.71045 4.77972 4.78474 4.90615 4.91983 4.98143 5.02317 5.07629 5.11612 5.13654 5.18748 5.27019 5.31149 5.32711 5.47298 5.53262 5.62001 5.68462 5.80345 5.85957 5.90684 6.14649 6.38118 6.98511 7.50206 8.95814 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016300 B = 0.003934 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.378652 B = 7115.203602 C = 7895.459856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.036 4.036 3 C -0.144 4.144 4 C -0.041 4.041 5 C -0.685 4.685 6 S 2.706 3.294 7 O -0.985 6.985 8 O -0.987 6.987 9 N -1.105 6.105 10 C 0.174 3.826 11 H 0.077 0.923 12 C -0.124 4.124 13 C -0.019 4.019 14 C -0.497 4.497 15 C 0.025 3.975 16 N -0.929 5.929 17 Si 0.935 3.065 18 H -0.275 1.275 19 H -0.293 1.293 20 H -0.255 1.255 21 C 0.008 3.992 22 C -0.102 4.102 23 C -0.032 4.032 24 C -0.118 4.118 25 C -0.118 4.118 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.153 0.847 30 H 0.137 0.863 31 H 0.424 0.576 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.031 0.969 35 H 0.024 0.976 36 H 0.262 0.738 37 H 0.030 0.970 38 H 0.004 0.996 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.146 0.854 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.107 -9.305 14.061 20.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.036 4.036 3 C -0.163 4.163 4 C -0.061 4.061 5 C -0.774 4.774 6 S 2.799 3.201 7 O -0.975 6.975 8 O -0.977 6.977 9 N -0.865 5.865 10 C 0.067 3.933 11 H 0.095 0.905 12 C -0.164 4.164 13 C -0.058 4.058 14 C -0.516 4.516 15 C -0.173 4.173 16 N -0.569 5.569 17 Si 0.762 3.238 18 H -0.201 1.201 19 H -0.220 1.220 20 H -0.180 1.180 21 C -0.030 4.030 22 C -0.141 4.141 23 C -0.051 4.051 24 C -0.119 4.119 25 C -0.174 4.174 26 H 0.106 0.894 27 H 0.110 0.890 28 H 0.101 0.899 29 H 0.170 0.830 30 H 0.155 0.845 31 H 0.261 0.739 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.023 0.977 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.163 0.837 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.618 -9.140 14.699 20.847 hybrid contribution 0.610 0.598 -0.993 1.310 sum -11.008 -8.542 13.706 19.545 Atomic orbital electron populations 1.21086 0.88201 1.04772 1.03966 1.20534 0.98224 0.92232 0.92632 1.21489 0.93592 0.99436 1.01792 1.21109 0.95910 0.96453 0.92597 1.30639 1.25920 1.00368 1.20473 1.01181 0.74109 0.72491 0.72319 1.93547 1.81485 1.45177 1.77271 1.93523 1.82466 1.44511 1.77203 1.55440 1.72110 1.28592 1.30325 1.20561 0.97258 0.84511 0.90922 0.90455 1.22048 0.97954 0.97258 0.99148 1.19777 0.96950 0.94370 0.94658 1.20625 1.19663 1.20950 0.90350 1.25533 0.98703 0.98260 0.94840 1.69960 1.44315 1.44574 0.98100 0.85887 0.80200 0.80195 0.77521 1.20097 1.21991 1.17955 1.19324 0.94547 0.93090 0.96074 1.21746 1.00395 0.98327 0.93648 1.21003 0.95014 0.96374 0.92725 1.20270 0.93268 0.97006 1.01308 1.20964 1.00626 0.92116 1.03662 0.89413 0.89037 0.89907 0.82974 0.84501 0.73949 0.92365 0.92550 0.95014 0.95748 0.92879 0.95153 0.97714 0.92939 0.92266 0.83672 0.89944 0.90655 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.60 71.24 0.68 -0.72 16 2 C -0.04 -0.68 5.88 -19.87 -0.12 -0.80 16 3 C -0.14 -3.13 9.70 22.27 0.22 -2.91 16 4 C -0.04 -1.09 8.90 22.27 0.20 -0.89 16 5 C -0.68 -18.77 5.81 22.27 0.13 -18.64 16 6 S 2.71 82.10 5.65 -56.49 -0.32 81.78 16 7 O -0.98 -35.33 16.46 -128.00 -2.11 -37.44 16 8 O -0.99 -32.37 17.28 -128.00 -2.21 -34.59 16 9 N -1.10 -32.59 5.47 -169.48 -0.93 -33.51 16 10 C 0.17 6.15 2.55 44.97 0.11 6.26 16 11 H 0.08 2.68 7.22 -2.38 -0.02 2.66 16 12 C -0.12 -4.91 5.54 30.66 0.17 -4.74 16 13 C -0.02 -0.87 5.59 30.11 0.17 -0.70 16 14 C -0.50 -25.36 5.51 -16.17 -0.09 -25.45 16 15 C 0.02 1.34 5.46 84.65 0.46 1.81 16 16 N -0.93 -53.49 12.73 21.45 0.27 -53.21 16 17 Si 0.94 42.90 27.27 68.60 1.87 44.77 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 20 H -0.26 -11.14 6.46 99.48 0.64 -10.50 16 21 C 0.01 0.38 5.97 30.10 0.18 0.56 16 22 C -0.10 -3.92 5.46 30.66 0.17 -3.75 16 23 C -0.03 -0.77 9.18 22.27 0.20 -0.56 16 24 C -0.12 -2.35 5.88 -19.87 -0.12 -2.46 16 25 C -0.12 -1.50 9.61 71.23 0.68 -0.82 16 26 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.09 0.73 5.95 -2.39 -0.01 0.72 16 28 H 0.08 0.76 8.09 -2.38 -0.02 0.75 16 29 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 30 H 0.14 3.61 7.62 -2.91 -0.02 3.59 16 31 H 0.42 10.70 8.83 -96.74 -0.85 9.85 16 32 H 0.06 2.20 7.55 -2.39 -0.02 2.18 16 33 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.03 1.41 4.78 -2.39 -0.01 1.40 16 35 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 37 H 0.03 1.61 7.07 -2.39 -0.02 1.59 16 38 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.15 3.12 7.62 -2.91 -0.02 3.10 16 42 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 44 H 0.09 0.80 5.95 -2.39 -0.01 0.79 16 Total: -1.00 -67.78 358.31 -0.27 -68.05 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.10 Total: 17.96 kcal Atomic # 6 Polarization: -56.87 SS G_CDS: 3.06 Total: -53.81 kcal Atomic # 7 Polarization: -86.07 SS G_CDS: -0.65 Total: -86.73 kcal Atomic # 8 Polarization: -67.71 SS G_CDS: -4.32 Total: -72.03 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.87 Total: 44.77 kcal Atomic # 16 Polarization: 82.10 SS G_CDS: -0.32 Total: 81.78 kcal Total: -67.78 -0.27 -68.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259169024.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.354 kcal (2) G-P(sol) polarization free energy of solvation -67.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds