Wall clock time and date at job start Tue Mar 31 2020 14:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38261 * 120.00105 * 2 1 4 4 C 1.38218 * 119.99724 * 180.02562 * 3 2 1 5 5 C 1.38253 * 119.99925 * 0.02562 * 4 3 2 6 6 S 1.76206 * 119.99604 * 179.97438 * 5 4 3 7 7 O 1.42098 * 106.40075 * 330.24569 * 6 5 4 8 8 O 1.42099 * 106.39811 * 197.32540 * 6 5 4 9 9 N 1.65603 * 107.21863 * 83.78735 * 6 5 4 10 10 C 1.46496 * 120.00018 * 66.64122 * 9 6 5 11 11 C 1.50703 * 110.01888 * 298.85504 * 10 9 6 12 12 H 1.08005 * 119.99618 * 116.57260 * 11 10 9 13 13 C 1.37872 * 120.00211 * 296.58066 * 11 10 9 14 14 N 1.31513 * 119.99906 * 12.79727 * 13 11 10 15 15 Si 1.86798 * 120.00104 * 192.80011 * 13 11 10 16 16 H 1.48497 * 109.47377 * 64.35424 * 15 13 11 17 17 H 1.48497 * 109.47223 * 184.36021 * 15 13 11 18 18 H 1.48505 * 109.47206 * 304.35555 * 15 13 11 19 19 C 1.54265 * 110.03200 * 177.46837 * 10 9 6 20 20 C 1.54969 * 104.15987 * 217.13855 * 19 10 9 21 21 C 1.54883 * 102.77757 * 37.88429 * 20 19 10 22 22 C 1.53876 * 110.03191 * 60.24878 * 10 9 6 23 23 C 1.38211 * 120.00460 * 0.24921 * 5 4 3 24 24 C 1.38211 * 119.99953 * 180.02562 * 2 1 3 25 25 C 1.50704 * 119.99911 * 359.97438 * 24 2 1 26 26 H 1.09001 * 109.47532 * 89.99407 * 1 2 3 27 27 H 1.09002 * 109.46930 * 209.99956 * 1 2 3 28 28 H 1.09004 * 109.46607 * 329.99363 * 1 2 3 29 29 H 1.07997 * 120.00132 * 0.02562 * 3 2 1 30 30 H 1.07999 * 119.99711 * 179.97438 * 4 3 2 31 31 H 0.97003 * 119.99800 * 246.64393 * 9 6 5 32 32 H 0.97005 * 120.00207 * 185.01310 * 14 13 11 33 33 H 1.09007 * 110.48662 * 335.77961 * 19 10 9 34 34 H 1.08999 * 110.48900 * 98.42858 * 19 10 9 35 35 H 1.08995 * 110.71706 * 279.56917 * 20 19 10 36 36 H 1.09000 * 110.92329 * 156.29883 * 20 19 10 37 37 H 1.09003 * 110.48698 * 203.40684 * 21 20 19 38 38 H 1.08998 * 110.48634 * 80.76467 * 21 20 19 39 39 H 1.09001 * 110.02970 * 238.56360 * 22 10 9 40 40 H 1.08995 * 110.02913 * 0.02562 * 22 10 9 41 41 H 1.07994 * 120.00574 * 179.72489 * 23 5 4 42 42 H 1.09011 * 109.47001 * 90.00079 * 25 24 2 43 43 H 1.08997 * 109.47112 * 210.00009 * 25 24 2 44 44 H 1.08994 * 109.47350 * 330.00397 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 16 6.0337 -0.0001 -0.0030 7 8 6.4345 1.1836 -0.6793 8 8 6.4346 -1.3013 -0.4098 9 7 6.5252 0.1704 1.5692 10 6 6.2623 -0.8961 2.5386 11 6 4.7774 -1.1149 2.6748 12 1 4.3427 -2.0614 2.3891 13 6 3.9740 -0.1069 3.1640 14 7 4.4465 1.1154 3.2744 15 14 2.2145 -0.4773 3.6700 16 1 2.2175 -1.4135 4.8227 17 1 1.5351 0.7846 4.0588 18 1 1.4919 -1.0976 2.5305 19 6 6.8697 -0.5272 3.9078 20 6 7.3949 -1.8746 4.4649 21 6 7.9492 -2.5756 3.1999 22 6 6.9479 -2.1981 2.0887 23 6 3.5806 -1.1970 -0.0073 24 6 2.1981 -1.1970 -0.0005 25 6 1.4445 -2.5021 -0.0005 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5140 29 1 1.6584 2.1327 0.0004 30 1 4.1205 2.1326 -0.0010 31 1 6.9871 0.9764 1.8483 32 1 3.9069 1.8088 3.6856 33 1 7.6902 0.1796 3.7832 34 1 6.1052 -0.1137 4.5654 35 1 6.5821 -2.4539 4.9027 36 1 8.1877 -1.7114 5.1949 37 1 7.9723 -3.6561 3.3417 38 1 8.9440 -2.2000 2.9606 39 1 6.2068 -2.9885 1.9697 40 1 7.4766 -2.0363 1.1493 41 1 4.1205 -2.1323 -0.0127 42 1 1.2624 -2.8165 -1.0283 43 1 2.0338 -3.2618 0.5129 44 1 0.4923 -2.3719 0.5136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259170870.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:29 Heat of formation + Delta-G solvation = -62.051204 kcal Electronic energy + Delta-G solvation = -27826.287378 eV Core-core repulsion = 24255.829162 eV Total energy + Delta-G solvation = -3570.458216 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -38.93980 -37.74596 -36.13476 -34.88126 -33.15127 -32.69817 -31.66646 -31.54430 -27.61051 -27.34408 -26.87341 -26.05948 -24.00129 -21.67034 -20.79320 -20.01960 -19.18153 -18.10304 -16.69126 -16.57483 -16.20153 -15.43262 -14.91209 -14.71843 -14.64717 -14.19479 -14.03257 -13.78473 -13.56922 -12.73069 -12.62755 -12.50240 -12.42513 -12.26383 -11.99679 -11.69962 -11.66507 -11.50207 -11.28987 -11.26437 -11.08856 -10.89725 -10.81980 -10.51170 -10.45044 -10.25478 -10.07412 -10.00302 -9.87908 -9.62733 -9.33921 -9.24027 -8.73929 -8.17426 -7.94592 -7.88198 -6.20749 -4.29260 1.51739 1.78437 2.08283 3.24448 3.29054 3.35128 4.03891 4.28887 4.33770 4.84709 5.18085 5.19747 5.22088 5.37765 5.46736 5.63067 5.69296 5.71663 5.78071 5.81311 5.85409 5.93671 5.95337 6.07431 6.22908 6.25706 6.44455 6.46078 6.60228 6.61469 6.68035 6.70059 6.76143 6.88685 6.91259 6.95953 6.99259 7.12166 7.22064 7.28336 7.35585 7.61370 7.62596 7.81057 8.26496 8.48198 8.77158 9.41352 10.81748 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013497 B = 0.007683 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.072566 B = 3643.366921 C = 4434.139450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.048 4.048 3 C -0.151 4.151 4 C -0.005 4.005 5 C -0.616 4.616 6 S 2.696 3.304 7 O -1.002 7.002 8 O -0.981 6.981 9 N -1.073 6.073 10 C 0.299 3.701 11 C -0.535 4.535 12 H 0.065 0.935 13 C 0.101 3.899 14 N -0.850 5.850 15 Si 0.857 3.143 16 H -0.283 1.283 17 H -0.292 1.292 18 H -0.251 1.251 19 C -0.093 4.093 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.143 4.143 23 C 0.017 3.983 24 C -0.117 4.117 25 C -0.110 4.110 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.399 0.601 32 H 0.262 0.738 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.045 0.955 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.131 0.869 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.053 -2.475 -2.472 4.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.049 4.049 3 C -0.170 4.170 4 C -0.025 4.025 5 C -0.703 4.703 6 S 2.788 3.212 7 O -0.992 6.992 8 O -0.972 6.972 9 N -0.831 5.831 10 C 0.214 3.786 11 C -0.574 4.574 12 H 0.083 0.917 13 C -0.107 4.107 14 N -0.485 5.485 15 Si 0.684 3.316 16 H -0.209 1.209 17 H -0.218 1.218 18 H -0.175 1.175 19 C -0.133 4.133 20 C -0.159 4.159 21 C -0.158 4.158 22 C -0.182 4.182 23 C -0.003 4.003 24 C -0.118 4.118 25 C -0.167 4.167 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.132 0.868 30 H 0.142 0.858 31 H 0.232 0.768 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.149 0.851 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.674 -2.507 -3.309 4.938 hybrid contribution -1.715 0.467 1.187 2.138 sum -4.390 -2.041 -2.122 5.285 Atomic orbital electron populations 1.20900 0.92236 1.02592 1.01815 1.19736 0.95159 0.93124 0.96846 1.20830 0.94407 0.96827 1.04890 1.20511 0.94017 0.96309 0.91636 1.30591 1.27032 0.98612 1.14111 1.01354 0.73839 0.72636 0.73336 1.93474 1.82320 1.49337 1.74104 1.93473 1.81000 1.40373 1.82316 1.55834 1.71639 1.28829 1.26843 1.18410 0.93596 0.81479 0.85098 1.21492 0.90977 0.99569 1.45383 0.91736 1.24751 0.97384 0.94374 0.94191 1.70027 1.37975 1.00457 1.40018 0.87183 0.86525 0.77901 0.79984 1.20883 1.21761 1.17516 1.22363 0.98466 0.94462 0.98042 1.22443 0.98979 0.98124 0.96352 1.22308 0.98428 0.98647 0.96462 1.22967 0.98024 0.99013 0.98156 1.20502 0.93094 0.96686 0.89997 1.19566 0.93906 0.94392 1.03970 1.20784 0.99870 0.94669 1.01343 0.91326 0.91329 0.91988 0.86780 0.85843 0.76774 0.92805 0.94245 0.90407 0.91882 0.93607 0.93302 0.93049 0.91999 0.90552 0.85099 0.91958 0.91588 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 9.60 36.01 0.35 -1.30 16 2 C -0.05 -0.84 5.30 -104.62 -0.55 -1.40 16 3 C -0.15 -2.75 9.70 -39.58 -0.38 -3.13 16 4 C -0.01 -0.11 9.52 -39.58 -0.38 -0.48 16 5 C -0.62 -12.84 4.05 -39.59 -0.16 -13.00 16 6 S 2.70 57.91 5.63 -107.50 -0.61 57.30 16 7 O -1.00 -23.11 17.45 -57.17 -1.00 -24.11 16 8 O -0.98 -21.95 13.89 -57.17 -0.79 -22.74 16 9 N -1.07 -22.62 4.74 0.51 0.00 -22.61 16 10 C 0.30 6.36 0.61 -131.85 -0.08 6.28 16 11 C -0.53 -12.17 4.94 -34.44 -0.17 -12.34 16 12 H 0.06 1.51 6.89 -52.48 -0.36 1.15 16 13 C 0.10 2.35 4.11 -17.82 -0.07 2.27 16 14 N -0.85 -20.16 11.68 55.43 0.65 -19.52 16 15 Si 0.86 19.05 29.22 -169.99 -4.97 14.08 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.25 -5.32 5.57 56.52 0.31 -5.00 16 19 C -0.09 -1.89 5.60 -25.03 -0.14 -2.03 16 20 C -0.12 -2.15 6.91 -24.70 -0.17 -2.32 16 21 C -0.12 -2.11 6.83 -25.07 -0.17 -2.28 16 22 C -0.14 -2.88 5.30 -25.61 -0.14 -3.01 16 23 C 0.02 0.33 7.08 -39.58 -0.28 0.05 16 24 C -0.12 -2.12 4.67 -104.62 -0.49 -2.61 16 25 C -0.11 -1.63 9.59 36.01 0.35 -1.29 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.91 5.95 -51.93 -0.31 0.60 16 28 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 29 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 30 H 0.12 2.43 7.77 -52.49 -0.41 2.03 16 31 H 0.40 8.08 8.41 -34.47 -0.29 7.79 16 32 H 0.26 6.24 8.32 -40.82 -0.34 5.90 16 33 H 0.04 0.76 7.78 -51.93 -0.40 0.36 16 34 H 0.08 1.74 6.55 -51.93 -0.34 1.40 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.06 1.27 7.37 -51.93 -0.38 0.89 16 40 H 0.08 1.60 5.65 -51.93 -0.29 1.31 16 41 H 0.13 2.55 7.49 -52.49 -0.39 2.16 16 42 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 43 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 44 H 0.06 0.87 5.95 -51.93 -0.31 0.56 16 LS Contribution 347.42 15.07 5.24 5.24 Total: -1.00 -26.87 347.42 -10.49 -37.35 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -6.51 Total: 11.61 kcal Atomic # 6 Polarization: -34.11 SS G_CDS: -2.50 Total: -36.60 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.65 Total: -42.13 kcal Atomic # 8 Polarization: -45.05 SS G_CDS: -1.79 Total: -46.85 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.97 Total: 14.08 kcal Atomic # 16 Polarization: 57.91 SS G_CDS: -0.61 Total: 57.30 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -26.87 -10.49 -37.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259170870.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.697 kcal (2) G-P(sol) polarization free energy of solvation -26.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds