Wall clock time and date at job start Tue Mar 31 2020 14:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38261 * 120.00105 * 2 1 4 4 C 1.38218 * 119.99724 * 180.02562 * 3 2 1 5 5 C 1.38253 * 119.99925 * 0.02562 * 4 3 2 6 6 S 1.76206 * 119.99604 * 179.97438 * 5 4 3 7 7 O 1.42098 * 106.40075 * 330.24569 * 6 5 4 8 8 O 1.42099 * 106.39811 * 197.32540 * 6 5 4 9 9 N 1.65603 * 107.21863 * 83.78735 * 6 5 4 10 10 C 1.46496 * 120.00018 * 66.64122 * 9 6 5 11 11 C 1.50703 * 110.01888 * 298.85504 * 10 9 6 12 12 H 1.08005 * 119.99618 * 116.57260 * 11 10 9 13 13 C 1.37872 * 120.00211 * 296.58066 * 11 10 9 14 14 N 1.31513 * 119.99906 * 12.79727 * 13 11 10 15 15 Si 1.86798 * 120.00104 * 192.80011 * 13 11 10 16 16 H 1.48497 * 109.47377 * 64.35424 * 15 13 11 17 17 H 1.48497 * 109.47223 * 184.36021 * 15 13 11 18 18 H 1.48505 * 109.47206 * 304.35555 * 15 13 11 19 19 C 1.54265 * 110.03200 * 177.46837 * 10 9 6 20 20 C 1.54969 * 104.15987 * 217.13855 * 19 10 9 21 21 C 1.54883 * 102.77757 * 37.88429 * 20 19 10 22 22 C 1.53876 * 110.03191 * 60.24878 * 10 9 6 23 23 C 1.38211 * 120.00460 * 0.24921 * 5 4 3 24 24 C 1.38211 * 119.99953 * 180.02562 * 2 1 3 25 25 C 1.50704 * 119.99911 * 359.97438 * 24 2 1 26 26 H 1.09001 * 109.47532 * 89.99407 * 1 2 3 27 27 H 1.09002 * 109.46930 * 209.99956 * 1 2 3 28 28 H 1.09004 * 109.46607 * 329.99363 * 1 2 3 29 29 H 1.07997 * 120.00132 * 0.02562 * 3 2 1 30 30 H 1.07999 * 119.99711 * 179.97438 * 4 3 2 31 31 H 0.97003 * 119.99800 * 246.64393 * 9 6 5 32 32 H 0.97005 * 120.00207 * 185.01310 * 14 13 11 33 33 H 1.09007 * 110.48662 * 335.77961 * 19 10 9 34 34 H 1.08999 * 110.48900 * 98.42858 * 19 10 9 35 35 H 1.08995 * 110.71706 * 279.56917 * 20 19 10 36 36 H 1.09000 * 110.92329 * 156.29883 * 20 19 10 37 37 H 1.09003 * 110.48698 * 203.40684 * 21 20 19 38 38 H 1.08998 * 110.48634 * 80.76467 * 21 20 19 39 39 H 1.09001 * 110.02970 * 238.56360 * 22 10 9 40 40 H 1.08995 * 110.02913 * 0.02562 * 22 10 9 41 41 H 1.07994 * 120.00574 * 179.72489 * 23 5 4 42 42 H 1.09011 * 109.47001 * 90.00079 * 25 24 2 43 43 H 1.08997 * 109.47112 * 210.00009 * 25 24 2 44 44 H 1.08994 * 109.47350 * 330.00397 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 16 6.0337 -0.0001 -0.0030 7 8 6.4345 1.1836 -0.6793 8 8 6.4346 -1.3013 -0.4098 9 7 6.5252 0.1704 1.5692 10 6 6.2623 -0.8961 2.5386 11 6 4.7774 -1.1149 2.6748 12 1 4.3427 -2.0614 2.3891 13 6 3.9740 -0.1069 3.1640 14 7 4.4465 1.1154 3.2744 15 14 2.2145 -0.4773 3.6700 16 1 2.2175 -1.4135 4.8227 17 1 1.5351 0.7846 4.0588 18 1 1.4919 -1.0976 2.5305 19 6 6.8697 -0.5272 3.9078 20 6 7.3949 -1.8746 4.4649 21 6 7.9492 -2.5756 3.1999 22 6 6.9479 -2.1981 2.0887 23 6 3.5806 -1.1970 -0.0073 24 6 2.1981 -1.1970 -0.0005 25 6 1.4445 -2.5021 -0.0005 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5140 29 1 1.6584 2.1327 0.0004 30 1 4.1205 2.1326 -0.0010 31 1 6.9871 0.9764 1.8483 32 1 3.9069 1.8088 3.6856 33 1 7.6902 0.1796 3.7832 34 1 6.1052 -0.1137 4.5654 35 1 6.5821 -2.4539 4.9027 36 1 8.1877 -1.7114 5.1949 37 1 7.9723 -3.6561 3.3417 38 1 8.9440 -2.2000 2.9606 39 1 6.2068 -2.9885 1.9697 40 1 7.4766 -2.0363 1.1493 41 1 4.1205 -2.1323 -0.0127 42 1 1.2624 -2.8165 -1.0283 43 1 2.0338 -3.2618 0.5129 44 1 0.4923 -2.3719 0.5136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259170870.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:28 Heat of formation + Delta-G solvation = -76.997513 kcal Electronic energy + Delta-G solvation = -27826.935498 eV Core-core repulsion = 24255.829162 eV Total energy + Delta-G solvation = -3571.106336 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.35654 -39.36223 -37.89265 -36.65261 -34.69976 -34.18693 -33.30338 -32.98175 -29.17915 -28.77975 -28.40922 -27.37033 -25.69230 -23.08192 -22.25019 -21.52387 -20.85179 -19.75134 -18.40284 -18.19410 -17.90052 -16.94895 -16.59940 -16.29456 -16.11790 -15.77309 -15.53123 -15.20123 -15.01163 -14.41044 -14.05774 -13.96905 -13.65481 -13.61464 -13.51642 -13.31513 -13.04911 -13.02227 -12.91907 -12.85987 -12.57686 -12.55108 -12.54728 -12.21461 -11.94117 -11.84462 -11.61484 -11.55383 -11.42718 -11.17515 -10.96845 -10.92581 -10.43398 -9.71207 -9.55874 -9.39434 -8.01036 -6.10486 -0.09215 0.23142 0.61293 1.45214 1.49081 1.54202 2.43821 2.53387 2.73973 3.15800 3.41769 3.68280 3.96328 3.99093 4.11913 4.18719 4.27148 4.33979 4.40698 4.48119 4.59839 4.70182 4.81824 4.86914 4.93003 4.98221 4.99916 5.01773 5.09977 5.14570 5.25412 5.26511 5.33601 5.38489 5.40394 5.45486 5.49305 5.61999 5.66298 5.72817 5.75884 5.83171 6.09402 6.19764 6.52619 6.80283 6.96958 7.60421 8.99923 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013497 B = 0.007683 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.072566 B = 3643.366921 C = 4434.139450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.051 4.051 3 C -0.156 4.156 4 C -0.023 4.023 5 C -0.630 4.630 6 S 2.702 3.298 7 O -1.023 7.023 8 O -0.994 6.994 9 N -1.073 6.073 10 C 0.292 3.708 11 C -0.533 4.533 12 H 0.055 0.945 13 C 0.084 3.916 14 N -0.862 5.862 15 Si 0.881 3.119 16 H -0.293 1.293 17 H -0.303 1.303 18 H -0.234 1.234 19 C -0.092 4.092 20 C -0.114 4.114 21 C -0.115 4.115 22 C -0.144 4.144 23 C 0.001 3.999 24 C -0.124 4.124 25 C -0.111 4.111 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.137 0.863 30 H 0.117 0.883 31 H 0.401 0.599 32 H 0.256 0.744 33 H 0.044 0.956 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.126 0.874 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.274 -3.341 -2.393 5.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.051 4.051 3 C -0.175 4.175 4 C -0.043 4.043 5 C -0.719 4.719 6 S 2.797 3.203 7 O -1.013 7.013 8 O -0.985 6.985 9 N -0.831 5.831 10 C 0.207 3.793 11 C -0.572 4.572 12 H 0.073 0.927 13 C -0.122 4.122 14 N -0.497 5.497 15 Si 0.709 3.291 16 H -0.220 1.220 17 H -0.230 1.230 18 H -0.157 1.157 19 C -0.133 4.133 20 C -0.152 4.152 21 C -0.153 4.153 22 C -0.183 4.183 23 C -0.018 4.018 24 C -0.125 4.125 25 C -0.168 4.168 26 H 0.112 0.888 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.155 0.845 30 H 0.135 0.865 31 H 0.235 0.765 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.143 0.857 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.875 -3.386 -3.237 6.079 hybrid contribution -1.386 0.737 1.129 1.933 sum -5.261 -2.649 -2.108 6.256 Atomic orbital electron populations 1.20998 0.89246 1.03502 1.03747 1.20217 0.97383 0.92419 0.95080 1.21152 0.93763 0.98434 1.04152 1.20601 0.95164 0.95799 0.92731 1.30345 1.26082 0.99484 1.16027 1.00945 0.74286 0.71924 0.73158 1.93436 1.83102 1.50102 1.74688 1.93447 1.81677 1.40747 1.82607 1.55693 1.71834 1.28990 1.26628 1.18529 0.93122 0.81991 0.85644 1.21518 0.91837 0.98944 1.44922 0.92691 1.24970 0.98510 0.94346 0.94413 1.70083 1.38208 1.00635 1.40819 0.86809 0.85467 0.76982 0.79880 1.21982 1.22964 1.15691 1.22299 0.97949 0.96003 0.97025 1.22400 0.99522 0.96358 0.96947 1.22292 0.98094 0.99952 0.94920 1.22926 0.98394 0.98189 0.98807 1.20583 0.94231 0.96044 0.90988 1.19981 0.93403 0.96282 1.02790 1.20875 0.99926 0.92835 1.03122 0.88754 0.90420 0.91097 0.84530 0.86527 0.76535 0.93414 0.93702 0.92775 0.92398 0.91085 0.91344 0.91757 0.92890 0.91609 0.85656 0.89561 0.91825 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.83 9.60 71.24 0.68 -2.14 16 2 C -0.05 -1.65 5.30 -19.86 -0.11 -1.75 16 3 C -0.16 -5.47 9.70 22.27 0.22 -5.25 16 4 C -0.02 -0.94 9.52 22.27 0.21 -0.73 16 5 C -0.63 -26.43 4.05 22.27 0.09 -26.33 16 6 S 2.70 118.33 5.63 -56.49 -0.32 118.01 16 7 O -1.02 -48.25 17.45 -128.00 -2.23 -50.49 16 8 O -0.99 -45.26 13.89 -128.00 -1.78 -47.04 16 9 N -1.07 -45.81 4.74 -152.30 -0.72 -46.53 16 10 C 0.29 12.42 0.61 3.58 0.00 12.42 16 11 C -0.53 -24.28 4.94 25.60 0.13 -24.15 16 12 H 0.05 2.58 6.89 -2.91 -0.02 2.56 16 13 C 0.08 3.89 4.11 84.65 0.35 4.24 16 14 N -0.86 -41.18 11.68 21.45 0.25 -40.93 16 15 Si 0.88 38.18 29.22 68.60 2.00 40.18 16 16 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 17 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 18 H -0.23 -9.34 5.57 99.48 0.55 -8.79 16 19 C -0.09 -3.70 5.60 31.70 0.18 -3.52 16 20 C -0.11 -3.86 6.91 31.91 0.22 -3.63 16 21 C -0.11 -3.79 6.83 31.67 0.22 -3.57 16 22 C -0.14 -5.75 5.30 31.32 0.17 -5.58 16 23 C 0.00 0.04 7.08 22.27 0.16 0.20 16 24 C -0.12 -4.24 4.67 -19.86 -0.09 -4.33 16 25 C -0.11 -2.99 9.59 71.24 0.68 -2.30 16 26 H 0.09 1.80 8.14 -2.39 -0.02 1.79 16 27 H 0.08 1.73 5.95 -2.39 -0.01 1.71 16 28 H 0.07 1.58 8.09 -2.38 -0.02 1.56 16 29 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 30 H 0.12 4.71 7.77 -2.91 -0.02 4.69 16 31 H 0.40 16.55 8.41 -96.74 -0.81 15.74 16 32 H 0.26 12.32 8.32 -92.70 -0.77 11.54 16 33 H 0.04 1.71 7.78 -2.38 -0.02 1.69 16 34 H 0.05 2.42 6.55 -2.39 -0.02 2.40 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.05 2.16 7.37 -2.39 -0.02 2.15 16 40 H 0.07 2.75 5.65 -2.39 -0.01 2.74 16 41 H 0.13 4.95 7.49 -2.91 -0.02 4.93 16 42 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 43 H 0.06 1.73 8.09 -2.39 -0.02 1.72 16 44 H 0.08 1.85 5.95 -2.39 -0.01 1.84 16 Total: -1.00 -56.87 347.42 0.35 -56.52 By element: Atomic # 1 Polarization: 36.69 SS G_CDS: 0.05 Total: 36.73 kcal Atomic # 6 Polarization: -69.56 SS G_CDS: 3.10 Total: -66.45 kcal Atomic # 7 Polarization: -87.00 SS G_CDS: -0.47 Total: -87.47 kcal Atomic # 8 Polarization: -93.51 SS G_CDS: -4.01 Total: -97.53 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.00 Total: 40.18 kcal Atomic # 16 Polarization: 118.33 SS G_CDS: -0.32 Total: 118.01 kcal Total: -56.87 0.35 -56.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259170870.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.475 kcal (2) G-P(sol) polarization free energy of solvation -56.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds