Wall clock time and date at job start Tue Mar 31 2020 14:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38238 * 119.99587 * 2 1 4 4 C 1.38239 * 119.99661 * 179.97438 * 3 2 1 5 5 C 1.38240 * 119.99945 * 0.02718 * 4 3 2 6 6 C 1.50702 * 119.99768 * 179.97438 * 5 4 3 7 7 S 1.81397 * 109.47314 * 89.99524 * 6 5 4 8 8 O 1.42103 * 110.54223 * 68.37625 * 7 6 5 9 9 O 1.42099 * 110.54380 * 291.62396 * 7 6 5 10 10 N 1.65606 * 104.44640 * 179.97438 * 7 6 5 11 11 C 1.46502 * 119.99828 * 65.00526 * 10 7 6 12 12 H 1.09007 * 109.41108 * 334.85283 * 11 10 7 13 13 C 1.52954 * 109.35874 * 94.67769 * 11 10 7 14 14 C 1.53236 * 109.40515 * 183.66763 * 13 11 10 15 15 C 1.51262 * 108.53353 * 305.37271 * 14 13 11 16 16 C 1.37881 * 120.84915 * 231.06965 * 15 14 13 17 17 N 1.31522 * 119.99814 * 180.28675 * 16 15 14 18 18 Si 1.86793 * 119.99811 * 0.28519 * 16 15 14 19 19 H 1.48500 * 109.46962 * 90.00169 * 18 16 15 20 20 H 1.48496 * 109.47036 * 209.99668 * 18 16 15 21 21 H 1.48500 * 109.47511 * 329.99774 * 18 16 15 22 22 C 1.51276 * 118.30200 * 51.34942 * 15 14 13 23 23 C 1.52962 * 109.41006 * 214.99672 * 11 10 7 24 24 C 1.38229 * 120.00020 * 0.24724 * 5 4 3 25 25 C 1.38232 * 120.00118 * 180.02562 * 2 1 3 26 26 H 1.09005 * 109.46921 * 89.99943 * 1 2 3 27 27 H 1.09006 * 109.47591 * 209.99694 * 1 2 3 28 28 H 1.08999 * 109.47868 * 330.00285 * 1 2 3 29 29 H 1.07995 * 120.00216 * 0.02562 * 3 2 1 30 30 H 1.07999 * 120.00083 * 179.97438 * 4 3 2 31 31 H 1.08998 * 109.46933 * 329.99188 * 6 5 4 32 32 H 1.08999 * 109.46479 * 209.99949 * 6 5 4 33 33 H 0.96997 * 120.00167 * 244.99510 * 10 7 6 34 34 H 1.09002 * 109.48049 * 303.64810 * 13 11 10 35 35 H 1.09001 * 109.48386 * 63.68708 * 13 11 10 36 36 H 1.08996 * 109.62251 * 185.65921 * 14 13 11 37 37 H 1.08994 * 109.62293 * 65.08620 * 14 13 11 38 38 H 0.96997 * 119.99564 * 180.02562 * 17 16 15 39 39 H 1.08997 * 109.62461 * 68.36402 * 22 15 14 40 40 H 1.09006 * 109.62424 * 188.93385 * 22 15 14 41 41 H 1.09003 * 109.48320 * 56.38799 * 23 11 10 42 42 H 1.08997 * 109.49150 * 296.35173 * 23 11 10 43 43 H 1.08002 * 120.00037 * 179.72835 * 24 5 4 44 44 H 1.07999 * 120.00382 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 0.0001 0.0005 6 6 5.7787 0.0001 0.0005 7 16 6.3834 0.0002 1.7107 8 8 6.0874 -1.2368 2.3444 9 8 6.0873 1.2372 2.3442 10 7 8.0331 -0.0004 1.5656 11 6 8.7162 1.1491 0.9671 12 1 8.0304 1.6708 0.2994 13 6 9.1707 2.1016 2.0743 14 6 9.8037 3.3476 1.4459 15 6 10.9079 2.9065 0.5109 16 6 12.1703 3.4537 0.5998 17 7 13.1165 3.0618 -0.2254 18 14 12.5367 4.7516 1.8923 19 1 13.0054 4.0918 3.1374 20 1 13.5927 5.6666 1.3894 21 1 11.3035 5.5282 2.1775 22 6 10.5900 1.8542 -0.5284 23 6 9.9286 0.6624 0.1717 24 6 3.5805 -1.1970 -0.0052 25 6 2.1981 -1.1971 -0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3635 0.8900 0.5138 29 1 1.6580 2.1325 0.0004 30 1 4.1204 2.1325 0.0001 31 1 6.1419 0.8901 -0.5134 32 1 6.1419 -0.8899 -0.5134 33 1 8.5470 -0.7618 1.8770 34 1 8.3112 2.3950 2.6769 35 1 9.9041 1.6007 2.7063 36 1 10.2187 3.9819 2.2291 37 1 9.0484 3.8991 0.8861 38 1 14.0047 3.4465 -0.1626 39 1 9.9075 2.2675 -1.2710 40 1 11.5104 1.5291 -1.0136 41 1 9.6062 -0.0641 -0.5743 42 1 10.6441 0.1954 0.8485 43 1 4.1205 -2.1324 -0.0097 44 1 1.6582 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259267640.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:19 Heat of formation + Delta-G solvation = -93.678293 kcal Electronic energy + Delta-G solvation = -25287.179352 eV Core-core repulsion = 21715.349682 eV Total energy + Delta-G solvation = -3571.829669 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.43167 -39.16650 -38.11203 -37.01974 -35.39854 -35.01351 -33.03515 -31.93039 -31.39384 -30.52725 -28.60096 -26.17031 -23.89773 -23.75032 -23.23818 -22.01856 -21.25721 -20.32754 -18.83071 -17.95959 -17.68897 -17.29192 -16.74295 -16.54445 -16.36921 -16.03674 -15.89705 -14.99821 -14.66254 -14.57508 -14.40147 -14.25457 -14.04819 -14.01222 -13.96815 -13.80706 -13.26733 -13.22023 -13.12425 -13.04384 -12.90589 -12.81535 -12.65876 -12.39078 -12.26658 -11.93213 -11.92247 -11.85263 -11.76930 -11.49228 -10.88648 -10.71508 -10.51369 -10.11620 -9.94358 -9.47513 -8.15100 -6.07474 -0.87204 0.32964 0.39284 1.38352 1.43163 1.50628 1.74877 2.42665 2.64620 2.80943 3.13265 3.18742 3.38143 3.74328 3.90837 4.01987 4.06302 4.07374 4.23651 4.39708 4.47550 4.48411 4.53181 4.54697 4.79957 4.81124 4.84967 4.90332 5.00611 5.03642 5.10064 5.13911 5.24734 5.29030 5.32498 5.38531 5.46552 5.49470 5.62128 5.62962 5.70101 5.82264 5.88748 6.00181 6.16854 6.38669 6.99697 7.50375 8.95272 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.024905 B = 0.002968 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.010734 B = 9431.667661 C = 9625.959988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.130 4.130 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.568 4.568 7 S 2.609 3.391 8 O -0.988 6.988 9 O -0.985 6.985 10 N -1.110 6.110 11 C 0.169 3.831 12 H 0.087 0.913 13 C -0.125 4.125 14 C -0.020 4.020 15 C -0.497 4.497 16 C 0.024 3.976 17 N -0.929 5.929 18 Si 0.933 3.067 19 H -0.277 1.277 20 H -0.293 1.293 21 H -0.256 1.256 22 C 0.005 3.995 23 C -0.104 4.104 24 C -0.116 4.116 25 C -0.128 4.128 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.146 0.854 30 H 0.135 0.865 31 H 0.158 0.842 32 H 0.170 0.830 33 H 0.421 0.579 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.028 0.972 37 H 0.026 0.974 38 H 0.262 0.738 39 H 0.011 0.989 40 H 0.030 0.970 41 H 0.070 0.930 42 H 0.047 0.953 43 H 0.143 0.857 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.362 -8.469 -1.746 23.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.148 4.148 4 C -0.139 4.139 5 C -0.121 4.121 6 C -0.698 4.698 7 S 2.706 3.294 8 O -0.978 6.978 9 O -0.975 6.975 10 N -0.868 5.868 11 C 0.063 3.937 12 H 0.105 0.895 13 C -0.165 4.165 14 C -0.058 4.058 15 C -0.516 4.516 16 C -0.175 4.175 17 N -0.569 5.569 18 Si 0.760 3.240 19 H -0.203 1.203 20 H -0.220 1.220 21 H -0.180 1.180 22 C -0.034 4.034 23 C -0.144 4.144 24 C -0.135 4.135 25 C -0.146 4.146 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.164 0.836 30 H 0.153 0.847 31 H 0.176 0.824 32 H 0.188 0.812 33 H 0.256 0.744 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.029 0.971 40 H 0.049 0.951 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.160 0.840 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -22.727 -8.293 -0.999 24.214 hybrid contribution 1.474 0.533 0.044 1.568 sum -21.253 -7.760 -0.955 22.646 Atomic orbital electron populations 1.20886 0.88794 1.03969 1.03479 1.20458 0.98017 0.92897 0.97214 1.21386 0.93599 0.99187 1.00603 1.21465 0.95603 0.97891 0.98903 1.19144 0.91844 0.95003 1.06128 1.29481 1.01431 1.14911 1.23970 1.04934 0.73058 0.73219 0.78187 1.93528 1.83882 1.45965 1.74469 1.93554 1.84007 1.46562 1.73420 1.55563 1.25077 1.28258 1.77934 1.20625 0.94762 0.84645 0.93706 0.89510 1.22041 0.99279 0.97386 0.97764 1.19789 0.96004 0.94408 0.95613 1.20676 0.94368 1.20934 1.15636 1.25522 0.96097 0.98283 0.97553 1.69952 1.03222 1.44613 1.39126 0.85924 0.77831 0.80305 0.79953 1.20330 1.21963 1.18000 1.19370 0.96123 0.93059 0.94800 1.21783 0.95605 0.98417 0.98558 1.21470 0.95502 0.97762 0.98771 1.21408 0.93651 0.99093 1.00455 0.89784 0.90295 0.90571 0.83621 0.84730 0.82442 0.81243 0.74353 0.92650 0.93172 0.95337 0.95540 0.92917 0.97060 0.95103 0.91143 0.93377 0.83958 0.83173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.01 71.23 0.71 -0.45 16 2 C -0.09 -1.42 5.88 -19.87 -0.12 -1.54 16 3 C -0.13 -2.42 9.70 22.27 0.22 -2.20 16 4 C -0.12 -2.62 9.70 22.27 0.22 -2.41 16 5 C -0.12 -2.65 5.14 -19.87 -0.10 -2.75 16 6 C -0.57 -11.52 6.09 71.24 0.43 -11.09 16 7 S 2.61 72.87 5.36 -56.49 -0.30 72.57 16 8 O -0.99 -31.71 18.08 -127.65 -2.31 -34.02 16 9 O -0.99 -34.60 17.02 -127.65 -2.17 -36.77 16 10 N -1.11 -30.87 5.35 -169.49 -0.91 -31.78 16 11 C 0.17 5.65 2.45 44.96 0.11 5.76 16 12 H 0.09 2.63 7.15 -2.38 -0.02 2.61 16 13 C -0.13 -4.93 5.53 30.66 0.17 -4.76 16 14 C -0.02 -0.89 5.59 30.11 0.17 -0.72 16 15 C -0.50 -25.14 5.51 -16.17 -0.09 -25.23 16 16 C 0.02 1.27 5.46 84.65 0.46 1.74 16 17 N -0.93 -53.32 12.73 21.45 0.27 -53.05 16 18 Si 0.93 43.11 27.27 68.60 1.87 44.98 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 21 H -0.26 -11.25 6.46 99.48 0.64 -10.61 16 22 C 0.00 0.22 5.97 30.11 0.18 0.40 16 23 C -0.10 -3.79 5.46 30.66 0.17 -3.63 16 24 C -0.12 -2.33 9.70 22.27 0.22 -2.11 16 25 C -0.13 -2.21 9.70 22.27 0.22 -1.99 16 26 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.08 0.64 8.09 -2.38 -0.02 0.62 16 28 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 29 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 30 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 31 H 0.16 2.78 7.38 -2.39 -0.02 2.76 16 32 H 0.17 2.47 8.08 -2.39 -0.02 2.45 16 33 H 0.42 10.42 8.80 -96.74 -0.85 9.57 16 34 H 0.05 2.13 7.33 -2.39 -0.02 2.12 16 35 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 36 H 0.03 1.28 4.78 -2.39 -0.01 1.26 16 37 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 39 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.03 1.60 7.07 -2.38 -0.02 1.58 16 41 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 44 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -69.78 364.55 -0.50 -70.28 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.09 Total: 18.77 kcal Atomic # 6 Polarization: -53.94 SS G_CDS: 2.96 Total: -50.98 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -0.63 Total: -84.82 kcal Atomic # 8 Polarization: -66.31 SS G_CDS: -4.48 Total: -70.79 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.87 Total: 44.98 kcal Atomic # 16 Polarization: 72.87 SS G_CDS: -0.30 Total: 72.57 kcal Total: -69.78 -0.50 -70.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259267640.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.398 kcal (2) G-P(sol) polarization free energy of solvation -69.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds