Wall clock time and date at job start Tue Mar 31 2020 14:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38237 * 119.99863 * 2 1 4 4 C 1.38241 * 119.99960 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99960 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99760 * 359.97438 * 4 3 2 7 7 C 1.38233 * 120.00108 * 359.97215 * 6 4 3 8 8 S 1.76202 * 119.99731 * 180.02562 * 7 6 4 9 9 O 1.42097 * 106.40711 * 336.46010 * 8 7 6 10 10 O 1.42106 * 106.40116 * 203.54096 * 8 7 6 11 11 N 1.65596 * 107.21724 * 90.00550 * 8 7 6 12 12 C 1.46931 * 120.62944 * 270.01745 * 11 8 7 13 13 C 1.53191 * 108.76527 * 126.35988 * 12 11 8 14 14 C 1.53046 * 109.30997 * 54.65907 * 13 12 11 15 15 C 1.53039 * 109.52798 * 298.61471 * 14 13 12 16 16 H 1.09000 * 109.49863 * 301.42271 * 15 14 13 17 17 C 1.50698 * 109.50055 * 181.35641 * 15 14 13 18 18 H 1.07997 * 119.99643 * 239.99946 * 17 15 14 19 19 C 1.37875 * 119.99934 * 59.99821 * 17 15 14 20 20 N 1.31517 * 120.00258 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 120.00135 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47014 * 59.99679 * 21 19 17 23 23 H 1.48495 * 109.47254 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47093 * 300.00079 * 21 19 17 25 25 C 1.46919 * 120.63444 * 89.99912 * 11 8 7 26 26 C 1.38232 * 120.00083 * 180.15957 * 2 1 3 27 27 H 1.09003 * 109.47123 * 90.00536 * 1 2 3 28 28 H 1.09002 * 109.47085 * 210.00323 * 1 2 3 29 29 H 1.08994 * 109.47479 * 330.00308 * 1 2 3 30 30 H 1.07992 * 120.00232 * 359.97438 * 3 2 1 31 31 H 1.08999 * 109.46722 * 269.97980 * 5 4 3 32 32 H 1.08996 * 109.46896 * 29.98378 * 5 4 3 33 33 H 1.09004 * 109.46610 * 149.98207 * 5 4 3 34 34 H 1.08004 * 119.99754 * 179.97438 * 6 4 3 35 35 H 1.08998 * 109.58959 * 246.15725 * 12 11 8 36 36 H 1.09003 * 109.58592 * 6.58293 * 12 11 8 37 37 H 1.08998 * 109.50939 * 294.70294 * 13 12 11 38 38 H 1.09003 * 109.48831 * 174.59930 * 13 12 11 39 39 H 1.09002 * 109.46115 * 178.59924 * 14 13 12 40 40 H 1.09004 * 109.45806 * 58.62809 * 14 13 12 41 41 H 0.96995 * 120.00244 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.59005 * 113.84271 * 25 11 8 43 43 H 1.09000 * 109.58835 * 353.41607 * 25 11 8 44 44 H 1.07995 * 120.00513 * 0.06574 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3340 2.5024 0.0000 6 6 4.2717 0.0000 0.0016 7 6 3.5805 -1.1971 0.0027 8 16 4.4616 -2.7230 0.0048 9 8 5.7447 -2.4463 -0.5395 10 8 3.5801 -3.6961 -0.5389 11 7 4.7060 -3.1458 1.5871 12 6 5.9112 -2.7044 2.3023 13 6 5.4869 -1.9980 3.5937 14 6 4.5802 -2.9270 4.4043 15 6 3.3222 -3.2487 3.5943 16 1 2.8012 -2.3233 3.3485 17 6 2.4145 -4.1365 4.4061 18 1 2.1465 -5.1157 4.0378 19 6 1.9264 -3.6986 5.6189 20 7 2.2532 -2.5063 6.0676 21 14 0.8019 -4.7993 6.6255 22 1 1.5121 -6.0602 6.9587 23 1 0.4186 -4.1015 7.8790 24 1 -0.4185 -5.1117 5.8393 25 6 3.7217 -3.9690 2.3027 26 6 2.1981 -1.1971 -0.0033 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5137 30 1 1.6582 2.1324 -0.0004 31 1 4.5163 2.8161 -1.0279 32 1 3.7446 3.2623 0.5128 33 1 5.2861 2.3724 0.5146 34 1 5.3517 0.0001 0.0016 35 1 6.5295 -3.5687 2.5445 36 1 6.4751 -2.0130 1.6760 37 1 4.9453 -1.0845 3.3479 38 1 6.3716 -1.7504 4.1803 39 1 4.2969 -2.4363 5.3355 40 1 5.1139 -3.8506 4.6283 41 1 1.9095 -2.1981 6.9207 42 1 4.1615 -4.9364 2.5449 43 1 2.8409 -4.1121 1.6767 44 1 1.6583 -2.1324 -0.0070 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259520703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:43 Heat of formation + Delta-G solvation = -67.550834 kcal Electronic energy + Delta-G solvation = -26451.821858 eV Core-core repulsion = 22881.125160 eV Total energy + Delta-G solvation = -3570.696698 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.45708 -37.72578 -37.00032 -35.56394 -33.58101 -33.32863 -32.21948 -31.11122 -30.11878 -27.45742 -26.76811 -25.13191 -23.67075 -22.92268 -21.69075 -20.81626 -19.47595 -18.27088 -17.40299 -16.97091 -16.18271 -16.02831 -15.91868 -15.11851 -14.63735 -14.14334 -13.91706 -13.84460 -13.51793 -13.27570 -13.22197 -13.06471 -12.79477 -12.72228 -12.60819 -12.19538 -12.12970 -12.06727 -11.84380 -11.81149 -11.73240 -11.31367 -11.15102 -10.98447 -10.86270 -10.76933 -10.57996 -10.26816 -9.95782 -9.81745 -9.43922 -9.08869 -8.87447 -8.59028 -8.46279 -8.17041 -6.03737 -4.11261 0.65315 0.98455 1.33087 3.20485 3.29250 3.34030 3.37229 3.58392 4.06461 4.39172 4.47364 4.68986 4.85174 5.00729 5.18686 5.21344 5.25664 5.27478 5.30880 5.45346 5.49385 5.59941 5.67907 5.71804 5.78542 5.81428 5.99645 6.01847 6.10431 6.17247 6.25327 6.31909 6.35563 6.46591 6.47990 6.59945 6.63963 6.86567 6.91916 7.01266 7.19687 7.42335 7.68254 7.91322 8.06965 8.37042 8.92265 9.53836 11.01357 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011951 B = 0.005062 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.403851 B = 5530.193045 C = 6295.868353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.101 4.101 3 C -0.070 4.070 4 C -0.107 4.107 5 C -0.113 4.113 6 C -0.028 4.028 7 C -0.661 4.661 8 S 2.688 3.312 9 O -0.969 6.969 10 O -0.961 6.961 11 N -0.989 5.989 12 C 0.125 3.875 13 C -0.135 4.135 14 C -0.110 4.110 15 C 0.040 3.960 16 H 0.030 0.970 17 C -0.516 4.516 18 H 0.057 0.943 19 C 0.065 3.935 20 N -0.888 5.888 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.125 3.875 26 C -0.019 4.019 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.126 0.874 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.135 0.865 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.036 0.964 41 H 0.261 0.739 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.682 8.324 -10.328 13.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.102 4.102 3 C -0.089 4.089 4 C -0.108 4.108 5 C -0.169 4.169 6 C -0.047 4.047 7 C -0.747 4.747 8 S 2.779 3.221 9 O -0.959 6.959 10 O -0.951 6.951 11 N -0.829 5.829 12 C 0.000 4.000 13 C -0.174 4.174 14 C -0.148 4.148 15 C 0.020 3.980 16 H 0.048 0.952 17 C -0.555 4.555 18 H 0.076 0.924 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.719 3.281 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.202 1.202 25 C 0.002 3.998 26 C -0.038 4.038 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.144 0.856 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.153 0.847 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.921 7.973 -10.910 13.825 hybrid contribution -1.020 0.142 1.057 1.476 sum 1.900 8.115 -9.853 12.905 Atomic orbital electron populations 1.20814 0.90517 1.03544 1.02316 1.20012 0.96553 0.93005 1.00627 1.21162 0.93610 0.97708 0.96375 1.19969 0.93983 0.95435 1.01400 1.20786 1.00118 0.93693 1.02332 1.20711 0.99753 0.90694 0.93552 1.31122 1.06469 1.20564 1.16591 1.01982 0.73409 0.73715 0.72971 1.93527 1.39422 1.85986 1.76958 1.93554 1.67112 1.57691 1.76733 1.57622 1.30409 1.64549 1.30292 1.21430 0.85273 0.98966 0.94318 1.22010 0.99887 0.99698 0.95786 1.21576 0.95121 0.97036 1.01028 1.18976 0.93329 0.95948 0.89769 0.95198 1.21067 1.28506 1.01992 1.03956 0.92434 1.24923 0.96230 0.95006 0.97519 1.69865 1.44581 1.17790 1.20425 0.86673 0.81228 0.80727 0.79448 1.20241 1.21388 1.20249 1.21855 0.89126 0.93414 0.95438 1.20808 0.91957 0.98863 0.92175 0.91131 0.90730 0.91362 0.85617 0.91156 0.91392 0.91178 0.84700 0.91368 0.90704 0.92522 0.92588 0.88771 0.94533 0.92958 0.91755 0.90640 0.84315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 10.01 36.00 0.36 -0.93 16 2 C -0.10 -1.41 5.88 -104.63 -0.62 -2.03 16 3 C -0.07 -0.89 9.36 -39.58 -0.37 -1.26 16 4 C -0.11 -1.39 5.88 -104.62 -0.62 -2.00 16 5 C -0.11 -1.07 10.01 36.01 0.36 -0.71 16 6 C -0.03 -0.41 9.18 -39.58 -0.36 -0.77 16 7 C -0.66 -10.79 5.97 -39.58 -0.24 -11.03 16 8 S 2.69 47.09 5.69 -107.50 -0.61 46.48 16 9 O -0.97 -17.69 16.00 -57.17 -0.91 -18.61 16 10 O -0.96 -18.75 15.99 -57.17 -0.91 -19.67 16 11 N -0.99 -17.81 3.29 -113.52 -0.37 -18.18 16 12 C 0.13 2.05 6.38 -3.71 -0.02 2.03 16 13 C -0.13 -2.41 6.08 -26.61 -0.16 -2.57 16 14 C -0.11 -2.41 4.96 -26.69 -0.13 -2.54 16 15 C 0.04 0.93 2.25 -91.65 -0.21 0.72 16 16 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 17 C -0.52 -13.42 8.57 -34.44 -0.30 -13.72 16 18 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 20 N -0.89 -24.26 11.31 55.43 0.63 -23.64 16 21 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 C 0.13 2.54 5.60 -3.71 -0.02 2.52 16 26 C -0.02 -0.30 9.18 -39.58 -0.36 -0.66 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 29 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 34 H 0.14 1.78 7.62 -52.48 -0.40 1.38 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.08 7.13 -51.93 -0.37 0.71 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.08 1.51 7.12 -51.93 -0.37 1.14 16 44 H 0.14 2.16 7.61 -52.49 -0.40 1.76 16 LS Contribution 364.85 15.07 5.50 5.50 Total: -1.00 -30.53 364.85 -11.37 -41.90 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.88 Total: 1.99 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: -2.78 Total: -31.33 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.25 Total: -41.81 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -1.83 Total: -38.27 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 47.09 SS G_CDS: -0.61 Total: 46.48 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.53 -11.37 -41.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259520703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.656 kcal (2) G-P(sol) polarization free energy of solvation -30.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds